Tampere University of Technology

TUTCRIS Research Portal

Department of Signal Processing

Research unit: Department

  1. Supplementary data for "High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity"

    Närvä, E. (Creator), Autio, R. A. (Creator), Rahkonen, N. (Creator), Rasool, O. (Creator), Lahesmaa, R. (Creator), Kong, L. (Creator), Yli-Harja, O. (Creator), Harrison, N. (Creator), Andrews, P. W. (Creator), Kitsberg, D. (Creator), Borghese, L. (Creator), Brüstle, O. (Creator), Itskovitz-Eldor, J. (Creator), Dvorak, P. (Creator), Hovatta, O. (Creator), Otonkoski, T. (Creator), Tuuri, T. (Creator), Cui, W. (Creator), Baker, D. (Creator), Maltby, E. (Creator), Moore, H. D. (Creator), Benvenisty, N. (Creator), Tampere University of Technology, 2017

    Dataset

  2. Supplementary data for "ESTOOLS Data@Hand: human stem cell gene expression resource"

    Kong, L. (Creator), Aho, K. (Creator), Granberg, K. J. (Creator), Lund, R. (Creator), Järvenpää, L. E. (Creator), Seppälä, J. (Creator), Gokhale, P. (Creator), Leinonen, K. O. (Creator), Hahne, L. (Creator), Mäkelä, J. P. (Creator), Laurila, K. K. (Creator), Pukkila, H. M. (Creator), Närvä, E. (Creator), Yli-Harja, O. (Creator), Andrews, P. W. (Creator), Nykter, M. P. M. (Creator), Lahesmaa, R. (Creator), Roos, J. C. (Creator), Autio, R. A. (Creator), Tampere University of Technology, 2017

    Dataset

  3. Supplementary data for "Evaluation of methods for modeling transcription factor sequence specificity"

    Weirauch, M. T. (Creator), Cote, A. (Creator), Norel, R. (Creator), Annala, M. J. (Creator), Zhao, Y. (Creator), Riley, T. R. (Creator), Saez-Rodriguez, J. (Creator), Cokelaer, T. (Creator), Vedenko, A. (Creator), Talukder, S. (Creator), Bussemaker, H. J. (Creator), Morris, Q. D. (Creator), Bulyk, M. L. (Creator), Stolovitzky, G. (Creator), Hughes, T. R. (Creator), Tampere University of Technology, 2017

    Dataset

  4. Supplementary data for "Gene-pair expression signatures reveal lineage control"

    Heinäniemi, M. (Creator), Wienecke-Baldacchino, A. (Creator), Sinkkonen, L. (Creator), Nykter, M. P. M. (Creator), Kramer, R. (Creator), Zhou, J. X. (Creator), Kreisberg, R. (Creator), Kauffman, S. (Creator), Huang, S. (Creator), Shmulevich, I. (Creator), Tampere University of Technology, 2017

    Dataset

  5. Supplementary data for "Copy number variation and selection during reprogramming to pluripotency"

    Hussein, S. M. (Creator), Sourour, M. (Creator), Hämäläinen, R. (Creator), Nagy, A. (Creator), Vuoristo, S. (Creator), Olsson, C. (Creator), Lundin, K. (Creator), Mikkola, M. (Creator), Trokovic, R. (Creator), Otonkoski, T. (Creator), Batada, N. N. (Creator), Ng, S. (Creator), Ching, R. W. (Creator), Bazett-Jones, D. P. (Creator), Autio, R. A. (Creator), Närvä, E. (Creator), Lahesmaa, R. (Creator), Peitz, M. (Creator), Brüstle, O. (Creator), Alitalo, K. (Creator), Tampere University of Technology, 2017

    Dataset

  6. Supplementary data for "Prediction of disease-related mutations affecting protein localization"

    Laurila, K. K. (Creator), Vihinen, M. (Creator), Tampere University of Technology, 2017

    Dataset

  7. Supplementary data for "Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis"

    Thorsen, K. (Creator), Schepeler, T. (Creator), Oster, B. (Creator), Rasmussen, M. H. (Creator), Vang, S. (Creator), Wang, K. (Creator), Hansen, K. Q. (Creator), Lamy, P. (Creator), Pedersen, J. S. (Creator), Eller, A. (Creator), Mansilla, F. (Creator), Laurila, K. K. (Creator), Wiuf, C. (Creator), Laurberg, S. (Creator), Dyrskjot, L. (Creator), Orntoft, T. F. (Creator), Andersen, C. L. (Creator), Tampere University of Technology, 2017

    Dataset

  8. Supplementary data for "In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps"

    Kandhavelu, M. (Creator), Mannerström, H. O. W. (Creator), Gupta, A. (Creator), Häkkinen, A. E. (Creator), Lloyd-Price, J. R. (Creator), Yli-Harja, O. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017

    Dataset

  9. Supplementary data for "A Beta-mixture model for dimensionality reduction, sample classification and analysis"

    Laurila, K. (Creator), Oster, B. (Creator), Andersen, C. L. (Creator), Lamy, P. (Creator), Orntoft, T. (Creator), Yli-Harja, O. (Creator), Wiuf, C. (Creator), Tampere University of Technology, 2017

    Dataset

  10. Supplementary data for "An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation"

    Äijö, T. (Creator), Edelman, S. M. (Creator), Lönnberg, T. (Creator), Larjo, A. J. (Creator), Kallionpää, H. (Creator), Tuomela, S. (Creator), Engström, E. (Creator), Lahesmaa, R. (Creator), Lähdesmäki, H. (Creator), Tampere University of Technology, 2017

    Dataset

  11. Supplementary data for "Bioprocess data mining using regularized regression and random forests"

    Hassan, S. (Creator), Farhan, M. (Creator), Mangayil, R. (Creator), Huttunen, H. (Creator), Aho, T. (Creator), Tampere University of Technology, 2017

    Dataset

  12. Supplementary data for "Comprehensive molecular portraits of human breast tumours"

    Koboldt, D. C. (Creator), Fulton, R. S. (Creator), McLellan, M. D. (Creator), Schmidt, H. (Creator), Kalicki-Veizer, J. (Creator), McMichael, J. F. (Creator), Fulton, L. L. (Creator), Dooling, D. J. (Creator), Ding, L. (Creator), Mardis, E. R. (Creator), Wilson, R. K. (Creator), Ally, A. (Creator), Balasundaram, M. (Creator), Butterfield, Y. S. N. (Creator), Carlsen, R. (Creator), Carter, C. (Creator), Chu, A. (Creator), Chuah, E. (Creator), Chun, H. E. (Creator), Erkkilä, T. (Creator), Tampere University of Technology, 2017

    Dataset

  13. Supplementary data for "Integrated genomic characterization of endometrial carcinoma"

    Getz, G. (Creator), Gabriel, S. B. (Creator), Cibulskis, K. (Creator), Lander, E. (Creator), Sivachenko, A. (Creator), Sougnez, C. (Creator), Lawrence, M. (Creator), Kandoth, C. (Creator), Dooling, D. (Creator), Fulton, R. (Creator), Fulton, L. (Creator), Kalicki-Veizer, J. (Creator), McLellan, M. D. (Creator), O'Laughlin, M. (Creator), Schmidt, H. (Creator), Wilson, R. K. (Creator), Ye, K. (Creator), Li, D. (Creator), Ally, A. (Creator), Annala, M. J. (Creator), Tampere University of Technology, 2017

    Dataset

  14. Supplementary data for "Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress"

    Urmersbach, S. (Creator), Aho, T. (Creator), Alter, T. (Creator), Hassan, S. (Creator), Autio, R. A. (Creator), Huehn, S. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3607616

    Dataset

  15. Supplementary data for "Physical activity, body mass index and heart rate variability-based stress and recovery in 16 275 Finnish employees: a cross-sectional study"

    Föhr, T. (Creator), Pietilä, J. (Creator), Helander, E. (Creator), Myllymäki, T. (Creator), Lindholm, H. (Creator), Rusko, H. (Creator), Kujala, U. M. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3598376

    Dataset

  16. Supplementary data for "Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas"

    Lehtinen, B. (Creator), Raita, A. (Creator), Kesseli, J. (Creator), Annala, M. (Creator), Nordfors, K. (Creator), Yli-Harja, O. (Creator), Zhang, W. (Creator), Visakorpi, T. (Creator), Nykter, M. (Creator), Haapasalo, H. (Creator), Granberg, K. J. (Creator), Tampere University of Technology, 2017, 10.6084/m9.figshare.c.3770810

    Dataset

  17. Supplementary data for "Robustness and Information Propagation in Attractors of Random Boolean Networks"

    Lloyd-Price, J. R. (Creator), Gupta, A. (Creator), Ribeiro, A. S. (Creator), Tampere University of Technology, 2017

    Dataset

  18. Supplementary data for "Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles"

    Tuomela, S. (Creator), Autio, R. A. (Creator), Buerki-Thurnherr, T. (Creator), Arslan, O. (Creator), Kunzmann, A. (Creator), Andersson-Willman, B. (Creator), Wick, P. (Creator), Mathur, S. (Creator), Scheynius, A. (Creator), Krug, H. F. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Tampere University of Technology, 2017

    Dataset

  19. Supplementary data for "Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis"

    Härmä, V. (Creator), Schukov, H. (Creator), Happonen, A. P. (Creator), Ahonen, I. (Creator), Virtanen, J. (Creator), Siitari, H. (Creator), Åkerfelt, M. (Creator), Lötjönen, J. (Creator), Nees, M. (Creator), Tampere University of Technology, 2017

    Dataset

  20. Supplementary data for "Adipose Tissue Dysfunction and Altered Systemic Amino Acid Metabolism Are Associated with Non-Alcoholic Fatty Liver Disease"

    Cheng, S. (Creator), Wiklund, P. (Creator), Autio, R. A. (Creator), Borra, R. (Creator), Ojanen, X. (Creator), Xu, L. (Creator), Törmäkangas, T. (Creator), Alen, M. (Creator), Tampere University of Technology, 2017

    Dataset

  21. Supplementary data for "Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis"

    Pajula, J. T. (Creator), Kauppi, J. (Creator), Tohka, J. P. (Creator), Tampere University of Technology, 2017

    Dataset

  22. Supplementary data for "Information-Theoretic Analysis of the Dynamics of an Executable Biological Model"

    Sadot, A. (Creator), Sarbu, S. (Creator), Kesseli, J. M. E. (Creator), Amir-Kroll, H. (Creator), Zhang, W. (Creator), Nykter, M. (Creator), Shmulevich, I. (Creator), Tampere University of Technology, 2017

    Dataset

  23. Supplementary data for "A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays"

    Annala, M. J. (Creator), Laurila, K. (Creator), Lähdesmäki, H. (Creator), Nykter, M. P. M. (Creator), Tampere University of Technology, 2017

    Dataset

  24. Supplementary data for "NanoMiner — Integrative Human Transcriptomics Data Resource for Nanoparticle Research"

    Kong, L. (Creator), Tuomela, S. (Creator), Hahne, L. (Creator), Ahlfors, H. (Creator), Yli-Harja, O. (Creator), Fadeel, B. (Creator), Lahesmaa, R. (Creator), Autio, R. A. (Creator), Tampere University of Technology, 2017

    Dataset

  25. Supplementary data for "Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network"

    Aho, T. (Creator), Almusa, H. (Creator), Matilainen, J. (Creator), Larjo, A. J. (Creator), Ruusuvuori, P. (Creator), Aho, K. (Creator), Wilhelm, T. (Creator), Lähdesmäki, H. J. (Creator), Beyer, A. (Creator), Harju, M. (Creator), Chowdhury, S. M. H. (Creator), Leinonen, K. O. (Creator), Roos, C. (Creator), Yli-Harja, O. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0010662.s001

    Dataset

  26. Supplementary data for "Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework"

    Mäki-Marttunen, T. M. (Creator), Acimovic, J. (Creator), Ruohonen, K. P. (Creator), Linne, M. (Creator), Tampere University of Technology, 2017

    Dataset

  27. Supplementary data for "Fluctuations of Hi-Hat Timing and Dynamics in a Virtuoso Drum Track of a Popular Music Recording"

    Räsänen, E. (Creator), Pulkkinen, O. I. (Creator), Virtanen, T. (Creator), Zollner, M. (Creator), Hennig, H. (Creator), Tampere University of Technology, 2017, 10.1371/journal.pone.0127902.s001

    Dataset

  28. Supplementary data for "In Vivo Transcription Kinetics of a Synthetic Gene Uninvolved in Stress-Response Pathways in Stressed Escherichia coli Cells"

    Muthukrishnan, A. B. (Creator), Martikainen, A. (Creator), Neeli Venkata, R. (Creator), Sanches Ribeiro, A. (Creator), Tampere University of Technology, 2017

    Dataset

  29. Supplementary data for "Compensation of Missing Wedge Effects with Sequential Statistical Reconstruction in Electron Tomography"

    Paavolainen, L. (Creator), Acar, E. (Creator), Tuna, U. (Creator), Peltonen, S. (Creator), Moriya, T. (Creator), Soonsawad, P. (Creator), Marjomäki, V. (Creator), Cheng, R. H. (Creator), Ruotsalainen, U. (Creator), Tampere University of Technology, 2017

    Dataset

  30. TUT Acoustic scenes 2016, Development dataset

    Mesaros, A. (Creator), Heittola, T. (Creator), Virtanen, T. (Creator), Tampere University of Technology, 8 Feb 2016, 10.5281/zenodo.45739

    Dataset

  31. TUT Sound events 2016, Development dataset

    Mesaros, A. (Creator), Heittola, T. (Creator), Virtanen, T. (Creator), Tampere University of Technology, 8 Feb 2016, 10.5281/zenodo.45759

    Dataset

ID: 22336