Tampere University of Technology

TUTCRIS Research Portal

Tomasz Rog

  1. 2019
  2. Published

    Behavior of the DPH fluorescence probe in membranes perturbed by drugs

    Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Complex Behavior of Phosphatidylcholine-Phosphatidic Acid Bilayers and Monolayers: Effect of Acyl Chain Unsaturation

    Kulig, W., Korolainen, H., Zatorska, M., Kwolek, U., Wydro, P., Kepczynski, M. & Róg, T., 30 Apr 2019, In : Langmuir. 35, 17, p. 5944-5956 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. 2018
  5. Published

    Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico

    Mobarak, E., Håversen, L., Manna, M., Rutberg, M., Levin, M., Perkins, R., Rog, T., Vattulainen, I. & Borén, J., 1 Dec 2018, In : Scientific Reports. 8, 1, 13600.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative

    Mobarak, E., Javanainen, M., Kulig, W., Honigmann, A., Sezgin, E., Aho, N., Eggeling, C., Rog, T. & Vattulainen, I., Nov 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 11, p. 2436-2445

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer

    Owen, M. C., Kulig, W., Poojari, C., Rog, T. & Strodel, B., Sep 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 9, p. 1709-1720

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    The effect of light sensitizer localization on the stability of indocyanine green liposomes

    Lajunen, T., Nurmi, R., Wilbie, D., Ruoslahti, T., Johansson, N. G., Korhonen, O., Rog, T., Bunker, A., Ruponen, M. & Urtti, A., 28 Aug 2018, In : Journal of Controlled Release. 284, p. 213-223 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters

    Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T., 1 Aug 2018, In : Neuroscience. 384, p. 214-223 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    How Cardiolipin Peroxidation Alters the Properties of the Inner Mitochondrial Membrane?

    Vähäheikkilä, M., Peltomaa, T., Rog, T., Vazdar, M., Pöyry, S. & Vattulainen, I., Aug 2018, In : Chemistry and Physics of Lipids. 214, p. 15-23 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study

    Owen, M. C., Kulig, W., Rog, T., Vattulainen, I. & Strodel, B., Jun 2018, In : Journal of Membrane Biology. 251, 3, p. 521-534 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Membrane bound COMT isoform is an interfacial enzyme: General mechanism and new drug design paradigm

    Magarkar, A., Parkkila, P., Viitala, T., Lajunen, T., Mobarak, E., Licari, G., Cramariuc, O., Vauthey, E., Róg, T. & Bunker, A., 11 Apr 2018, In : Chemical Communications. 54, 28, p. 3440-3443 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Bobbing of Oxysterols: Molecular Mechanism for Translocation of Tail-Oxidized Sterols through Biological Membranes

    Kulig, W., Mikkolainen, H., Olżyńska, A., Jurkiewicz, P., Cwiklik, L., Hof, M., Vattulainen, I., Jungwirth, P. & Rog, T., 1 Mar 2018, In : Journal of Physical Chemistry Letters. 9, 5, p. 1118-1123 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. 2017
  15. Published

    DoGlycans-Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS

    Danne, R., Poojari, C., Martinez-Seara, H., Rissanen, S., Lolicato, F., Róg, T. & Vattulainen, I., 23 Oct 2017, In : Journal of Chemical Information and Modeling. 57, 10, p. 2401-2406 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Phase partitioning of GM1 and its bodipy-labeled analog determine their different binding to Cholera Toxin

    Rissanen, S., Grzybek, M., Orlowski, A., Róg, T., Cramariuc, O., Levental, I., Eggeling, C., Sezgin, E. & Vattulainen, I., 9 May 2017, In : Frontiers in Physiology. 8, MAY, 252.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation

    Manna, M., Javanainen, M., Martinez-Seara Monne, H., Gabius, H-J., Rog, T. & Vattulainen, I., 1 May 2017, In : Biochimica et Biophysica Acta: Biomembranes. 1859, 5, p. 870-878 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Effect of piroxicam on lipid membranes: Drug encapsulation and gastric toxicity aspects

    Wilkosz, N., Rissanen, S., Cyza, M., Szybka, R., Nowakowska, M., Bunker, A., Róg, T. & Kepczynski, M., 30 Mar 2017, In : European Journal of Pharmaceutical Sciences. 100, p. 116-125 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition

    Bilkova, E., Pleskot, R., Rissanen, S., Sun, S., Czogalla, A., Cwiklik, L., Róg, T., Vattulainen, I., Cremer, P. S., Jungwirth, P. & Coskun, Ü., 22 Mar 2017, In : Journal of the American Chemical Society. 139, 11, p. 4019-4024 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis

    Euro, L., Haapanen, O., Róg, T., Vattulainen, I., Suomalainen, A. & Sharma, V., 7 Mar 2017, In : Biochemistry. 56, 9, p. 1227-1238 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Glycosylation and Lipids Working in Concert Direct CD2 Ectodomain Orientation and Presentation

    Polley, A., Orłowski, A., Danne, R., Gurtovenko, A. A., Bernardino de La Serna, J., Eggeling, C., Davis, S. J., Róg, T. & Vattulainen, I., 2 Mar 2017, In : Journal of Physical Chemistry Letters. 8, 5, p. 1060-1066 7 p.

    Research output: Contribution to journalLetterScientificpeer-review

  23. Published

    Effects of Membrane PEGylation on Entry and Location of Antifungal Drug Itraconazole and their Pharmacological Implications

    Dzieciuch-Rojek, M., Poojari, C., Bednar, J., Bunker, A., Kozik, B., Nowakowska, M., Vattulainen, I., Wydro, P., Kepczynski, M. & Rog, T., 24 Feb 2017, In : Molecular Pharmaceutics. 14, 4, p. 1057-1070

    Research output: Contribution to journalArticleScientificpeer-review

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