Tampere University of Technology

TUTCRIS Research Portal

Department of Signal Processing

Research unit: Department

  1. A1 Journal article-refereed
  2. Published

    Loss of PTEN is associated with aggressive behavior in ERG-positive prostate cancer

    Leinonen, K. A., Saramäki, O. R., Furusato, B., Kimura, T., Takahashi, H., Egawa, S., Suzuki, H., Keiger, K., Hahm, S. H., Isaacs, W. B., Tolonen, T. T., Stenman, U-H., Tammela, T. L. J., Nykter, M., Bova, G. S. & Visakorpi, T., 2013, In : Cancer Epidemiology Biomarkers and Prevention. 22, 12, p. 2333-2344 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Short-term and long-term memory deficits in handedness learning in mice with absent corpus callosum and reduced hippocampal commissure

    Ribeiro, A. S., Eales, B. A. & Biddle, F. G., 2013, In : Behavioural Brain Research. 245, p. 145-151 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Moving the Science of Behavioral Change into the 21st Century

    Saranummi, N., Spruijit-Mertz, D., Intille, S. S., Korhonen, I., Nilsen, W. J. & Pavel, M., 2013, In : IEEE Pulse. 4, 5, p. 22-24 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Active-set newton algorithm for overcomplete non-negative representations of audio

    Virtanen, T., Gemmeke, J. F. & Raj, B., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 11, p. 2277-2289 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Bistability in a stochastic RNA-mediated gene network

    Lloyd-Price, J. & Ribeiro, A. S., 2013, In : Physical Review E. 88, 3, p. 1-8 8 p., 032714.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma

    Parker, C., Annala, M., Cogdell, D., Granberg, K., Sun, Y., Ji, P., Li, X., Gumin, J., Zheng, H., Hu, L., Yli-Harja, O., Haapasalo, H., Visakorpi, T., Liu, X., Liu, C., Sawaya, R., Fuller, G., Chen, K., Lang, F., Nykter, M. & Zhang, W., 2013, In : Journal of Clinical Investigation. 123, 2, p. 855-65 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Online blind speech separation using multiple acoustic speaker tracking and time-frequency masking

    Pertilä, P., 2013, In : Computer Speech and Language. 27, 3, p. 683-702 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Automatic Music Transcription: Challenges and Future Directions

    Benetos, E., Dixon, S., Giannoulis, D., Kirchhoff, H. & Klapuri, A., 2013, In : Journal of Intelligent Information Systems. 41, 3, p. 407-434 28 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Effects of temperature on the dynamics of the LacI-TetR-CI repressilator

    Chandraseelan, J. G., Oliveira, S. M. D., Häkkinen, A., Tran, H., Potapov, I., Sala, A., Kandhavelu, M. & Ribeiro, A. S., 2013, In : Molecular Biosystems. 9, 12, p. 3117-3123 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Effects of Rate-Limiting Steps in Transcription Initiation on Genetic Filter Motifs

    Häkkinen, A., Tran, H., Yli-Harja, O. & Ribeiro, A. S., 2013, In : PLoS ONE. 8, 8, p. 1-9 9 p., e70439.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Personal Health Technologies in Employee Health Promotion: Usage Activity, Usefulness, and Health-Related Outcomes in a 1-Year Randomized Controlled Trial

    Mattila, E., Orsama, A-L., Ahtinen, A., Hopsu, L., Leino, T. & Korhonen, I., 2013, In : JMIR Mhealth and Uhealth. 1, 2, p. 1-18 18 p., e16.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    POS3POLY-a MATLAB preprocessor for optimization with positive polynomials

    Sicleru, B. C. & Dumitrescu, B., 2013, In : Optimization and Engineering. 14, 2, p. 251-273

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Adaptive matching pursuit using coordinate descent and double residual minimization

    Onose, A. & Dumitrescu, B., 2013, In : Signal Processing. 93, 11, p. 3143-3150 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis

    Annila, T., Lihavainen, E., Marques, I. J., Williams, D. R., Yli-Harja, O. & Ribeiro, A. S., 2013, In : BMC Bioinformatics. 14, Suppl 10, 9 p., S5.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Audio Pitch Shifting Using the Constant-Q Transform

    Schörkhuber, C., Klapuri, A. & Sontacchi, A., 2013, In : Journal of the Audio Engineering Society. 61, 7-8, p. 562-572 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    A method for the design of Farrow-structure based variable fractional-delay FIR filters

    Eghbali, A., Johansson, H. & Saramäki, T., 2013, In : Signal Processing. 93, 5, p. 1341-1348 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Sparse Modeling for Lossless Audio Compression

    Ghido, F. & Tabus, I., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 1, p. 12-26

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Proprotein Convertase Subtilisin/Kexin Type 7 (PCSK7) Is Essential for the Zebrafish Development and Bioavailability of Transforming Growth Factor beta1a (TGFbeta1a)

    Turpeinen, H., Oksanen, A., Kivinen, V., Kukkurainen, S., Uusimäki, A., Räme, M., Parikka, M., Hytönen, V. P., Nykter, M. & Pesu, M., 2013, In : Journal of Biological Chemistry. 288, 51, p. 36610-36623 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Lossy and visually lossless compression of single-look SAR images

    Ponomarenko, N. N., Lukin, V. V., Kozhemiakin, R. A., Egiazarian, K. O. & Chobanu, M. K., 2013, In : Telecommunications and Radio Engineering. 72, 8, p. 711-729 19 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Advanced statistical tools for enhanced quality digital imaging with realistic capture models

    Pizurica, A., Portilla, J., Hirakawa, K. & Egiazarian, K., 2013, In : Eurasip Journal on Advances in Signal Processing. 2013, p. 1-4 4 p., 140.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Draft genome sequence of the hydrogen- and ethanol-producing anaerobic alkalithermophilic bacterium Caloramator celer.

    Ciranna, A., Larjo, A., Kivistö, A., Santala, V., Roos, C. & Karp, M., 2013, In : Genome Announcements. 1, 4, p. 1-2 2 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Critical assessment of automated flow cytometry data analysis techniques

    Aghaeepour, N., Finak, G., Hoos, H., Mosmann, T. R., Brinkman, R., Gottardo, R., Scheuermann, R. H., Dougall, D., Khodabakhshi, A. H., Mah, P., Obermoser, G., Spidlen, J., Taylor, I., Wuensch, S. A., Bramson, J., Eaves, C., Manninen, T., Huttunen, H., Ruusuvuori, P. & Nykter, M., 2013, In : Nature Methods. 10, 3, p. 228-238 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Lossy Depth Image Compression using Greedy Rate-Distortion Slope Optimization

    Schiopu, I. & Tabus, I., 2013, In : IEEE Signal Processing Letters. 20, 11, p. 1066-1069 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE)

    Chowdhury, S., Kandhavelu, M., Yli-Harja, O. & Ribeiro, A. S., 2013, In : BMC Bioinformatics. 14, Suppl 10, p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Passive temporal offset estimation of multichannel recordings of an ad-hoc microphone array

    Pertilä, P., Hämäläinen, M. S. & Mieskolainen, M., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 11, p. 2393-2402 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text

    Heintzelman, N. H., Taylor, R. J., Simonsen, L., Lustig, R., Anderko, D., Haythornthwaite, J. A., Childs, L. C. & Bova, G. S., 2013, In : Journal of the American Medical Informatics Association. 20, 5, p. 898-905 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Constructing Benchmark Databases and Protocols for Medical Image Analysis: Diabetic Retinopathy

    Kauppi, T., Kämäräinen, J-K., Lensu, L., Kalesnykiene, V., Sorri, I., Uusitalo, H. & Kälviäinen, H., 2013, In : Computational and Mathematical Methods in Medicine. 2013, p. 1-15 15 p., 368514.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Digital image reconstruction by using row pre-distortion and third-order moment function estimation

    Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2013, In : Telecommunications and Radio Engineering. 72, 6, p. 485-494 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Karyotypically abnormal human ESCs are sensitive to HDAC inhibitors and show altered regulation of genes linked to cancers and neurological diseases

    Lund, R. J., Reddy Emani, M., Barbaric, I., Kivinen, V., Jones, M., Baker, D., Gokhale, P., Nykter, M., Lahesmaa, R. & Andrews, P. W., 2013, In : Stem Cell Research. 11, 3, p. 1022-1036 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    A Novel Method for Splitting Clumps of Convex Objects Incorporating Image Intensity and Using Rectangular Window-Based Concavity Point-Pair Search

    Farhan, M., Yli-Harja, O. & Niemistö, A., 2013, In : Pattern Recognition. 46, 3, p. 741-751 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Phase retrieval in 4f optical system: background compensation and sparse regularization of object with binary amplitude

    Migukin, A., Agour, M. & Katkovnik, V., 2013, In : Applied Optics. 52, 1, p. A269-A280 12 p., 173116.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    The AX-PET experiment: A demonstrator for an axial Positron Emission Tomograph

    Bolle, E., Casella, C., Chesi, E., De Leo, R., Dissertori, G., Fanti, V., Gillam, J. E., Heller, M., Joram, C., Lustermann, W., Nappi, E., Oliver, J. F., Pauss, F., Rafecas, M., Rudge, A., Ruotsalainen, U., Schinzel, D., Schneider, T., Seguinot, J., Solevi, P., Stapnes, S., Tuna, U. & Weilhammer, P., 2013, In : Nuclear instruments and Methods in Physics Research Section A: Accelerators Spectrometers Detectors and Associated Equipment. 718, p. 126-129 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    On the human ability to discriminate audio ambiances from similar locations of an urban environment

    Korpi, D., Heittola, T., Partala, T., Eronen, A., Mesaros, A. & Virtanen, T., 2013, In : Personal and Ubiquitous Computing. 17, 4

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Modelling non-stationary noise with spectral factorisation in automatic speech recognition

    Hurmalainen, A., Gemmeke, J. F. & Virtanen, T., 2013, In : Computer Speech and Language. 27, 3, p. 763-779 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli

    Häkkinen, A., Muthukrishnan, A., Mora, A., Fonseca, J. M. & Ribeiro, A. S., 2013, In : Bioinformatics. 29, 13, p. 1708-1709 2 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer

    Yang, D., Sun, Y., Hu, L., Zheng, H., Ji, P., Pecot, C. V., Zhao, Y., Reynolds, S., Cheng, H., Rupaimoole, R., Cogdell, D., Nykter, M., Broaddus, R., Rodriguez-Aguayo, C., Lopez-Berestein, G., Liu, J., Shmulevich, I., Sood, A. K., Chen, K. & Zhang, W., 2013, In : Cancer Cell. 23, 2, p. 186-199 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    A Low-Complexity Bit-Plane Entropy Coding and Rate Control for 3-D DWT Based Video Coding

    Belyaev, E., Egiazarian, K. & Gabbouj, M., 2013, In : IEEE Transactions on Multimedia. 15, 8, p. 1786-1799 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Multi-scale Gaussian representation and outline-learning based cell image segmentation

    Farhan, M., Ruusuvuori, P., Emmenlauer, M., Rämö, P., Dehio, C. & Yli-Harja, O., 2013, In : BMC Bioinformatics. 14, SUPPL10, p. 1-14 14 p., S6.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Nonlocal Transform-Domain Filter for Volumetric Data Denoising and Reconstruction

    Maggioni, M., Katkovnik, V., Egiazarian, K. & Foi, A., 2013, In : IEEE Transactions on Image Processing. 22, 1, p. 119-133 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter

    Mäkelä, J., Kandhavelu, M., Oliveira, S. M. D., Chandraseelan, J. G., Lloyd-Price, J., Peltonen, J., Yli-Harja, O. & Ribeiro, A. S., 2013, In : Nucleic Acids Research. 41, 13, p. 6544-6552 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Can we reduce SPECT acquisition time using MAP-EM reconstruction?

    Tuna, U., Sohlberg, A. & Ruotsalainen, U., 2013, In : Journal of Pattern Recognition and Intelligent Systems. 1, 3, p. 54-63 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Context Coding of Depth Map Images Under the Piecewise-Constant Image Model Representation

    Tabus, I., Schiopu, I. & Astola, J., 2013, In : IEEE Transactions on Image Processing. 22, 11, p. 4195-4210 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking

    Ricicova, M., Hamidi, M., Quiring, A., Niemistö, A., Emberly, E. & Hansen, C. L., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 28, p. 11403-11408 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Balance between Noise and Information Flow Maximizes Set Complexity of Network Dynamics

    Mäki-Marttunen, T., Kesseli, J. & Nykter, M., 2013, In : PLoS ONE. 8, 3, p. 1-15 15 p., e56523.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Subjective quality assessment of asymmetric stereoscopic 3D video

    Aflaki, P., Hannuksela, M. M. & Gabbouj, M., 2013, In : Signal, Image and Video Processing. p. 1-15 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Transcriptional Analysis Reveals Gender-Specific Changes in the Aging of the Human Immune System

    Marttila, S., Jylhävä, J., Nevalainen, T., Nykter, M., Jylhä, M., Hervonen, A., Tserel, L., Peterson, P. & Hurme, M., 2013, In : PLoS ONE. 8, 6, p. 1-8 8 p., e66229.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initation of Human T helper 1 and T helper 2 Cell Polarization

    Hawkins, D. R., Larjo, A., Tripathi, S. K., Wagner, U., Luu, Y., Lönnberg, T., Raghav, S. K., Lee, L. K., Lund, R., Ren, B., Lähdesmäki, H. & Lahesmaa, R., 2013, In : Immunity. 38, 6, p. 1271-1284 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    An Efficient Adaptive Binary Arithmetic Coder With Low Memory Requirement

    Belyaev, E., Egiazarian, K., Gabbouj, M. & Turlikov, A., 2013, In : IEEE Journal of Selected Topics in Signal Processing. 7, 6, p. 1053-1061 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Sparse ptychographical coherent diffractive imaging from noisy measurements

    Katkovnik, V. & Astola, J., 2013, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 30, 3, p. 367-379 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Client-Driven Joint Cache Management and Rate Adaptation for Dynamic Adaptive Streaming over HTTP

    Liu, C., Hannuksela, M. M. & Gabbouj, M., 2013, In : International Journal of Digital Multimedia Broadcasting. 16 p., 471683.

    Research output: Contribution to journalArticleScientificpeer-review

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