Tampere University of Technology

TUTCRIS Research Portal

Tomasz Rog

  1. 2014
  2. Published

    The challenges of understanding glycolipid functions: An open outlook based on molecular simulations

    Manna, M., Rog, T. & Vattulainen, I., 2014, In : Biochimica et Biophysica Acta: Molecular and Cell Biology of Lipids. 1841, 8, p. 1130-1145 16 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  3. 2013
  4. Published

    A computational QM/MM insight on the iron-sulphur cluster in cytocrhome BC1

    Cramariuc, O., Iglesias-Fernandez, J., Kaszuba, K., Rog, T., Rovira, C. & Vattulainen, I., 2013, Physics Days 2013 - Fysiikan päivät 2013, the 47th annual meeting of the Finnish Physical Society, Otaniemi, Espoo, March 14-16, 2013. 1 p. (Physics Days / Fysiikan päivät : Annual Meeting of the Finnish Physical Society).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  5. Published

    Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex

    Pöyry, S., Cramariuc, O., Postila, P. A., Kaszuba, K., Sarewicz, M., Osycza, A., Vattulainen, I. & Rog, T., 2013, In : Biochimica et Biophysica Acta: Bioenergetics. 1827, 6, p. 769-778 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations

    Postila, P. A., Kaszuba, K., Sarewicz, M., Osycza, A., Vattulainen, I. & Rog, T., 2013, In : Biochimica et Biophysica Acta: Bioenergetics. 1827, 6, p. 761-768 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Molecular Dynamics Simulations of Lipid Bilayers: Simple Recipe of How to Do It

    Martinez-Seara, H. & Rog, T., 2013, Biomolecular Simulations: Methods and Protocols. Monticelli, L. & Salonen, E. (eds.). New York: Humana Press, p. 407-429 (Methods in Molecular Biology; vol. 924).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  8. Published

    Molecular lipidomics of exosomes released by PC-3 prostate cancer cells

    Llorente, A., Skotland, T., Sylvänne, T., Kauhanen, D., Rog, T., Orlowski, A., Vattulainen, I., Ekroos, K. & Sandvig, K., 2013, In : Biochimica et Biophysica Acta: Molecular and Cell Biology of Lipids. 1831, 7, p. 1302-1309 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream

    Magarkar, A., Stepniewski, M., Karakas, E., Rog, T., Yliperttula, M., Urtti, A. & Bunker, A., 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2. p. 576-578 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  10. Published

    Parameterization of the prosthetic redox centers of the bacterial cytochrome bc1 complex for atomistic molecular dynamics simulations

    Kaszuba, K., Postila, P. A., Cramariuc, O., Sarewicz, M., Osyczka, A., Vattulainen, I. & Rog, T., 2013, In : Theoretical Chemistry Accounts. 132, 6, p. 1-13 13 p., UNSP 1370.

    Research output: Contribution to journalArticleScientificpeer-review

  11. 2012
  12. Published

    Analysis of cause of failure of new targeting peptide in PEGylated liposome: Molecular modeling as rational design tool for nanomedicine

    Lehtinen, J., Magarkar, A., Stepniewski, M., Hakola, S., Bergman, M., Rog, T., Yliperttula, M., Urtti, A. & Bunker, A., 2012, In : European Journal of Pharmaceutical Sciences. 46, 3, p. 121-130

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Drug-lipid membrane interaction mechanisms revealed through molecular simulations

    Cramariuc, O., Rog, T. & Vattulainen, I., 2012, In : Current Physical Chemistry. 2, 4, p. 379-400

    Research output: Contribution to journalReview ArticleScientificpeer-review

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