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Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

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Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures. / Acimovic, Jugoslava; Mäki-Marttunen, Tuomo; Linne, Marja-Leena.

Twentieth Annual Computational Neuroscience Meeting: CNS*2011. ed. / Jean-Marc Fellous; Astrid Prinz. Vol. 12 (Suppl 1) Stockholm : BioMed Central, 2011. p. P203 P203 (Annual Computational Neuroscience Meeting CNS; Vol. 12).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Harvard

Acimovic, J, Mäki-Marttunen, T & Linne, M-L 2011, Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures. in J-M Fellous & A Prinz (eds), Twentieth Annual Computational Neuroscience Meeting: CNS*2011. vol. 12 (Suppl 1), P203, Annual Computational Neuroscience Meeting CNS, vol. 12, BioMed Central, Stockholm, pp. P203, Twentieth Annual Computational Neuroscience Meeting: CNS*2011, Stockholm, Sweden, 23/07/11. https://doi.org/10.1186/1471-2202-12-S1-P203

APA

Acimovic, J., Mäki-Marttunen, T., & Linne, M-L. (2011). Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures. In J-M. Fellous, & A. Prinz (Eds.), Twentieth Annual Computational Neuroscience Meeting: CNS*2011 (Vol. 12 (Suppl 1), pp. P203). [P203] (Annual Computational Neuroscience Meeting CNS; Vol. 12). Stockholm: BioMed Central. https://doi.org/10.1186/1471-2202-12-S1-P203

Vancouver

Acimovic J, Mäki-Marttunen T, Linne M-L. Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures. In Fellous J-M, Prinz A, editors, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Vol. 12 (Suppl 1). Stockholm: BioMed Central. 2011. p. P203. P203. (Annual Computational Neuroscience Meeting CNS). https://doi.org/10.1186/1471-2202-12-S1-P203

Author

Acimovic, Jugoslava ; Mäki-Marttunen, Tuomo ; Linne, Marja-Leena. / Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures. Twentieth Annual Computational Neuroscience Meeting: CNS*2011. editor / Jean-Marc Fellous ; Astrid Prinz. Vol. 12 (Suppl 1) Stockholm : BioMed Central, 2011. pp. P203 (Annual Computational Neuroscience Meeting CNS).

Bibtex - Download

@inproceedings{5551b3e34b454f03904dd452d78e72fe,
title = "Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures",
abstract = "Networks of neurons possess distinct structural organization that constraints generated activity patterns, and consequently, the functions of the system. The emergence of the network structure can be understood by studying the rules that govern growth of neurons and their self-organization into neuronal circuits. We analyze these rules using a computational model of growth developed for dissociated neocortical cultures. Compared to the growth in vivo, the cultures represent simplified two dimensional systems that still possess the intrinsic properties of single neurons although they lack the natural extracellular environment present in vivo. This setup provides a possibility to address in depth the selected mechanisms that affect neuronal growth. The collected structural data (through staining and microscopy) and electrophysiological data (using microelectrode arrays) facilitate validation of computational models. Neuronal growth in dissociated cultures has been examined in several studies in order to access the role of activity in network development [6],[7] or to extract the structural changes during growth from the recorded activity and identify the significant time points in network development [4]. In addition, two simulators of neuronal growth were recently published to aid the development of computational models [3],[9]. Their performance, in context of modeling neocortical cultures, is compared in [1].The analyzed model consists of two types on neurons, most commonly observed in the neocortical cultures, the pyramidal cells and the nonpyramidal GABAergic cells, placed in a dish-like space with the density of cells corresponding to the experimental values. The phenomenological model that takes into account growth of every neurite is constructed using the description from the literature [3],[8]. It is compared to the model that defines only the overall shape of each neuritic field. We examine the critical time point in network development, i.e. the emergence of fully connected networks [2],[4], which is dependent on the overall growth speed of neurites. The local structural features are accessed using the frequency of motifs in networks [2],[5]. Local connectivity patterns, captured by the motif counts, depend on the shape of neurites and distribution of synaptic contacts along neurites. The goal of this study is to analyze model dynamics through evaluation of the proposed measures. The dependence on model parameters is examined in details, particularly, whether small variations in parameter values significantly affect both measures of network structure. The obtained conclusions are compared to the experimental findings from the literature [4, 5].",
keywords = "computational model, pyramidal cell, synaptic contact, network development, neuronal circuit",
author = "Jugoslava Acimovic and Tuomo M{\"a}ki-Marttunen and Marja-Leena Linne",
note = "ei ut-numeroa 12.10.2013<br/>Contribution: organisation=sgn,FACT1=1",
year = "2011",
doi = "10.1186/1471-2202-12-S1-P203",
language = "English",
volume = "12 (Suppl 1)",
series = "Annual Computational Neuroscience Meeting CNS",
publisher = "BioMed Central",
pages = "P203",
editor = "Jean-Marc Fellous and Astrid Prinz",
booktitle = "Twentieth Annual Computational Neuroscience Meeting: CNS*2011",
address = "United Kingdom",

}

RIS (suitable for import to EndNote) - Download

TY - GEN

T1 - Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

AU - Acimovic, Jugoslava

AU - Mäki-Marttunen, Tuomo

AU - Linne, Marja-Leena

N1 - ei ut-numeroa 12.10.2013<br/>Contribution: organisation=sgn,FACT1=1

PY - 2011

Y1 - 2011

N2 - Networks of neurons possess distinct structural organization that constraints generated activity patterns, and consequently, the functions of the system. The emergence of the network structure can be understood by studying the rules that govern growth of neurons and their self-organization into neuronal circuits. We analyze these rules using a computational model of growth developed for dissociated neocortical cultures. Compared to the growth in vivo, the cultures represent simplified two dimensional systems that still possess the intrinsic properties of single neurons although they lack the natural extracellular environment present in vivo. This setup provides a possibility to address in depth the selected mechanisms that affect neuronal growth. The collected structural data (through staining and microscopy) and electrophysiological data (using microelectrode arrays) facilitate validation of computational models. Neuronal growth in dissociated cultures has been examined in several studies in order to access the role of activity in network development [6],[7] or to extract the structural changes during growth from the recorded activity and identify the significant time points in network development [4]. In addition, two simulators of neuronal growth were recently published to aid the development of computational models [3],[9]. Their performance, in context of modeling neocortical cultures, is compared in [1].The analyzed model consists of two types on neurons, most commonly observed in the neocortical cultures, the pyramidal cells and the nonpyramidal GABAergic cells, placed in a dish-like space with the density of cells corresponding to the experimental values. The phenomenological model that takes into account growth of every neurite is constructed using the description from the literature [3],[8]. It is compared to the model that defines only the overall shape of each neuritic field. We examine the critical time point in network development, i.e. the emergence of fully connected networks [2],[4], which is dependent on the overall growth speed of neurites. The local structural features are accessed using the frequency of motifs in networks [2],[5]. Local connectivity patterns, captured by the motif counts, depend on the shape of neurites and distribution of synaptic contacts along neurites. The goal of this study is to analyze model dynamics through evaluation of the proposed measures. The dependence on model parameters is examined in details, particularly, whether small variations in parameter values significantly affect both measures of network structure. The obtained conclusions are compared to the experimental findings from the literature [4, 5].

AB - Networks of neurons possess distinct structural organization that constraints generated activity patterns, and consequently, the functions of the system. The emergence of the network structure can be understood by studying the rules that govern growth of neurons and their self-organization into neuronal circuits. We analyze these rules using a computational model of growth developed for dissociated neocortical cultures. Compared to the growth in vivo, the cultures represent simplified two dimensional systems that still possess the intrinsic properties of single neurons although they lack the natural extracellular environment present in vivo. This setup provides a possibility to address in depth the selected mechanisms that affect neuronal growth. The collected structural data (through staining and microscopy) and electrophysiological data (using microelectrode arrays) facilitate validation of computational models. Neuronal growth in dissociated cultures has been examined in several studies in order to access the role of activity in network development [6],[7] or to extract the structural changes during growth from the recorded activity and identify the significant time points in network development [4]. In addition, two simulators of neuronal growth were recently published to aid the development of computational models [3],[9]. Their performance, in context of modeling neocortical cultures, is compared in [1].The analyzed model consists of two types on neurons, most commonly observed in the neocortical cultures, the pyramidal cells and the nonpyramidal GABAergic cells, placed in a dish-like space with the density of cells corresponding to the experimental values. The phenomenological model that takes into account growth of every neurite is constructed using the description from the literature [3],[8]. It is compared to the model that defines only the overall shape of each neuritic field. We examine the critical time point in network development, i.e. the emergence of fully connected networks [2],[4], which is dependent on the overall growth speed of neurites. The local structural features are accessed using the frequency of motifs in networks [2],[5]. Local connectivity patterns, captured by the motif counts, depend on the shape of neurites and distribution of synaptic contacts along neurites. The goal of this study is to analyze model dynamics through evaluation of the proposed measures. The dependence on model parameters is examined in details, particularly, whether small variations in parameter values significantly affect both measures of network structure. The obtained conclusions are compared to the experimental findings from the literature [4, 5].

KW - computational model

KW - pyramidal cell

KW - synaptic contact

KW - network development

KW - neuronal circuit

U2 - 10.1186/1471-2202-12-S1-P203

DO - 10.1186/1471-2202-12-S1-P203

M3 - Conference contribution

VL - 12 (Suppl 1)

T3 - Annual Computational Neuroscience Meeting CNS

SP - P203

BT - Twentieth Annual Computational Neuroscience Meeting: CNS*2011

A2 - Fellous, Jean-Marc

A2 - Prinz, Astrid

PB - BioMed Central

CY - Stockholm

ER -