Tampere University of Technology

TUTCRIS Research Portal

Department of Signal Processing

Research unit: Department

  1. Published

    Sorad: A systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements

    Äijö, T., Granberg, K. & Lähdesmäki, H., 2013, In : Bioinformatics. 29, 10, p. 1283-1291 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Learning gene regulatory networks with delayed ODEs and continuous-time expression representation

    Äijö, T. & Lähdesmäki, H., 2009, Abstracts of the 2009 Joint RECOMB Satellite Conference on Regulatory Genomics - Systems Biology - Dream4, Boston, USA, 2-6 December 2009. p. p. 146

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  3. Published

    Learning gene regulatory networks with delayed ODEs and continuous-time expression representation

    Äijö, T., Yli-Harja, O. & Lähdesmäki, H., 2010, Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series. Nykter, M., Ruusuvuori, P., Carlberg, C. & Yli-Harja, O. (eds.). p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Published

    Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics

    Äijö, T., 2009, Proceedings of the 17th Annual International Conference on Intellicent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), Stockholm, Sweden, June 27 - July 2, 2009. p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  5. Published

    An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation

    Äijö, T., Edelman, S., Lönnberg, T., Larjo, A., Kallionpää, H., Tuomela, S., Engström, E., Lahesmaa, R. & Lähdesmäki, H., 2012, In : BMC Genomics. 13, 572.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Significant improvements in translating the Parks-McClellan algorithm from its FORTRAN code to its corresponding MATLAB code

    Ahsan, M. & Saramäki, T., 2009, Proceedings of 2009 IEEE International Symposium on Circuits and Systems, ISCAS 2009, Taipei, Taiwan, 24-27 May 2009. p. 289-292

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Published

    Two Novel Implementations of the Remez Multiple Exchange Algorithm for Optimum FIR Filter Design

    Ahsan, M. & Saramäki, T., 2012, MATLAB - A Fundamental Tool for Scientific Computing and Engineering Applications. Katsikis, V. (ed.). Rijeka, Croatia: InTech, p. 37-66 Chapter 3

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  8. Published

    A novel technique to design optimum FIR digital filters with different transition bandwidths

    Ahsan, M., Saramäki, T. & Gabbouj, M., 2012, Proceedings of 54th International Symposium ELMAR-2012, September 12 - 14, Zadar, Croatia. Piscataway, NJ: Institute of Electrical and Electronics Engineers IEEE, p. 125-128 (International Symposium ELMAR).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Published

    A Matlab based optimum multiband FIR filters design program following the orignal idea of the Remez multiple exchange algorithm

    Ahsan, M. & Saramäki, T., 2011, IEEE International Symposium on Circuits and Systems ISCAS, 15-18 May 2011, Rio de Janeiro, Brazil. Piscataway, NJ: IEEE, p. 137-140 (IEEE International Symposium on Circuits and Systems ISCAS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  10. Published

    An Analog/Digital VLSI Circuit for an Advanced Particle Detector

    Ahola, K., Rantalainen, H., Suutari, J. & Tenhunen, H., 1988, Proc. 4 Finnish Conference on Physics in Industry, Tampere, Finland, September 28-29, 1988. p. 75-80

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  11. Published

    VLSI Circuit Design for Harsh Environment

    Ahola, K., Koivunen, T., Tenhunen, H. & Vähätalo, A., 1988, Proc. 4 Finnish Conference on Physics in Industry, Tampere, Finland, September 28-29, 1988. p. 69-74

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  12. Published

    Laskennallisen systeemibiologian työkaluja Coronalla

    Aho, T., Larjo, A., Kesseli, J., Lähdesmäki, H., Ahdesmäki, M., Leinonen, K. & Yli-Harja, O., 2006, In : @CSC. 3, p. 3-5

    Research output: Contribution to journalArticleProfessional

  13. Published

    Finding infeasible reactions in metabolic networks: comparison of methods

    Aho, T., Wilhelm, T., Beyer, A., Schuster, S. & Yli-Harja, O., 2006, Proceedings of the 4th TICSP Workshop on Computational Systems Biology, WCSB 2006, Tampere, Finland, 12-13 June 2006. TICSP series. Ruusuvuori, P. (ed.). p. 23-26

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    Computational tool for strain design: maximizing yields in metabolic systems

    Aho, T., Mallol Parera, R., Larjo, A. & Yli-Harja, O., 2008, Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008, Leipzig, Germany, 11-13 June 2008. Ahdesmäki, M. (ed.). p. 13-15

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Parameter estimation for a biochemical network model

    Aho, T., 2004, Proceedings of the 2nd TICSP Workshop on Computational Systems Biology, WCSB'2004, Silja Opera, Helsinki-St.Petersburg, 14-16 June 2004. Aho, T., Lähdesmäki, H. & Yli-Harja, O. (eds.). p. 27-28

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  16. Published

    SBML formatted kinetic law library for biochemical reactions

    Aho, T. & Yli-Harja, O., 2005, Proceedings of The 3rd TICSP Workshop on Computational Systems Biology, WCSB 2005, Tampere, Finland, 13-14 June 2005. Manninen, T. (ed.). p. 41-42

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  17. Published

    Boolean verkkojen analyysityökalu Coronalla

    Aho, T., Larjo, A., Kesseli, J., Lähdesmäki, H., Ahdesmäki, M., Leinonen, K. & Yli-Harja, O., 2006, In : @CSC. 4, p. 3-4

    Research output: Contribution to journalArticleProfessional

  18. Published

    Optimal load clipping with time of use rates

    Aho, I., Klapuri, H., Saarinen, J. & Mäkinen, E., 1998, In : Electrical Power & Energy Systems. 20, 4, p. 269-280

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Construction of a computational data analysis pipeline using a workflow system

    Aho, K-L., Kerkelä, E., Yli-Harja, O. & Roos, C., 2010, Proceedings of the Seventh International Workshop on Computational Systems Biology, WCSB 2010, Luxembourg, June 16-18, 2010. TICSP Series. Nykter, M., Ruusuvuori, P., Carlberg, C. & Yli-Harja, O. (eds.). p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Published

    Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

    Aho, T., Almusa, H., Matilainen, J., Larjo, A., Ruusuvuori, P., Aho, K-L., Wilhelm, T., Lähdesmäki, H., Beyer, A., Harju, M., Chowdhury, S., Leinonen, K., Roos, C. & Yli-Harja, O., 2009, Abstracts of the 2009 Joint RECOMB Satellite Conference on Regulatory Genomics - Systems Biology - Dream4, Boston, USA, 2-6 December 2009. p. p. 266

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

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