Tampere University of Technology

TUTCRIS Research Portal

Datasets

  1. Supplementary data for "Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information"

    Matos Simoes, R. D. (Creator), Dehmer, M. (Creator), Emmert-Streib, F. (Creator), Tampere University of Technology, 2017

    Dataset

  2. Supplementary data for "Bioprocess data mining using regularized regression and random forests"

    Hassan, S. (Creator), Farhan, M. (Creator), Mangayil, R. (Creator), Huttunen, H. (Creator), Aho, T. (Creator), Tampere University of Technology, 2017

    Dataset

  3. Supplementary data for "Functional and genetic analysis of the colon cancer network"

    Emmert-Streib, F. (Creator), Matos Simoes, R. D. (Creator), Glazko, G. V. (Creator), McDade, S. (Creator), Haibe-Kains, B. (Creator), Holzinger, A. (Creator), Dehmer, M. (Creator), Campbell, F. (Creator), Tampere University of Technology, 2017

    Dataset

  4. Supplementary data for "Comparative evaluation of gene set analysis approaches for RNA-Seq data"

    Rahmatallah, Y. (Creator), Emmert-Streib, F. (Creator), Glazko, G. (Creator), Tampere University of Technology, 2017

    Dataset

  5. Supplementary data for "Comprehensive molecular portraits of human breast tumours"

    Koboldt, D. C. (Creator), Fulton, R. S. (Creator), McLellan, M. D. (Creator), Schmidt, H. (Creator), Kalicki-Veizer, J. (Creator), McMichael, J. F. (Creator), Fulton, L. L. (Creator), Dooling, D. J. (Creator), Ding, L. (Creator), Mardis, E. R. (Creator), Wilson, R. K. (Creator), Ally, A. (Creator), Balasundaram, M. (Creator), Butterfield, Y. S. N. (Creator), Carlsen, R. (Creator), Carter, C. (Creator), Chu, A. (Creator), Chuah, E. (Creator), Chun, H. E. (Creator), Erkkilä, T. (Creator), Tampere University of Technology, 2017

    Dataset

  6. Supplementary data for "Integrated genomic characterization of endometrial carcinoma"

    Getz, G. (Creator), Gabriel, S. B. (Creator), Cibulskis, K. (Creator), Lander, E. (Creator), Sivachenko, A. (Creator), Sougnez, C. (Creator), Lawrence, M. (Creator), Kandoth, C. (Creator), Dooling, D. (Creator), Fulton, R. (Creator), Fulton, L. (Creator), Kalicki-Veizer, J. (Creator), McLellan, M. D. (Creator), O'Laughlin, M. (Creator), Schmidt, H. (Creator), Wilson, R. K. (Creator), Ye, K. (Creator), Li, D. (Creator), Ally, A. (Creator), Annala, M. J. (Creator), Tampere University of Technology, 2017

    Dataset

  7. Supplementary data for "Critical assessment of automated flow cytometry data analysis techniques"

    Aghaeepour, N. (Creator), Brinkman, R. (Creator), Finak, G. (Creator), Gottardo, R. (Creator), Hoos, H. (Creator), Mosmann, T. R. (Creator), Scheuermann, R. H. (Creator), Huttunen, H. (Creator), Kollman, T. R. (Creator), Nykter, M. P. M. (Creator), Ruusuvuori, P. (Creator), Seifert, M. (Creator), Guex, N. (Creator), Tampere University of Technology, 2017

    Dataset

  8. Supplementary data for "Atomic and electronic structures of an extremely fragile liquid"

    Kohara, S. (Creator), Akola, J. (Creator), Patrikeev, L. (Creator), Ropo, M. (Creator), Ohara, K. (Creator), Itou, M. (Creator), Fujiwara, A. (Creator), Yahiro, J. (Creator), Okada, J. T. (Creator), Ishikawa, T. (Creator), Mizuno, A. (Creator), Masuno, A. (Creator), Watanabe, Y. (Creator), Usuki, T. (Creator), Tampere University of Technology, 2017

    Dataset

  9. Supplementary data for "Molecular interactions on single-walled carbon nanotubes revealed by high-resolution transmission microscopy"

    Umeyama, T. (Creator), Baek, J. (Creator), Sato, Y. (Creator), Suenaga, K. (Creator), Abou-Chahine, F. (Creator), Tkachenko, N. (Creator), Lemmetyinen, H. J. (Creator), Imahori, H. (Creator), Tampere University of Technology, 2017

    Dataset

  10. Supplementary data for "Controlling the motion of multiple objects on a Chladni plate"

    Zhou, Q. (Creator), Sariola, V. (Creator), Latifi, S. K. (Creator), Liimatainen, V. (Creator), Tampere University of Technology, 2017

    Dataset

  11. Supplementary data for "The complex nature of calcium cation interactions with phospholipid bilayers"

    Melcrová, A. (Creator), Pokorna, S. (Creator), Pullanchery, S. (Creator), Kohagen, M. (Creator), Jurkiewicz, P. (Creator), Hof, M. (Creator), Jungwirth, P. (Creator), Cremer, P. S. (Creator), Cwiklik, L. (Creator), Tampere University of Technology, 2017

    Dataset

  12. Supplementary data for "Membrane cholesterol access into a G-protein-coupled receptor"

    Guixa-Gonzalez, R. (Creator), Albasanz, J. L. (Creator), Rodriguez-Espigares, I. (Creator), Pastor, M. (Creator), Sanz, F. (Creator), Martí-Solano, M. (Creator), Manna, M. (Creator), Martinez-Seara, H. (Creator), Hildebrand, P. W. (Creator), Martín, M. (Creator), Selent, J. (Creator), Tampere University of Technology, 2017

    Dataset

  13. Supplementary data for "Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress"

    Urmersbach, S. (Creator), Aho, T. (Creator), Alter, T. (Creator), Hassan, S. (Creator), Autio, R. A. (Creator), Huehn, S. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3607616

    Dataset

  14. Supplementary data for "CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels"

    Kartasalo, K. (Creator), Pölönen, R. P. (Creator), Ojala, M. (Creator), Rasku, J. (Creator), Lekkala, J. (Creator), Aalto-Setälä, K. (Creator), Kallio, P. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3598943

    Dataset

  15. Supplementary data for "Physical activity, body mass index and heart rate variability-based stress and recovery in 16 275 Finnish employees: a cross-sectional study"

    Föhr, T. (Creator), Pietilä, J. (Creator), Helander, E. (Creator), Myllymäki, T. (Creator), Lindholm, H. (Creator), Rusko, H. (Creator), Kujala, U. M. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3598376

    Dataset

  16. Supplementary data for "Molecular electrometer and binding of cations to phospholipid bilayers"

    Girych, M. (Creator), Javanainen, M. (Creator), Melcr, J. (Creator), Monticelli, L. (Creator), Määttä, J. (Creator), Ollila, O. H. S. (Creator), Tynkkynen, J. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.167336

    Dataset

  17. TUT Acoustic scenes 2017, Development dataset

    Mesaros, A. (Creator), Virtanen, T. (Creator), Heittola, T. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.400515

    Dataset

  18. TUT Acoustic scenes 2016, Evaluation dataset

    Mesaros, A. (Creator), Heittola, T. (Creator), Virtanen, T. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.165995

    Dataset

  19. TUT Sound events 2017, Development dataset

    Mesaros, A. (Creator), Heittola, T. (Creator), Virtanen, T. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.400516

    Dataset

  20. Topology and structure of Au144(SRCOO-)60 from "Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment"

    Heikkilä, E. A. (Creator), Gurtovenko, A. A. (Creator), Martinez-Seara, H. (Creator), Häkkinen, H. (Creator), Vattulainen, I. (Creator), Akola, J. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.16154

    Dataset

  21. Topology and structure of Au144(SRNH3+)60 from "Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment"

    Heikkilä, E. A. (Creator), Gurtovenko, A. A. (Creator), Martinez-Seara, H. (Creator), Häkkinen, H. (Creator), Vattulainen, I. (Creator), Akola, J. (Creator), Tampere University of Technology, 2017, 10.5281/zenodo.16155

    Dataset

  22. Supplementary data for "GSAR: Bioconductor package for Gene Set analysis in R"

    Rahmatallah, Y. (Creator), Zybailov, B. (Creator), Emmert-Streib, F. (Creator), Glazko, G. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3673834

    Dataset

  23. Supplementary data for "The type of the functional cardiovascular response to upright posture is associated with arterial stiffness: a cross-sectional study in 470 volunteers"

    Tahvanainen, A. M. (Creator), Tikkakoski, A. J. (Creator), Koskela, J. K. (Creator), Nordhausen, K. (Creator), Viitala, J. M. (Creator), Leskinen, M. H. (Creator), Kähönen, M. A. P. (Creator), Kööbi, T. (Creator), Uitto, M. T. (Creator), Viik, J. (Creator), Mustonen, J. T. (Creator), Pörsti, I. H. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3631067

    Dataset

  24. Supplementary data for "Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas"

    Lehtinen, B. (Creator), Raita, A. (Creator), Kesseli, J. (Creator), Annala, M. (Creator), Nordfors, K. (Creator), Yli-Harja, O. (Creator), Zhang, W. (Creator), Visakorpi, T. (Creator), Nykter, M. (Creator), Haapasalo, H. (Creator), Granberg, K. J. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3770810

    Dataset

  25. Supplementary data for "Ultrathin Polyimide Membrane as Cell Carrier for Subretinal Transplantation of Human Embryonic Stem Cell Derived Retinal Pigment Epithelium"

    Ilmarinen, T. (Creator), Hiidenmaa, H. (Creator), Kööbi, P. (Creator), Nymark, S. (Creator), Sorkio, A. (Creator), Wang, J. (Creator), Stanzel, B. V. (Creator), Thieltges, F. (Creator), Alajuuma, P. T. (Creator), Oksala, O. E. (Creator), Kataja, M. (Creator), Uusitalo, H. (Creator), Skottman, H. (Creator), Tampere University of Technology, 2017

    Dataset

  26. Supplementary data for "Robustness and Information Propagation in Attractors of Random Boolean Networks"

    Lloyd-Price, J. R. (Creator), Gupta, A. (Creator), Ribeiro, A. S. (Creator), Tampere University of Technology, 2017

    Dataset

  27. Supplementary data for "Thermal Transport Characteristics of Human Skin Measured In Vivo Using Ultrathin Conformal Arrays of Thermal Sensors and Actuators"

    Webb, R. C. (Creator), Pielak, R. M. (Creator), Bastien, P. (Creator), Ayers, J. (Creator), Niittynen, J. K. (Creator), Kurniawan, J. (Creator), Manco, M. (Creator), Lin, A. (Creator), Cho, N. H. (Creator), Malyrchuk, V. (Creator), Balooch, G. (Creator), Rogers, J. A. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0118131.s001

    Dataset

  28. Supplementary data for "In Vivo Facilitated Diffusion Model"

    Bauer, M. (Creator), Metzler, R. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0053956.s002

    Dataset

  29. Supplementary data for "Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles"

    Tuomela, S. (Creator), Autio, R. A. (Creator), Buerki-Thurnherr, T. (Creator), Arslan, O. (Creator), Kunzmann, A. (Creator), Andersson-Willman, B. (Creator), Wick, P. (Creator), Mathur, S. (Creator), Scheynius, A. (Creator), Krug, H. F. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Tampere University of Technology, 2017

    Dataset

  30. Supplementary data for "Unidirectional P-Body Transport during the Yeast Cell Cycle"

    Garmendia-Torres, C. (Creator), Skupin, A. (Creator), Michael, S. A. (Creator), Ruusuvuori, P. (Creator), Kuwada, N. J. (Creator), Falconnet, D. (Creator), Cary, G. A. (Creator), Hansen, C. (Creator), Wiggins, P. A. (Creator), Dudley, A. M. (Creator), Tampere University of Technology, 2017

    Dataset

  31. Supplementary data for "Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel"

    Bjelkmar, P. (Creator), Niemelä, P. S. (Creator), Vattulainen, I. (Creator), Lindahl, E. (Creator), Tampere University of Technology, 2017

    Dataset

  32. Supplementary data for "Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis"

    Härmä, V. (Creator), Schukov, H. (Creator), Happonen, A. P. (Creator), Ahonen, I. (Creator), Virtanen, J. (Creator), Siitari, H. (Creator), Åkerfelt, M. (Creator), Lötjönen, J. (Creator), Nees, M. (Creator), Tampere University of Technology, 2017

    Dataset

  33. Supplementary data for "Association of Lipidome Remodeling in the Adipocyte Membrane with Acquired Obesity in Humans"

    Pietiläinen, K. (Creator), Rog, T. (Creator), Seppänen-Laakso, T. (Creator), Virtue, S. (Creator), Gopalacharyulu, P. (Creator), Tang, J. (Creator), Rodriguez-Cuenca, S. (Creator), Maciejewski, A. (Creator), Naukkarinen, J. (Creator), Ruskeepää, A. (Creator), Niemelä, P. S. (Creator), Yetukuri, L. (Creator), Tan, C. Y. (Creator), Velagapudi, V. (Creator), Castillo, S. (Creator), Nygren, H. (Creator), Hyötyläinen, T. (Creator), Rissanen, A. (Creator), Kaprio, J. (Creator), Yki-Järvinen, H. (Creator), Vattulainen, I. (Creator), Vidal-Puig, A. (Creator), Oresic, M. (Creator), Tampere University of Technology, 2017

    Dataset

  34. Supplementary data for "Cholesterol Induces Specific Spatial and Orientational Order in Cholesterol/Phospholipid Membranes"

    Martinez-Seara, H. (Creator), Rog, T. (Creator), Karttunen, M. (Creator), Vattulainen, I. (Creator), Reigada, R. (Creator), Tampere University of Technology, 2017

    Dataset

  35. Supplementary data for "Adipose Tissue Dysfunction and Altered Systemic Amino Acid Metabolism Are Associated with Non-Alcoholic Fatty Liver Disease"

    Cheng, S. (Creator), Wiklund, P. (Creator), Autio, R. A. (Creator), Borra, R. (Creator), Ojanen, X. (Creator), Xu, L. (Creator), Törmäkangas, T. (Creator), Alen, M. (Creator), Tampere University of Technology, 2017

    Dataset

  36. Supplementary data for "Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis"

    Pajula, J. T. (Creator), Kauppi, J. (Creator), Tohka, J. P. (Creator), Tampere University of Technology, 2017

    Dataset

  37. Supplementary data for "Information-Theoretic Analysis of the Dynamics of an Executable Biological Model"

    Sadot, A. (Creator), Sarbu, S. (Creator), Kesseli, J. M. E. (Creator), Amir-Kroll, H. (Creator), Zhang, W. (Creator), Nykter, M. (Creator), Shmulevich, I. (Creator), Tampere University of Technology, 2017

    Dataset

  38. Supplementary data for "A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays"

    Annala, M. J. (Creator), Laurila, K. (Creator), Lähdesmäki, H. (Creator), Nykter, M. P. M. (Creator), Tampere University of Technology, 2017

    Dataset

  39. Supplementary data for "NanoMiner — Integrative Human Transcriptomics Data Resource for Nanoparticle Research"

    Kong, L. (Creator), Tuomela, S. (Creator), Hahne, L. (Creator), Ahlfors, H. (Creator), Yli-Harja, O. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Autio, R. A. (Creator), Tampere University of Technology, 2017

    Dataset

  40. Supplementary data for "Assessing the Nature of Lipid Raft Membranes"

    Niemelä, P. S. (Creator), Hyvönen, M. T. (Creator), Ollila, O. H. S. (Creator), Karttunen, M. (Creator), Vattulainen, I. (Creator), Tampere University of Technology, 2017

    Dataset

  41. Supplementary data for "Efflux Protein Expression in Human Stem Cell-Derived Retinal Pigment Epithelial Cells"

    Juuti-Uusitalo, K. (Creator), Vaajasaari, H. (Creator), Ryhänen, T. (Creator), Narkilahti, S. (Creator), Suuronen, R. (Creator), Mannermaa, E. (Creator), Kaarniranta, K. (Creator), Skottman, H. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0030089.s001

    Dataset

  42. Supplementary data for "Mutually Exclusive Roles of SHARPIN in Integrin Inactivation and NF-κB Signaling"

    Franceschi, N. D. (Creator), Peuhu, E. (Creator), Parsons, M. (Creator), Rissanen, S. (Creator), Vattulainen, I. (Creator), Salmi, M. (Creator), Ivaska, J. (Creator), Pouwels, J. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0143423.s001

    Dataset

  43. Supplementary data for "Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network"

    Aho, T. (Creator), Almusa, H. (Creator), Matilainen, J. (Creator), Larjo, A. J. (Creator), Ruusuvuori, P. (Creator), Aho, K. (Creator), Wilhelm, T. (Creator), Lähdesmäki, H. J. (Creator), Beyer, A. (Creator), Harju, M. (Creator), Chowdhury, S. M. H. (Creator), Leinonen, K. O. (Creator), Roos, C. (Creator), Yli-Harja, O. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0010662.s001

    Dataset

  44. Supplementary data for "Role of Lipids in Spheroidal High Density Lipoproteins"

    Vuorela, T. (Creator), Catte, A. (Creator), Niemelä, P. S. (Creator), Hall, A. M. (Creator), Hyvönen, M. T. (Creator), Tampere University of Technology, 2017

    Dataset

  45. Supplementary data for "Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework"

    Mäki-Marttunen, T. M. (Creator), Acimovic, J. (Creator), Ruohonen, K. P. (Creator), Linne, M. (Creator), Tampere University of Technology, 2017

    Dataset

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