Tampere University of Technology

TUTCRIS Research Portal

Research group: Laboratory of Biosystem Dynamics-LBD

Research unit: Research Group

  1. 2019
  2. Published

    Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

    Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

    Bahrudeen, M. N. M., Chauhan, V., Palma, C. S. D., Oliveira, S. M. D., Kandavalli, V. K. & Ribeiro, A. S., 22 Oct 2019, In : Journal of Microbiological Methods. 166, 105745.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures

    Oliveira, S. M. D., Goncalves, N. S. M., Kandavalli, V. K., Martins, L., Neeli-Venkata, R., Reyelt, J., Fonseca, J. M., Lloyd-Price, J., Kranz, H. & Ribeiro, A. S., 14 Mar 2019, In : Scientific Reports. 9, 4486.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

    Startceva, S., Kandavalli, V. K., Visa, A. & Ribeiro, A. S., 1 Feb 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 119-128 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Mean and variability in RNA polymerase numbers are correlated to the mean but not the variability in size and composition of Escherichia coli cells

    Almeida, B., Chauhan, V., Kandavalli, V. & Ribeiro, A., 2019, BIOINFORMATICS 2019 - 10th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019. De Maria, E., Gamboa, H. & Fred, A. (eds.). SCITEPRESS, p. 226-233 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. 2018
  8. Published

    Added value of autoregulation and multi-step kinetics of transcription initiation

    Prajapat, M. K. & Ribeiro, A. S., 1 Nov 2018, In : Royal Society Open Science. 5, 11, 181170.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Temperature Dependence of the Transcription Dynamics of Synthetic Genes in Escherichia coli

    Moreira Goncalves, N., 21 Sep 2018, Tampere University of Technology. 78 p. (Tampere University of Technology. Publication; vol. 1567)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  10. Published

    The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures

    Neeli-Venkata, R., Oliveira, S. M. D., Martins, L., Startceva, S., Bahrudeen, M., Fonseca, J. M., Minoia, M. & Ribeiro, A. S., 18 May 2018, In : Physical Biology. 15, 5, 056002.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Estimating effects of extrinsic noise on model genes and circuits with empirically validated kinetics

    Oliveira, S. M. D., Bahrudeen, M. N. M., Startceva, S. & Ribeiro, A. S., 1 Jan 2018, Artificial Life and Evolutionary Computation - 12th Italian Workshop, WIVACE 2017, Revised Selected Papers. Springer Verlag, p. 181-193 13 p. (Communications in Computer and Information Science; vol. 830).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli

    Goncalves, N., Startceva, S., Palma, C., Bahrudeen, M., Oliveira, S. & Ribeiro, A. S., Jan 2018, In : Physical Biology. 15, 2

    Research output: Contribution to journalArticleScientificpeer-review

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