Tampere University of Technology

TUTCRIS Research Portal

Tomasz Rog

  1. 2015
  2. Published

    Topologies, structures and parameter files for lipid simulations in GROMACS with the OPLS-aa force field: DPPC, POPC, DOPC, PEPC, and cholesterol

    Kulig, W., Pasenkiewicz-Gierula, M. & Róg, T., 5 Dec 2015, In : Data in Brief. 5, p. 333-336 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    PIP2 and Talin Join Forces to Activate Integrin

    Orlowski, A., Kukkurainen, S., Pöyry, A., Rissanen, S., Vattulainen, I., Hytönen, V. P. & Róg, T., 24 Sep 2015, In : Journal of Physical Chemistry Part B. 119, 38, p. 12381-12389 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Redox-induced activation of the proton pump in the respiratory complex I

    Sharma, V., Belevich, G., Gamiz-Hernandez, A. P., Róg, T., Vattulainen, I., Verkhovskaya, M. L., Wikström, M., Hummer, G. & Kaila, V. R. I., 15 Sep 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 37, p. 11571-11576 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Building synthetic sterols computationally: unlocking the secrets of evolution?

    Róg, T., Pöyry, S. & Vattulainen, I., 21 Aug 2015, In : Frontiers in Bioengineering and Biotechnology. 3, 00121.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Effect of Phosphatidic Acid on Biomembrane: Experimental and Molecular Dynamics Simulations Study

    Kwolek, U., Kulig, W., Wydro, P., Nowakowska, M., Róg, T. & Kepczynski, M., 6 Aug 2015, In : Journal of Physical Chemistry Part B. 119, 31, p. 10042-10051 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Cholesterol under oxidative stress: How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols

    Kulig, W., Olzyńska, A., Jurkiewicz, P., Kantola, A. M., Komulainen, S., Manna, M., Pourmousa, M., Vazdar, M., Cwiklik, L., Rog, T., Khelashvili, G., Harries, D., Telkki, V. V., Hof, M., Vattulainen, I. & Jungwirth, P., 1 Jul 2015, In : Free Radical Biology and Medicine. 84, p. 30-41 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    How To Minimize Artifacts in Atomistic Simulations of Membrane Proteins, Whose Crystal Structure Is Heavily Engineered: beta(2)-Adrenergic Receptor in the Spotlight

    Manna, M., Kulig, W., Javanainen, M., Tynkkynen, J., Hensen, U., Mueller, D. J., Rog, T. & Vattulainen, I., Jul 2015, In : Journal of Chemical Theory and Computation. 11, 7, p. 3432-3445 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    PEGylated liposomes as carriers of hydrophobic porphyrins

    Dzieciuch, M., Rissanen, S., Szydłowska, N., Bunker, A., Kumorek, M., Jamróz, D., Vattulainen, I., Nowakowska, M., Róg, T. & Kepczynski, M., 4 Jun 2015, In : Journal of Physical Chemistry Part B. 119, 22, p. 6646-6657 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Sec14-nodulin proteins and the patterning of phosphoinositide landmarks for developmental control of membrane morphogenesis

    Ghosh, R., De Campos, M. K. F., Huang, J., Huh, S. K., Orlowski, A., Yang, Y., Tripathi, A., Nile, A., Lee, H-C., Dynowski, M., Schäfer, H., Róg, T., Lete, M. G., Ahyayauch, H., Alonso, A., Vattulainen, I., Igumenova, T. I., Schaaf, G. & Bankaitis, V. A., 1 May 2015, In : Molecular Biology of the Cell. 26, 9, p. 1764-1781 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase

    Sharma, V., Ala-Vannesluoma, P., Vattulainen, I., Wikström, M. & Róg, T., 17 Apr 2015, In : Biochimica et Biophysica Acta: Bioenergetics. 1847, 8, p. 690-697 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

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