Tampere University of Technology

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Datasets

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  1. Supplementary data for "Direct Laser Writing of Photostable Fluorescent Silver Nanoclusters in Polymer Films"

    Bautista, G. (Creator), Kunwar, P. (Creator), Toivonen, J. (Creator), Tampere University of Technology, 2014

    Dataset

  2. Supplementary data for "Efflux Protein Expression in Human Stem Cell-Derived Retinal Pigment Epithelial Cells"

    Juuti-Uusitalo, K. (Creator), Vaajasaari, H. (Creator), Ryhänen, T. (Creator), Narkilahti, S. (Creator), Suuronen, R. (Creator), Mannermaa, E. (Creator), Kaarniranta, K. (Creator), Skottman, H. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0030089.s001

    Dataset

  3. Supplementary data for "Enzymatic Oxidation of Cholesterol: Properties and Functional Effects of Cholestenone in Cell Membranes"

    Neuvonen, M. (Creator), Manna, M. (Creator), Mokkila, S. (Creator), Javanainen, M. (Creator), Rog, T. (Creator), Liu, Z. (Creator), Bittman, R. (Creator), Vattulainen, I. (Creator), Ikonen, E. (Creator), Tampere University of Technology, 2017

    Dataset

  4. Supplementary data for "ESTOOLS Data@Hand: human stem cell gene expression resource"

    Kong, L. (Creator), Aho, K. (Creator), Granberg, K. J. (Creator), Lund, R. (Creator), Järvenpää, L. E. (Creator), Seppälä, J. (Creator), Gokhale, P. (Creator), Leinonen, K. O. (Creator), Hahne, L. (Creator), Mäkelä, J. P. (Creator), Laurila, K. K. (Creator), Pukkila, H. M. (Creator), Närvä, E. (Creator), Yli-Harja, O. (Creator), Andrews, P. W. (Creator), Nykter, M. P. M. (Creator), Lahesmaa, R. (Creator), Roos, J. C. (Creator), Autio, R. A. (Creator), Tampere University of Technology, 2017

    Dataset

  5. Supplementary data for "Evaluation of methods for modeling transcription factor sequence specificity"

    Weirauch, M. T. (Creator), Cote, A. (Creator), Norel, R. (Creator), Annala, M. J. (Creator), Zhao, Y. (Creator), Riley, T. R. (Creator), Saez-Rodriguez, J. (Creator), Cokelaer, T. (Creator), Vedenko, A. (Creator), Talukder, S. (Creator), Bussemaker, H. J. (Creator), Morris, Q. D. (Creator), Bulyk, M. L. (Creator), Stolovitzky, G. (Creator), Hughes, T. R. (Creator), Tampere University of Technology, 2017

    Dataset

  6. Supplementary data for "Fluctuations of Hi-Hat Timing and Dynamics in a Virtuoso Drum Track of a Popular Music Recording"

    Räsänen, E. (Creator), Pulkkinen, O. I. (Creator), Virtanen, T. (Creator), Zollner, M. (Creator), Hennig, H. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0127902.s001

    Dataset

  7. Supplementary data for "Fluorescent Protein Based FRET Pairs with Improved Dynamic Range for Fluorescence Lifetime Measurements"

    George Abraham, B. (Creator), Sarkisyan, K. S. (Creator), Mishin, A. S. (Creator), Santala, V. (Creator), Tkachenko, N. (Creator), Karp, M. (Creator), Tampere University of Technology, 2017

    Dataset

  8. Supplementary data for "From local structure to nanosecond recrystallization dynamics in AgInSbTe phase-change materials"

    Matsunaga, T. (Creator), Yamada, N. (Creator), Kojima, R. (Creator), Kohara, S. (Creator), Takata, M. (Creator), Akola, J. (Creator), Jones, R. O. (Creator), Honma, T. (Creator), Ikenaga, E. (Creator), Kobayashi, K. (Creator), Tampere University of Technology, 2017

    Dataset

  9. Supplementary data for "Functional and genetic analysis of the colon cancer network"

    Emmert-Streib, F. (Creator), Matos Simoes, R. D. (Creator), Glazko, G. V. (Creator), McDade, S. (Creator), Haibe-Kains, B. (Creator), Holzinger, A. (Creator), Dehmer, M. (Creator), Campbell, F. (Creator), Tampere University of Technology, 2017

    Dataset

  10. Supplementary data for "Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles"

    Tuomela, S. (Creator), Autio, R. A. (Creator), Buerki-Thurnherr, T. (Creator), Arslan, O. (Creator), Kunzmann, A. (Creator), Andersson-Willman, B. (Creator), Wick, P. (Creator), Mathur, S. (Creator), Scheynius, A. (Creator), Krug, H. F. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Tampere University of Technology, 2017

    Dataset

  11. Supplementary data for "Gene-pair expression signatures reveal lineage control"

    Heinäniemi, M. (Creator), Wienecke-Baldacchino, A. (Creator), Sinkkonen, L. (Creator), Nykter, M. P. M. (Creator), Kramer, R. (Creator), Zhou, J. X. (Creator), Kreisberg, R. (Creator), Kauffman, S. (Creator), Huang, S. (Creator), Shmulevich, I. (Creator), Tampere University of Technology, 2017

    Dataset

  12. Supplementary data for "Ghost imaging in the time domain"

    Ryczkowski, P. (Creator), Barbier, M. (Creator), Genty, G. (Creator), Friberg, A. T. (Creator), Dudley, J. M. (Creator), Tampere University of Technology, 2017

    Dataset

  13. Supplementary data for "GSAR: Bioconductor package for Gene Set analysis in R"

    Rahmatallah, Y. (Creator), Zybailov, B. (Creator), Emmert-Streib, F. (Creator), Glazko, G. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3673834

    Dataset

  14. Supplementary data for "Guiding light via geometric phases"

    Slussarenko, S. (Creator), Piccirillo, B. (Creator), Santamato, E. (Creator), Marrucci, L. (Creator), Assanto, G. (Creator), Alberucci, A. (Creator), Jisha, C. P. (Creator), Tampere University of Technology, 2017

    Dataset

  15. Supplementary data for "High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity"

    Närvä, E. (Creator), Autio, R. A. (Creator), Rahkonen, N. (Creator), Rasool, O. (Creator), Lahesmaa, R. (Creator), Kong, L. (Creator), Yli-Harja, O. (Creator), Harrison, N. (Creator), Andrews, P. W. (Creator), Kitsberg, D. (Creator), Borghese, L. (Creator), Brüstle, O. (Creator), Itskovitz-Eldor, J. (Creator), Dvorak, P. (Creator), Hovatta, O. (Creator), Otonkoski, T. (Creator), Tuuri, T. (Creator), Cui, W. (Creator), Baker, D. (Creator), Maltby, E. (Creator), Moore, H. D. (Creator), Benvenisty, N. (Creator), Tampere University of Technology, 2017

    Dataset

  16. Supplementary data for "How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations"

    Äijänen, T. (Creator), Koivuniemi, A. (Creator), Javanainen, M. (Creator), Rissanen, S. (Creator), Rog, T. (Creator), Vattulainen, I. (Creator), Tampere University of Technology, 2017

    Dataset

  17. Supplementary data for "Information propagation within the Genetic Network of Saccharomyces cerevisiae"

    Chowdhury, S. M. H. (Creator), Lloyd-Price, J. R. (Creator), Smolander, O. A. (Creator), Baici, W. C. V. (Creator), Hughes, T. R. (Creator), Yli-Harja, O. (Creator), Chua, G. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017

    Dataset

  18. Supplementary data for "Information-Theoretic Analysis of the Dynamics of an Executable Biological Model"

    Sadot, A. (Creator), Sarbu, S. (Creator), Kesseli, J. M. E. (Creator), Amir-Kroll, H. (Creator), Zhang, W. (Creator), Nykter, M. (Creator), Shmulevich, I. (Creator), Tampere University of Technology, 2017

    Dataset

  19. Supplementary data for "Integrated genomic characterization of endometrial carcinoma"

    Getz, G. (Creator), Gabriel, S. B. (Creator), Cibulskis, K. (Creator), Lander, E. (Creator), Sivachenko, A. (Creator), Sougnez, C. (Creator), Lawrence, M. (Creator), Kandoth, C. (Creator), Dooling, D. (Creator), Fulton, R. (Creator), Fulton, L. (Creator), Kalicki-Veizer, J. (Creator), McLellan, M. D. (Creator), O'Laughlin, M. (Creator), Schmidt, H. (Creator), Wilson, R. K. (Creator), Ye, K. (Creator), Li, D. (Creator), Ally, A. (Creator), Annala, M. J. (Creator), Tampere University of Technology, 2017

    Dataset

  20. Supplementary data for "Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information"

    Matos Simoes, R. D. (Creator), Dehmer, M. (Creator), Emmert-Streib, F. (Creator), Tampere University of Technology, 2017

    Dataset

  21. Supplementary data for "Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis"

    Pajula, J. T. (Creator), Kauppi, J. (Creator), Tohka, J. P. (Creator), Tampere University of Technology, 2017

    Dataset

  22. Supplementary data for "In Vivo Facilitated Diffusion Model"

    Bauer, M. (Creator), Metzler, R. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0053956.s002

    Dataset

  23. Supplementary data for "In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps"

    Kandhavelu, M. (Creator), Mannerström, H. O. W. (Creator), Gupta, A. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Yli-Harja, O. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017

    Dataset

  24. Supplementary data for "In Vivo Transcription Kinetics of a Synthetic Gene Uninvolved in Stress-Response Pathways in Stressed Escherichia coli Cells"

    Muthukrishnan, A. B. (Creator), Martikainen, A. (Creator), Neeli Venkata, R. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017

    Dataset

  25. Supplementary data for "Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations"

    Koivuniemi, A. S. (Creator), Vuorela, T. (Creator), Kovanen, P. T. (Creator), Vattulainen, I. (Creator), Hyvönen, M. (Creator), Tampere University of Technology, 2017

    Dataset

  26. Supplementary data for "Measurement of the nucleation of atmospheric aerosol particles"

    Kulmala, M. (Creator), Petäjä, T. (Creator), Nieminen, T. (Creator), Sipilä, M. (Creator), Manninen, H. T. (Creator), Lehtipalo, K. (Creator), Dal Maso, M. (Creator), Aalto, P. P. (Creator), Junninen, H. (Creator), Paasonen, P. (Creator), Kerminen, V. (Creator), Riipinen, I. (Creator), Lehtinen, K. E. J. (Creator), Laaksonen, A. (Creator), Tampere University of Technology, 2017

    Dataset

  27. Supplementary data for "Membrane cholesterol access into a G-protein-coupled receptor"

    Guixa-Gonzalez, R. (Creator), Albasanz, J. L. (Creator), Rodriguez-Espigares, I. (Creator), Pastor, M. (Creator), Sanz, F. (Creator), Martí-Solano, M. (Creator), Manna, M. (Creator), Martinez-Seara, H. (Creator), Hildebrand, P. W. (Creator), Martín, M. (Creator), Selent, J. (Creator), Tampere University of Technology, 2017

    Dataset

  28. Supplementary data for "Molecular electrometer and binding of cations to phospholipid bilayers"

    Girych, M. (Creator), Javanainen, M. (Creator), Melcr, J. (Creator), Monticelli, L. (Creator), Määttä, J. (Creator), Ollila, O. H. S. (Creator), Tynkkynen, J. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.167336

    Dataset

  29. Supplementary data for "Molecular interactions on single-walled carbon nanotubes revealed by high-resolution transmission microscopy"

    Umeyama, T. (Creator), Baek, J. (Creator), Sato, Y. (Creator), Suenaga, K. (Creator), Abou-Chahine, F. (Creator), Tkachenko, N. (Creator), Lemmetyinen, H. J. (Creator), Imahori, H. (Creator), Tampere University of Technology, 2017

    Dataset

  30. Supplementary data for "Mutually Exclusive Roles of SHARPIN in Integrin Inactivation and NF-κB Signaling"

    Franceschi, N. D. (Creator), Peuhu, E. (Creator), Parsons, M. (Creator), Rissanen, S. (Creator), Vattulainen, I. (Creator), Salmi, M. (Creator), Ivaska, J. (Creator), Pouwels, J. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0143423.s001

    Dataset

  31. Supplementary data for "NanoMiner — Integrative Human Transcriptomics Data Resource for Nanoparticle Research"

    Kong, L. (Creator), Tuomela, S. (Creator), Hahne, L. (Creator), Ahlfors, H. (Creator), Yli-Harja, O. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Autio, R. A. (Creator), Tampere University of Technology, 2017

    Dataset

  32. Supplementary data for "New particle formation in forests inhibited by isoprene emissions"

    Kiendler-Scharr, A. (Creator), Wildt, J. (Creator), Dal Maso, M. (Creator), Hohaus, T. (Creator), Kleist, E. (Creator), Mentel, T. F. (Creator), Tillmann, R. (Creator), Uerlings, R. (Creator), Schurr, U. (Creator), Wahner, A. (Creator), Tampere University of Technology, 2017

    Dataset

  33. Supplementary data for "Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific"

    Trimmer, M. (Creator), Chronopoulou, P. (Creator), Maanoja, S. (Creator), Upstill-Goddard, R. C. (Creator), Kitidis, V. (Creator), Purdy, K. J. (Creator), Tampere University of Technology, 2017

    Dataset

  34. Supplementary data for "Physical activity, body mass index and heart rate variability-based stress and recovery in 16 275 Finnish employees: a cross-sectional study"

    Föhr, T. (Creator), Pietilä, J. (Creator), Helander, E. (Creator), Myllymäki, T. (Creator), Lindholm, H. (Creator), Rusko, H. (Creator), Kujala, U. M. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3598376

    Dataset

  35. Supplementary data for "Prediction of disease-related mutations affecting protein localization"

    Laurila, K. K. (Creator), Vihinen, M. (Creator), Tampere University of Technology, 2017

    Dataset

  36. Supplementary data for "Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis"

    Härmä, V. (Creator), Schukov, H. (Creator), Happonen, A. P. (Creator), Ahonen, I. (Creator), Virtanen, J. (Creator), Siitari, H. (Creator), Åkerfelt, M. (Creator), Lötjönen, J. (Creator), Nees, M. (Creator), Tampere University of Technology, 2017

    Dataset

  37. Supplementary data for "Quantum size effects in ambient CO oxidation catalysed by ligand-protected gold clusters"

    Lopez-Acevedo, O. (Creator), Kacprzak, K. A. (Creator), Akola, J. (Creator), Häkkinen, H. (Creator), Tampere University of Technology, 2017

    Dataset

  38. Supplementary data for "Rapid and accurate detection of urinary pathogens by mobile IMS-based electronic nose: a proof-of-principle study"

    Roine, A. (Creator), Saviauk, T. (Creator), Kumpulainen, P. S. (Creator), Karjalainen, M. (Creator), Tuokko, A. (Creator), Aittoniemi, J. (Creator), Vuento, R. (Creator), Lekkala, J. (Creator), Lehtimäki, T. (Creator), Tammela, T. L. (Creator), Oksala, N. K. J. (Creator), Tampere University of Technology, 2017, 10.5061/dryad.v3g17

    Dataset

  39. Supplementary data for "Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network"

    Aho, T. (Creator), Almusa, H. (Creator), Matilainen, J. (Creator), Larjo, A. J. (Creator), Ruusuvuori, P. (Creator), Aho, K. (Creator), Wilhelm, T. (Creator), Lähdesmäki, H. J. (Creator), Beyer, A. (Creator), Harju, M. (Creator), Chowdhury, S. M. H. (Creator), Leinonen, K. O. (Creator), Roos, C. (Creator), Yli-Harja, O. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0010662.s001

    Dataset

  40. Supplementary data for "Robustness and Information Propagation in Attractors of Random Boolean Networks"

    Lloyd-Price, J. R. (Creator), Gupta, A. (Creator), Ribeiro, A. S. (Creator), Tampere University of Technology, 2017

    Dataset

  41. Supplementary data for "Role of Lipids in Spheroidal High Density Lipoproteins"

    Vuorela, T. (Creator), Catte, A. (Creator), Niemelä, P. S. (Creator), Hall, A. M. (Creator), Hyvönen, M. T. (Creator), Tampere University of Technology, 2017

    Dataset

  42. Supplementary data for "Structured light enables biomimetic swimming and versatile locomotion of photoresponsive soft microrobots"

    Palagi, S. (Creator), Mark, A. G. (Creator), Melde, K. (Creator), Qiu, T. (Creator), Sanchez-Castillo, A. (Creator), Fischer, P. (Creator), Reigh, S. Y. (Creator), Lauga, E. (Creator), Zeng, H. (Creator), Parmeggiani, C. (Creator), Martella, D. (Creator), Wiersma, D. S. (Creator), Kapernaum, N. (Creator), Giesselmann, F. (Creator), Tampere University of Technology, 2017

    Dataset

  43. Supplementary data for "Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework"

    Mäki-Marttunen, T. M. (Creator), Acimovic, J. (Creator), Ruohonen, K. P. (Creator), Linne, M. (Creator), Tampere University of Technology, 2017

    Dataset

  44. Supplementary data for "Sub-micron scale patterning of fluorescent silver nanoclusters using low-power laser"

    Bautista, G. (Creator), Toivonen, J. (Creator), Kunwar, P. (Creator), Tampere University of Technology, 2016

    Dataset

  45. Supplementary data for "Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements"

    Oliveira, S. M. D. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Tran, H. (Creator), Kandavalli, V. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2016, 10.1371/journal.pcbi.1005174#sec012

    Dataset

  46. Supplementary data for "Texture Descriptors Ensembles Enable Image-Based Classification of Maturation of Human Stem Cell-Derived Retinal Pigmented Epithelium"

    Nanni, L. (Creator), Paci, M. (Creator), Caetano dos Santos, F. L. (Creator), Skottman, H. (Creator), Juuti-Uusitalo, K. (Creator), Hyttinen, J. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.2070109

    Dataset

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