Tampere University of Technology

TUTCRIS Research Portal

Department of Signal Processing

Research unit: Department

  1. A1 Journal article-refereed
  2. Published

    LDPC FEC Code Extension for Unequal Error Protection in DVB-T2 System: Design and Evaluation

    Kondrad, L., Bouazizi, I. & Gabbouj, M., 2012, In : International Journal of Digital Multimedia Broadcasting. 2012, p. 1-11 11 p., 834924.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Effects of Mg2+ on in vivo transcriptional dynamics of the lar promoter

    Kandhavelu, M., Lihavainen, E., Muthukrishnan, A., Yli-Harja, O. & Ribeiro, A., 2012, In : Biosystems. 107, 3, p. 129-134

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Dynamics of transcription driven by the tetA promoter, one event at a time, in live Escherichia coli cells

    Muthukrishnan, A., Kandhavelu, M., Lloyd-Price, J., Kudasov, F., Chowdhury, S., Yli-Harja, O. & Ribeiro, A. S., 2012, In : Nucleic Acids Research. 40, 17, p. 8472-8483

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Phase retrieval via spatial light modulator phase modulation in 4f optical setup: Numerical inverse imaging with sparse regularization for phase and amplitude

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 1, p. 105-116 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Stagewise K-SVD to Design Efficient Dictionaries for Sparse Representations

    Rusu, C. & Dumitrescu, B., 2012, In : IEEE Signal Processing Letters. 19, 10, p. 631-634

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Probabilistic RNA partitioning generates transient increases in the normalized variance of RNA numbers in synchronized populations of Escherichia coli

    Lloyd-Price, J., Lehtivaara, M., Kandhavelu, M., Chowdhury, S., Muthukrishnan, A-B., Yli-Harja, O. & Ribeiro, A. S., 2012, In : Molecular Biosystems. 8, p. 565-571

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    "Quorum sensing" generated multistability and chaos in a synthetic genetic oscillator

    Potapov, I., Zhurov, B. & Volkov, E., 2012, In : Chaos. 22, 2, 023117.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Voice Conversion Using Dynamic Kernel Partial Least Squares Regression

    Helander, E., Silen, H., Virtanen, T. & Gabbouj, M., 2012, In : IEEE Transactions on Audio Speech and Language Processing. 20, 3, p. 806-817

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Rate adaptation for dynamic adaptive streaming over HTTP in content distribution network

    Liu, C., Bouazizi, I., Hannuksela, M. M. & Gabbouj, M., 2012, In : Signal Processing: Image Communication. 27, 4, p. 288-311

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Both Inhibition and Enhanced Expression of miR-31 Lead to Reduced Migration and Invasion of Pancreatic Cancer Cells

    Laurila, E., Sandström, S., Rantanen, L., Autio, R. & Kallioniemi, A., 2012, In : Genes Chromosomes and Cancer. 51, 6, p. 557-568

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Collective Network of Binary Classifier Framework for Polarimetric SAR Image Classification: An Evolutionary Approach

    Kiranyaz, S., Ince, T., Uhlmann, S. & Gabbouj, M., 2012, In : IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics. 42, 4, p. 1169-1186

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Implementation of Dyadic Convolution Operators on Graphic Processors

    Gajic, D. B., Stankovic, R. & Radmanovic, M., 2012, In : International Journal of Reasoning-Based Intelligent Systems. 4, 1/2, p. 82-90

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation

    Äijö, T., Edelman, S., Lönnberg, T., Larjo, A., Kallionpää, H., Tuomela, S., Engström, E., Lahesmaa, R. & Lähdesmäki, H., 2012, In : BMC Genomics. 13, 572.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Androgen-regulated miR-32 targets BTG2 and is overexpressed in castration-resistant prostate cancer

    Jalava, S., Urbanucci, A., Latonen, L., Waltering, K., Sahu, B., Jänne, O., Seppälä, J., Lähdesmäki, H., Tammela, T. & Visakorpi, T., 2012, In : Oncogene. 31, 41, p. 4460-4471

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Mytoe: Automatic analysis of mitochondrial dynamics

    Lihavainen, E., Mäkelä, J., Spelbrink, J. N. & Ribeiro, A. S., 2012, In : Bioinformatics. 28, 7, p. 1050-1051

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Multimodal Extraction of Events and Information about the Recording Activity in User Generated Videos

    Cricri, F., Dabov, K., Curcio, I. D. D., Mate, S. & Gabbouj, M., 2012, In : Multimedia Tools and Applications.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Effects of Codon Sequence on the Dynamics of Genetic Networks

    Potapov, I., Mäkelä, J., Yli-Harja, O. & Ribeiro, A. S., 2012, In : Journal of Theoretical Biology. 315, p. 17-25

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Iterative reweighted l(1) design of sparse FIR filters

    Rusu, C. & Dumitrescu, B., 2012, In : Signal Processing. 92, 4, p. 905-911

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    pre-piRNA biogenesis mimics the pathway of miRNA

    Kandhavelu, M. & Kandhavelu, J., 2012, In : Biochemical Systematics and Ecology. 43, p. 200-204 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    The Impact of Sampling Density Upon Cortical Network Analysis: Regions or Points

    Tohka, J., He, Y. & Evans, A. C., 2012, In : Magnetic Resonance Imaging. 30, 7, p. 978-992

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Dynamics of Transcription of Closely Spaced Promoters in Escherichia coli, One Event at a Time

    Martins, L., Mäkelä, J., Häkkinen, A., Kandhavelu, M., Yli-Harja, O., Fonseca, J. & Ribeiro, A., 2012, In : Journal of Theoretical Biology. 301, p. 83-94

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Variable Selection by sNML Criterion in Logistic Regression with an Application to a Risk-Adjustment Model for Hip Fracture Mortality

    Liski, A., Tabus, I., Sund, R. & Häkkinen, U., 2012, In : Journal of Data Science. 10, 2, p. 321-343

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation

    Gold, E. S., Ramsey, S. A., Sartain, M. J., Selinummi, J., Podolsky, I., Rodriguez, D. J., Moritz, R. L. & Aderem, A., 2012, In : Journal of Experimental Medicine. 209, 4, p. 807-817

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Inverse polynomial reconstruction method in DCT domain

    Dadkhahi, H., Gotchev, A. & Egiazarian, K., 2012, In : Eurasip Journal on Advances in Signal Processing. 133

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Sensor module for hydraulic boom state feedback control

    Honkakorpi, J., Vihonen, J. & Mattila, J., 2012, In : International Journal of Fluid Power. 13, 3, p. 15-23

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Multiview depth coding based on combined color/depth segmentation

    Ruiz-Hidalgo, J., Morros, J. R., Aflaki, P., Calderero, F. & Marques, F., 2012, In : Journal of Visual Communication and Image Representation. 23, 1, p. 42-52

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Identification of early gene expression changes during human Th17 cell differentiation

    Tuomela, S., Salo, V., Tripathi, S. K., Chen, Z., Laurila, K., Gupta, B., Äijö, T., Oikari, L., Stockinger, B., Lähdesmäki, H. & Lahesmaa, R., 2012, In : Blood. 119, 23, p. E151-E160

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Multimodal Semantics Extraction from User-Generated Videos

    Cricri, F., Dabov, K., Roininen, M., Mate, S., Curcio, I. & Gabbouj, M., 2012, In : Advances in Multimedia. 2012, p. 1-17 17 p., 292064.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Methods for depth-map filtering in view-plus-depth 3D video representation

    Smirnov, S., Gotchev, A. & Egiazarian, K., 2012, In : Eurasip Journal on Advances in Signal Processing. 25, p. 1-21 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Greedy Sparse RLS

    Dumitrescu, B., Onose, A., Helin, P. & Tabus, I., 2012, In : IEEE Transactions on Signal Processing. 60, 5, p. 2194-2207

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    SGNS2 : a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations

    Lloyd-Price, J., Gupta, A. & Ribeiro, A. S., 2012, In : Bioinformatics. 28, 22, p. 3004-3005

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Asymmetric Disposal of Individual Protein Aggregates in Escherichia coli, One Aggregate at a Time

    Lloyd-Price, J., Häkkinen, A., Kandhavelu, M., Marques, I. J., Chowdhury, S., Lihavainen, E., Yli-Harja, O. & Ribeiro, A. S., 2012, In : Journal of Bacteriology. 197, 7, p. 1747-1752

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Design of multiple-valued logic networks with regular structure by using spectral representations

    Stankovic, R., Astola, J. & Moraga, C., 2012, In : Journal of Multiple-Valued Logic and Soft Computing. 19, 1-3, p. 251-269

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Single-molecule dynamics of transcription of the lar promoter

    Kandhavelu, M., Häkkinen, A., Yli-Harja, O. & Ribeiro, A., 2012, In : Physical Biology. 9, 2, p. 1-7 7 p., 026004.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Evolutionary RBF classifier for polarimetric SAR images

    Ince, T., Kiranyaz, S. & Gabbouj, M., 2012, In : Expert Systems with Applications. 39, 5, p. 4710-4717

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    High-accuracy wave field reconstruction: Decoupled inverse imaging with sparse modeling of phase and amplitude

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 1, p. 44-54

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Chemical castration and anti-androgens induce differential gene expression in prostate cancer

    Lehmusvaara, S., Erkkilä, T., Urbanucci, A., Waltering, K., Seppälä, J., Larjo, A., Tuominen, V., Isola, J., Kujala, P., Lähdesmäki, H., Kaipia, A., Tammela, T. & Visakorpi, T., 2012, In : Journal of Pathology. 227, 3, p. 336-345

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Audio-video synchronous coding based on motion estimation in H.264

    Li, X., Chen, H., Chen, M. & Gabbouj, M., 2012, In : Jilin Daxue Xuebao. 42, 5, p. 1321-1326

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Comprehensive molecular portraits of human breast tumours

    Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., Fulton, L. L., Dooling, D. J., Ding, L., Mardis, E. R., Wilson, R. K., Ally, A., Balasundaram, M., Butterfield, Y. S. N., Carlsen, R., Carter, C., Chu, A., Chuah, E., Chun, H-J. E. & Erkkilä, T., 2012, In : Nature. 490, 7418, p. 61-70

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis

    Pajula, J., Kauppi, J-P. & Tohka, J., 2012, In : PLoS ONE. 7, 8, p. 1-22 22 p., e41196.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    BM3D Frames and Variational Image Deblurring

    Danielyan, A., Katkovnik, V. & Egiazarian, K., 2012, In : IEEE Transactions on Image Processing. 21, 4, p. 1715-1728

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Multichannel Audio Upmixing by Time-Frequency Filtering Using Non-Negative Tensor Factorization

    Nikunen, J., Virtanen, T. & Vilermo, M., 2012, In : Journal of the Audio Engineering Society. 60, 10, p. 794-806

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation

    Närvä, E., Rahkonen, N., Reddy Emani, M., Lund, R., Pursiheimo, J-P., Nästi, J., Autio, R., Rasool, O., Denessiouk, K., Lähdesmäki, H., Rao, A. & Lahesmaa, R., 2012, In : Stem Cells. 30, 3, p. 452-460

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Compressive sensing computational ghost imaging

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 8, p. 1556-1567

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Insulin-like growth factor-binding protein 2-driven glioma progression is prevented by blocking a clinically significant integrin, integrin-linked kinase, and NF-kB network

    Holmes, K., Annala, M., Chua, C., Dunlap, S., Liu, Y., Hugen, N., Moore, L., Cogdell, D., Hu, L., Nykter, M., Hess, K., Fuller, G. & Zhang, W., 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 9, p. 3475-3480

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Power Consumption Analysis of Constant Bit Rate Video Transmission Over 3G Networks

    Ukhanova, A., Belyaev, E., Wang, L. & Forchhammer, S., 2012, In : Computer Communications. 35, 14, p. 1695-1706

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Regulation of Mean and Noise of the in Vivo Kinetics of Transcription Under the Control of the lac/ara-1 Promoter

    Kandhavelu, M., Lloyd-Price, J., Gupta, A., Muthukrishnan, A-B., Yli-Harja, O. & Ribeiro, A. S., 2012, In : FEBS Letters. 586, 21, p. 3870-3875

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Stereoscopic Depth Cues Outperform Monocular Ones on Autostereoscopic Display

    Mikkola, M., Jumisko-Pyykkö, S., Strohmeier, D., Boev, A. & Gotchev, A., 2012, In : IEEE Journal of Selected Topics in Signal Processing. 6, 6, p. 698-709

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Genetic variation may play crucial role in non-coding RNA Biogenesis

    Kandhavelu, J. & Kandhavelu, M., 2012, In : American Journal of Molecular Biology. 2012, 2, p. 386-389 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Androgen receptor (AR) aberrations in castration-resistant prostate cancer

    Waltering, K., Urbanucci, A. & Visakorpi, T., 2012, In : Molecular and Cellular Endocrinology. 360, 1-2, p. 38-43

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer

    Kuuselo, R., Savinainen, K., Sandström, S., Autio, R. & Kallioniemi, A., 2011, In : International Journal of Cancer. 129, 11, p. 2553-2565

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

    Annala, M., Laurila, K., Lähdesmäki, H. & Nykter, M., 2011, In : PLoS ONE. 6, 5, p. 1-13 13 p., e20059.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Stochastic approximation driven particle swarm optimization with simultaneous perturbation - Who will guide the guide?

    Kiranyaz, S., Ince, T. & Gabbouj, M., 2011, In : Applied Soft Computing. 11, 2, p. 2334-2347

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Personalized long-term ECG classification: A systematic approach

    Kiranyaz, S., Ince, T., Pulkkinen, J. & Gabbouj, M., 2011, In : Expert Systems with Applications. 38, 4, p. 3220-3226

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Musical Instrument Sound Multi-Excitation Model for Non-negative Spectrogram Factorization

    Carabias-Orti, J. J., Virtanen, T., Vera-Candeas, P., Ruiz-Reyes, N. & Canadas-Quesada, F. J., 2011, In : IEEE Journal of Selected Topics in Signal Processing. 5, 6, p. 1144-1158

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Wave Field Reconstruction From Multiple Plane Intensity-Only Data: Augmented Lagrangian Algorithm

    Migukin, A., Katkovnik, V. & Astola, J., 2011, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 28, 6, p. 993-1001

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Point Pattern Matching for 2-D Point Sets with Regular Structure

    Manninen, T., Rönkkä, R. & Huttunen, H., 2011, In : Lecture Notes in Computer Science. 6688, p. 156-165

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models

    Manninen, T., Hituri, K., Toivari, E. & Linne, M-L., 2011, In : Eurasip Journal on Bioinformatics and Systems Biology. 2011, p. 1-11 11 p., 797250.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    CORDIC instructions for LDPC decoding on SDR platforms

    Senthilvelan, M., Yu, M., Iancu, D., Sima, M. & Schulte, M., 2011, In : Analog Integrated Circuits and Signal Processing. 69, 2-3, p. 191-206

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    Effects of Transmitters and Amyloid-Beta Peptide on Calcium Signals in Rat Cortical Astrocytes: Fura-2AM Measurements and Stochastic Model Simulations

    Toivari, E., Manninen, T., Nahata, A. K., Jalonen, T. O. & Linne, M-L., 2011, In : PLoS ONE. 6, 3, p. 1-9 9 p., e17914.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Complexity analysis of adaptive binary arithmetic coding software implementations

    Belyaev, E., Veselov, A., Turlikov, A. & Liu, K., 2011, In : Lecture Notes in Computer Science. 6869, p. 598-607

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Teleconsultation: Changes in technology and costs over a 12-year period

    Lamminen, J., Forsvik, H. J., Voipio, V. & Ruohonen, K., 2011, In : Journal of Telemedicine and Telecare. 17, 8, p. 412-416

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Multi-dimensional particle swarm optimization in dynamic environments

    Kiranyaz, S., Pulkkinen, J. & Gabbouj, M., 2011, In : Expert Systems with Applications. 38, 3, p. 2212-2223

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors

    Ylipää, A., Hunt, K. K., Yang, J., Lazar, A. J. F., Torres, K. E., Lev, D. C., Nykter, M., Pollock, R. E., Trent, J. & Zhang, W., 2011, In : Cancer. 117, 2, p. 380-389

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Learning of paw preference in mice is strain dependent, gradual and based on short-term memory of previous reaches

    Ribeiro, A. S., Eales, B. A. & Biddle, F. G., 2011, In : ANIMAL BEHAVIOUR. 81, 1, p. 249-257

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Required levels of catalysis for emergence of autocatalytic sets in models of chemical reaction systems

    Hordijk, W., Kauffman, S. A. & Steel, M., 2011, In : International Journal of Molecular Sciences. 12, 5, p. 3085-3101

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Dynamic Queries with Relevance Feedback for Content Based Image Retrieval

    Birinci, M., Guldogan, E. & Gabbouj, M., 2011, In : Lecture Notes in Computer Science. 6761, p. 547-554

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Prediction and Transmission Optimization of Video Guaranteeing a Bounded Zapping-Delay in DVB-H

    Vadakital, V. K. M. & Gabbouj, M., 2011, In : IEEE Transactions on Broadcasting. 57, 2, p. 231-245

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Uniform Motion Blur in Poissonian Noise: Blur/Noise Tradeoff

    Boracchi, G. & Foi, A., 2011, In : IEEE Transactions on Image Processing. 20, 2, p. 592-598

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter

    Smolander, O-P., Kandhavelu, M., Mannerström, H., Lihavainen, E., Kalaichelvan, S., Healy, S., Yli-Harja, O., Karp, M. & Ribeiro, A. S., 2011, In : BMC Molecular Biology. 12, p. 1-27 27 p., 21.

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Stochastic sequence-level model of coupled transcription and translation in prokaryotes

    Mäkelä, J., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : BMC Bioinformatics. 12, p. 1-33 33 p., 121.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Circulating Plasma MiR-141 Is a Novel Biomarker for Metastatic Colon Cancer and Predicts Poor Prognosis

    Cheng, H., Zhang, L., Cogdell, D. E., Zheng, H., Schetter, A. J., Nykter, M., Harris, C. C., Chen, K., Hamilton, S. R. & Zhang, W., 2011, In : PLoS ONE. 6, 3, p. 1-8 8 p., e17745.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Copy number variation and selection during reprogramming to pluripotency

    Hussein, S. M., Batada, N. N., Vuoristo, S., Ching, R. W., Autio, R., Narva, E., Ng, S., Sourour, M., Hämäläinen, R., Olsson, C., Lundin, K., Mikkola, M., Trokovic, R., Peitz, M., Bruestle, O., Bazett-Jones, D. P., Alitalo, K., Lahesmaa, R., Nagy, A. & Otonkoski, T., 2011, In : Nature. 471, 7336, p. 58-62

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    A Beta-mixture model for dimensionality reduction, sample classification and analysis

    Laurila, K., Osre, B., Andersen, C. L., Lamy, P., Orntoft, T., Yli-Harja, O. & Wiuf, C., 2011, In : BMC Bioinformatics. 12, p. 1-6 6 p., 215.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    In Vivo Kinetics of Transcription initiation of the Lar Promoter in Escherichia coli. Evidence for a Sequential Mechanism with Two Rate-Limiting Steps

    Kandhavelu, M., Mannerström, H., Gupta, A., Häkkinen, A., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : BMC Systems Biology. 5, p. 1-9 9 p., 149.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering

    Santala, S., Efimova, E., Kivinen, V., Larjo, A., Aho, T., Karp, M. & Santala, V., 2011, In : Microbial Cell Factories. 10, 36, p. 1-10 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    Probing Stochastic Phenotype Switching as a Survival Strategy in Fluctuating Environments

    Ribeiro, A. S. & Häkkinen, A., 2011, In : International Journal of Computational Intelligence in Control. 3, 1, p. 9-15

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Recursive FIR filter structures on FPGA

    Lehto, R., Tauren, T. & Vainio, O., 2011, In : Microprocessors and Microsystems. 35, 7, p. 595-602

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Three-Dimensional Media for Mobile Devices

    Gotchev, A., Akar, G. B., Capin, T., Strohmeier, D. & Boev, A., 2011, In : Proceedings of the IEEE. 99, 4, p. 708-741

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    Cancer Systems Biology: Signal Processing for Cancer Research

    Yli-Harja, O., Ylipää, A., Nykter, M. & Zhang, W., 2011, In : Chinese Journal of Cancer. 30, 4, p. 221-225

    Research output: Contribution to journalArticleScientificpeer-review

  82. Published

    An Efficient Algorithm for the optimization of FIR Filters Synthesized Using the Multistage Frequency-Response Masking Approach

    Yli-Kaakinen, J. & Saramäki, T., 2011, In : Circuits, Systems and Signal Processing. 30, 1, p. 157-183

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    Implementation of Linear-Phase FIR Filters for a Rational Sampling-Rate Conversion Utilizing the Coefficient Symmetry

    Bregovic, R., Yu, Y. J., Saramäki, T. & Lim, Y. C., 2011, In : IEEE Transactions on Circuits and Systems. Part 1: Regular Papers. 58, 3, p. 548-561

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    A systems biological approach to identify key transcription factors and their genomic neighborhoods in human sarcomas

    Ylipää, A., Yli-Harja, O., Zhang, W. & Nykter, M., 2011, In : Chinese Journal of Cancer. 30, 1, p. 27-40

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Computational study of noise in a large signal transduction network

    Intosalmi, J., Manninen, T., Ruohonen, K. & Linne, M-L., 2011, In : BMC Bioinformatics. 12, p. 1-8 8 p., 252.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Methodology for design of Antialiasing Filters for Autostereoscopic Displays

    Boev, A., Bregovic, R. & Gotchev, A., 2011, In : IET Signal Processing. 5, 3, p. 333-343

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Self-Similarity Measure for Assessment of Image Visual Quality

    Ponomarenko, N., Jin, L., Lukin, V. & Egiazarian, K., 2011, In : Lecture Notes in Computer Science. 6915, p. 459-470

    Research output: Contribution to journalArticleScientificpeer-review

  88. Published

    Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models

    Härmä, V., Knuuttila, M., Virtanen, J., Mirtti, T., Kohonen, P., Kovanen, P., Happonen, A., Kaewphan, S., Ahonen, I., Kallioniemi, O., Grafström, R., Lötjönen, J. & Nees, M., 2011, In : Oncogene. 31, p. 2075-2089

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    Dynamics of genetic toggle switch at the nucleotide and codon levels

    Potapov, I., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : Physical Review E. 84, 3, p. 1-9 9 p., 031903.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D

    Acimovic, J., Mäki-Marttunen, T., Havela, R., Teppola, H. & Linne, M-L., 2011, In : Eurasip Journal on Bioinformatics and Systems Biology. 2011, p. 1-13 13 p., 616382.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses

    Zak, D. E., Schmitz, F., Gold, E. S., Diercks, A. H., Peschon, J. J., Valvo, J. S., Niemistö, A., Podolsky, I., Fallen, S. G., Suen, R., Stolyar, T., Johnson, C. D., Kennedy, K. A., Hamilton, M. K., Siggs, O. M., Beutler, B. & Aderem, A., 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 28, p. 11536-11541

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli

    Mäkelä, J., Huttunen, H., Kandhavelu, M., Yli-Harja, O. & Ribeiro, A. S., 2011, In : Bioinformatics. 27, 19, p. 2714-2720

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Genomic and molecular characterization of malignant peripheral nerve sheath tumor identifies the IGF1R pathway as a primary target for treatment

    Yang, J., Ylipää, A., Sun, Y., Zheng, H., Chen, K., Nykter, M., Trent, J., Ratner, N., Lev, D. C. & Zhang, W., 2011, In : Clinical Cancer Research. 17, 24, p. 7563-7573

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Diversity of temporal correlations between genes in models of noisy and noiseless gene networks

    Ribeiro, A. S., Lloyd-Price, J., Chowdhury, S. & Yli-Harja, O., 2011, In : Biosystems. 104, 2-3, p. 136-144

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Analysis of a multi-wavelength multi-camera phase-shifting profilometric system for real-time operation

    Stoykova, E., Gotchev, A. & Sainov, V., 2011, In : Optics Communications. 284, 1, p. 88-97

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    An Algorithm for the Stochastic Simulation of Gene Expression and Heterogeneous Population Dynamics

    Charlebois, D. A., Intosalmi, J., Fraser, D. & Kaern, M., 2011, In : Communications in Computational Physics. 9, 1, p. 89-112 24 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    The miR-15a-miR-16-1 locus is homozygously deleted in a subset of prostate cancers

    Porkka, K. P., Oggm, E-L., Saramäki, O. R., Vessella, R. L., Pukkila, H., Lähdesmäki, H., van Weerden, W. M., Wolf, M., Kallioniemi, O. P., Jenster, G. & Visakorpi, T., 2011, In : Genes Chromosomes and Cancer. 50, 7, p. 499-509

    Research output: Contribution to journalArticleScientificpeer-review

  98. Published

    Optimal Inversion of the Anscombe Transformation in Low-Count Poisson Image Denoising

    Mäkitalo, M. & Foi, A., 2011, In : IEEE Transactions on Image Processing. 20, 1, p. 99-109 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    3DTV Broadcasting and Distribution Systems

    Hur, N., Lee, H., Lee, G. S., Lee, S. J., Gotchev, A. & Park, S-I., 2011, In : IEEE Transactions on Broadcasting. 57, 2, p. 395-407

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Optimal estimation

    Rissanen, J., 2011, In : Lecture Notes in Computer Science. 6925, p. 37-37

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    Performance on the AX-PET Demonstrator

    Beltrame, P., Bolle, E., Braem, A., Casella, C., Chesi, E., Clinthorne, N., De Leo, R., Dissetori, G., Djambazov, L., Fanti, V., Joram, C., Kagan, H., Lustermann, W., Meddi, F., Nappi, E., Nessi-Tedaldi, F., Oliver, J. F., Pauss, T., Rafecas, M., Renker, D., Rudge, A., Ruotsalainen, U., Schinzel, D., Schneider, T., Seguinot, J., Solevi, P., Stapnes, S., Tuna, U. & Weilhammer, P., 2011, In : Nuclear Physics B. 215, 1, p. 34-36

    Research output: Contribution to journalArticleScientificpeer-review

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