Neurofunctional plasticity in fraction learning: An fMRI training study
Wortha, S. M., Bloechle, J., Ninaus, M.,
Kiili, K.,
Lindstedt, A., Bahnmueller, J., Moeller, K. & Klein, E.,
1 Dec 2020,
In : Trends in Neuroscience and Education. 21,
15 p., 100141.
Research output: Contribution to journal › Article › Scientific › peer-review
Assessment of PIV performance in validating CFD models from nasal cavity CBCT scans
Ormiskangas, J., Valtonen, O., Kivekäs, I., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Harju, T., Saarenrinne, P. & Rautiainen, M.,
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In : Respiratory Physiology and Neurobiology. 282,
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Research output: Contribution to journal › Article › Scientific › peer-review
Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis
Puhakka, I. J. A. & Peltola, M. J.,
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In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.
Research output: Contribution to journal › Review Article › Scientific › peer-review
Automatic assessment of the myoclonus severity from videos recorded according to standardized Unified Myoclonus Rating Scale protocol and using human pose and body movement analysis
Hyppönen, J., Hakala, A., Annala, K., Zhang, H., Peltola, J., Mervaala, E. & Kälviäinen, R.,
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In : Seizure. 76,
p. 72-78 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Deep audio-visual saliency: Baseline model and data
Tavakoli, H. R., Borji, A., Kannala, J. &
Rahtu, E.,
6 Feb 2020,
Proceedings ETRA 2020 Short Papers - ACM Symposium on Eye Tracking Research and Applications, ETRA 2020. Spencer, S. N. (ed.).
ACM, 3
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A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate
Lenk, K., Satuvuori, E., Lallouette, J., Ladrón-de-Guevara, A., Berry, H. &
Hyttinen, J. A. K.,
22 Jan 2020,
In : Frontiers in Computational Neuroscience. 13,
19 p., 92.
Research output: Contribution to journal › Article › Scientific › peer-review
Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor
Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T.,
2020,
In : ACS Chemical Neuroscience. 11,
13,
p. 1914–1924 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth
Rezaei, A.,
Koulouri, A. &
Pursiainen, S.,
2020,
In : Brain Topography. 33,
2,
p. 161-175 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography
Gracia-Tabuenca, J.,
Seppä, V-P.,
Jauhiainen, M., Paassilta, M.,
Viik, J. & Karjalainen, J.,
2020,
In : Respiratory Physiology and Neurobiology. 271, 103312.
Research output: Contribution to journal › Article › Scientific › peer-review
Unique Features of Network Bursts Emerge From the Complex Interplay of Excitatory and Inhibitory Receptors in Rat Neocortical Networks
Teppola, H., Aćimović, J. &
Linne, M. L.,
6 Sep 2019,
In : FRONTIERS IN CELLULAR NEUROSCIENCE. 13, 377.
Research output: Contribution to journal › Article › Scientific › peer-review
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions
Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I.,
1 May 2019,
In : PLoS Computational Biology. 15,
5, e1007033.
Research output: Contribution to journal › Article › Scientific › peer-review
Viability of Mouse Retinal Explant Cultures Assessed by Preservation of Functionality and Morphology
Alarautalahti, V., Ragauskas, S., Hakkarainen, J. J., Uusitalo-Järvinen, H., Uusitalo, H.,
Hyttinen, J., Kalesnykas, G. &
Nymark, S.,
1 May 2019,
In : Investigative ophthalmology & visual science. 60,
6,
p. 1914-1927 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity
Rimpiläinen, V.,
Koulouri, A., Lucka, F., Kaipio, J. P. & Wolters, C. H.,
1 Mar 2019,
In : NeuroImage. 188,
p. 252-260 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Diffusion tensor imaging and disability progression in multiple sclerosis: A 4-year follow-up study
Kolasa, M., Hakulinen, U., Brander, A., Hagman, S., Dastidar, P., Elovaara, I. & Sumelahti, M-L.,
Jan 2019,
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Research output: Contribution to journal › Article › Scientific › peer-review
Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis
Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A.,
Hyttinen, J. A. K. & Narkilahti, S.,
2019,
In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC,
p. 299-329 31 p. (Advances in Neurobiology; vol. 22).
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
A realistic, accurate and fast source modeling approach for the EEG forward problem
Miinalainen, T.,
Rezaei, A., Us, D., Nüßing, A., Engwer, C., Wolters, C. H. &
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In : NeuroImage. 184,
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p. 56-67 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Astrocyte lineage cells are essential for functional neuronal differentiation and synapse maturation in human iPSC-derived neural networks
Klapper, S. D., Garg, P., Dagar, S.,
Lenk, K., Gottmann, K. & Nieweg, K.,
2019,
In : Glia. 67,
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p. 1893-1909 17 p.Research output: Contribution to journal › Article › Scientific › peer-review
Overview of Sources and Characteristics of Nanoparticles in Urban Traffic-Influenced Areas
Rönkkö, T. & Timonen, H.,
2019,
In : Journal of Alzheimer's Disease. 72,
1,
p. 15-28 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Teaching semantics and skills for human-robot collaboration
Angleraud, A.,
Houbre, Q. &
Pieters, R.,
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In : Paladyn. 10,
1,
p. 318-329 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab
He, Q.,
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2019,
In : Neuroinformatics. 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Cognitive load and metacognitive confidence extraction from pupillary response
Gavas, R. D.,
Tripathy, S. R., Chatterjee, D. & Sinha, A.,
1 Dec 2018,
In : Cognitive Systems Research. 52,
p. 325-334 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Human-robot interactive learning architecture using ontologies and symbol manipulation
Angleraud, A.,
Houbre, Q., Kyrki, V. &
Pieters, R.,
6 Nov 2018,
RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE,
p. 384-389 6 p. (IEEE RO-MAN).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Data-driven study of synchronous population activity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?
Acimovic, J.,
Teppola, H., Mäki-Marttunen, T. M. &
Linne, M-L.,
29 Oct 2018,
In : BMC Neuroscience. 19,
Suppl 2,
p. 68-69 1 p.Research output: Contribution to journal › Meeting Abstract › Scientific › peer-review
Improvement of computational efficiency of a biochemical plasticity model
Lehtimäki, M.,
Paunonen, L. &
Linne, M-L.,
29 Sep 2018,
In : BMC Neuroscience. 19,
Suppl 2,
p. 66-66 P130.
Research output: Contribution to journal › Meeting Abstract › Scientific › peer-review
Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?
Acimovic, J.,
Teppola, H., Mäki-Marttunen, T. M. &
Linne, M-L.,
20 Sep 2018.
Research output: Other conference contribution › Paper, poster or abstract › Scientific
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A.,
10 Sep 2018,
In : PLoS Computational Biology. 14,
9, e1006458.
Research output: Contribution to journal › Article › Scientific › peer-review
Improving efficiency in convolutional neural networks with multilinear filters
Tran, D. T., Iosifidis, A. &
Gabbouj, M.,
1 Sep 2018,
In : Neural Networks. 105,
p. 328-339 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters
Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T.,
1 Aug 2018,
In : Neuroscience. 384,
p. 214-223 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Epileptiform and periodic EEG activities induced by rapid sevoflurane anaesthesia induction
Sonkajärvi, E., Rytky, S., Alahuhta, S., Suominen, K., Kumpulainen, T., Ohtonen, P., Karvonen, E. & Jäntti, V.,
1 Mar 2018,
In : Clinical Neurophysiology. 129,
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p. 638-645 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Nonlinear recurrent neural networks for finite-time solution of general time-varying linear matrix equations
Xiao, L., Liao, B., Li, S. & Chen, K.,
Feb 2018,
In : Neural Networks. 98,
p. 102-113 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
A Primal Neural Network for Online Equality-Constrained Quadratic Programming
Chen, K. & Zhang, Z.,
2018,
In : Cognitive Computation. 10,
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p. 381–388 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
From in silico astrocyte cell models to neuron-astrocyte network models: A review
Oschmann, F., Berry, H., Obermayer, K. &
Lenk, K.,
2018,
In : BRAIN RESEARCH BULLETIN. 136,
p. 76-84Research output: Contribution to journal › Review Article › Scientific › peer-review
Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin
Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I.,
1 Oct 2017,
In : PLoS Computational Biology. 13,
10, e1005831.
Research output: Contribution to journal › Article › Scientific › peer-review
MetrIntMeas a novel metric for measuring the intelligence of a swarm of cooperating agents
Iantovics, L. B.,
Emmert-Streib, F. & Arik, S.,
1 Oct 2017,
In : Cognitive Systems Research. 45,
p. 17-29 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry
Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D.,
16 Aug 2017,
In : ACS Chemical Neuroscience. 8,
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p. 1767-1778 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Measures of spike train synchrony for data with multiple time scales
Satuvuori, E., Mulansky, M., Bozanic, N., Malvestio, I., Zeldenrust, F.,
Lenk, K. & Kreuz, T.,
1 Aug 2017,
In : Journal of Neuroscience Methods. 287,
p. 25-38 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Atomistic fingerprint of hyaluronan–CD44 binding
Vuorio, J., Vattulainen, I. & Martinez-Seara, H.,
1 Jul 2017,
In : PLoS Computational Biology. 13,
7, e1005663.
Research output: Contribution to journal › Article › Scientific › peer-review
Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles
Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T.,
21 Jun 2017,
In : ACS Chemical Neuroscience. 8,
6,
p. 1242-1250 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
CNN-based edge filtering for object proposals
Waris, M. A., Iosifidis, A. &
Gabbouj, M.,
2 Jun 2017,
In : Neurocomputing. 266,
p. 631-640Research output: Contribution to journal › Article › Scientific › peer-review
Network-wide adaptive burst detection depicts neuronal activity with improved accuracy
Välkki, I. A.,
Lenk, K., Mikkonen, J. E., Kapucu, F. E. &
Hyttinen, J. A. K.,
31 May 2017,
In : Frontiers in Computational Neuroscience. 11, 40.
Research output: Contribution to journal › Article › Scientific › peer-review
Functional brain segmentation using inter-subject correlation in fMRI
Kauppi, J-P., Pajula, J., Niemi, J., Hari, R. & Tohka, J.,
1 May 2017,
In : Human Brain Mapping. 38,
5,
p. 2643-2665 23 p.Research output: Contribution to journal › Article › Scientific › peer-review
Cell culture chamber with gas supply for prolonged recording of human neuronal cells on microelectrode array
Kreutzer, J., Ylä-Outinen, L., Mäki, A., Ristola, M., Narkilahti, S. &
Kallio, P.,
15 Mar 2017,
In : Journal of Neuroscience Methods. 280,
p. 27-35 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Advanced boundary electrode modeling for tES and parallel tES/EEG
Pursiainen, S., Agsten, B., Wagner, S. & Wolters, C. H.,
2017,
In : IEEE Transactions on Neural Systems and Rehabilitation Engineering. 26,
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p. 37-44Research output: Contribution to journal › Article › Scientific › peer-review
Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data
Moradi, E., Khundrakpam, B., Lewis, J. D., Evans, A. C. & Tohka, J.,
2017,
In : NeuroImage. 144,
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Spinal cord injury induces widespread chronic changes in cerebral white matter
Ilvesmäki, T., Koskinen, E., Brander, A., Luoto, T., Öhman, J. & Eskola, H.,
2017,
In : Human Brain Mapping. 38,
7,
p. 3637-3647Research output: Contribution to journal › Article › Scientific › peer-review
The relationship between recognition memory for emotion-laden words and white matter microstructure in normal older individuals
Saarela, C., Karrasch, M., Ilvesmäki, T., Parkkola, R., Rinne, J. O. & Laine, M.,
1 Nov 2016,
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p. 1345-1349 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Automatic objective thresholding to detect neuronal action potentials
Tanskanen, J. M. A., Kapucu, F. E., Välkki, I. &
Hyttinen, J. A. K.,
29 Aug 2016,
Proceedings of 2016 24th European Signal Processing Conference (EUSIPCO). p. 662-666 5 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Effect of rhodopsin phosphorylation on dark adaptation in mouse rods
Berry, J., Frederiksen, R., Yao, Y.,
Nymark, S., Chen, J. & Cornwall, C.,
29 Jun 2016,
In : Journal of Neuroscience. 36,
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p. 6973-6987 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia
Tohka, J., Moradi, E.,
Huttunen, H., Alzheimer’s Disease Neuroimaging Initiative & Alzheimer’s Disease Neuroimaging Initiative 2,
2016,
In : Neuroinformatics. 14,
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p. 279-296 18 p.Research output: Contribution to journal › Article › Scientific › peer-review
How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI
Pajula, J. & Tohka, J.,
2016,
In : Computational Intelligence and Neuroscience. 2016, 2094601.
Research output: Contribution to journal › Article › Scientific › peer-review
Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol
Teppola, H., Sarkanen, J. R., Jalonen, T. O. &
Linne, M-L.,
2016,
In : Neurochemical Research. 41,
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p. 731-747Research output: Contribution to journal › Article › Scientific › peer-review
One-Class Classification based on Extreme Learning and Geometric Class Information
Iosifidis, A., Mygdalis, V., Tefas, A. & Pitas, I.,
2016,
In : Neural Processing Letters. p. 1-16 16 p.Research output: Contribution to journal › Article › Scientific › peer-review
Whole-cell morphological properties of neurons constrain the nonrandom features of network connectivity
Acimovic, J., Mäki-Marttunen, T. M. &
Linne, M-L.,
4 Dec 2015,
24th Annual Computational Neuroscience Meeting: CNS*2015. Cymbalyuk, G. & Burkitt, A. (eds.). Prague:
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Assessment of respiratory effort during sleep with noninvasive techniques
Tenhunen, M., Hasan, J. & Himanen, S. L.,
1 Dec 2015,
In : Sleep Medicine Reviews. 24,
p. 103-104 2 p.Research output: Contribution to journal › Article › Scientific
Eustachian tube mucosal inflammation scale validation based on digital video images
Kivekäs, I., Pöyhönen, L., Aarnisalo, A., Rautiainen, M. & Poe, D.,
1 Dec 2015,
In : OTOLOGY AND NEUROTOLOGY. 36,
10,
p. 1748-1752 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Severe cerebral white matter lesions in ischemic stroke patients are associated with less time spent at home and early institutionalization
Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J. & Erkinjuntti, T.,
1 Dec 2015,
In : INTERNATIONAL JOURNAL OF STROKE. 10,
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p. 1192-1196 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Elevated levels of soluble CD26 and CD30 in multiple sclerosis
Basnyat, P., Natarajan, R., Vistbakka, J., Lehtikangas, M., Airas, L., Matinlauri, I., Elovaara, I. & Hagman, S.,
1 Nov 2015,
In : Clinical and Experimental Neuroimmunology. 6,
4,
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Human anterior thalamic nuclei are involved in emotion-attention interaction
Sun, L., Peräkylä, J., Polvivaara, M., Öhman, J., Peltola, J., Lehtimäki, K., Huhtala, H. & Hartikainen, K. M.,
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p. 88-94 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Building new computational models to support health behavior change and maintenance: new opportunities in behavioral research
Spruijt-Metz, D., Hekler, E., Saranummi, N., Intille, S., Korhonen, I., Nilsen, W., Rivera, D. E., Spring, B., Michie, S., Asch, D. A., Sanna, A., Salcedo, V. T., Kukakfa, R. & Pavel, M.,
17 Sep 2015,
In : Translational Behavioral Medicine. 5,
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DropELM: Fast neural network regularization with Dropout and DropConnect
Iosifidis, A., Tefas, A. & Pitas, I.,
25 Aug 2015,
In : Neurocomputing. 162,
p. 57-66 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Distance-based human action recognition using optimized class representations
Iosifidis, A., Tefas, A. & Pitas, I.,
5 Aug 2015,
In : Neurocomputing. 161,
p. 47-55 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Evaluation of the different sleep-disordered breathing patterns of the compressed tracheal sound
Tenhunen, M., Huupponen, E., Hasan, J., Heino, O. & Himanen, S. L.,
1 Aug 2015,
In : Clinical Neurophysiology. 126,
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p. 1557-1563 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
X-ray microtomographic confirmation of the reliability of CBCT in identifying the scalar location of cochlear implant electrode after round window insertion
Zou, J., Hannula, M., Lehto, K., Feng, H., Lähelmä, J., Aula, A. S.,
Hyttinen, J. & Pyykkö, I.,
1 Aug 2015,
In : Hearing Research. 326,
p. 59-65 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Association between soluble L-selectin and anti-JCV antibodies in natalizumab-treated relapsing-remitting MS patients
Basnyat, P., Hagman, S., Kolasa, M., Koivisto, K., Verkkoniemi-Ahola, A., Airas, L. & Elovaara, I.,
1 Jul 2015,
In : Multiple Sclerosis and Related Disorders. 4,
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The effects of neuron morphology on graph theoretic measures of network connectivity: The analysis of a two-level statistical model
Acimovic, J., Mäki-Marttunen, T. &
Linne, M-L.,
10 Jun 2015,
In : Frontiers in Neuroanatomy. 9,
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Experiments of the sonification of the sleep electroencephalogram
Franco, P. &
Värri, A.,
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In : Finnish Journal of eHealth and eWelfare. 7,
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p. 65-74 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway
Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S.,
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Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge
Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M., Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L., Nielsen, M., Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S.,
1 May 2015,
In : NeuroImage. 111,
p. 562-579 18 p.Research output: Contribution to journal › Article › Scientific › peer-review
Analysis of apoptosis-related genes in patients with clinically isolated syndrome and their association with conversion to multiple sclerosis
Hagman, S., Kolasa, M., Basnyat, P., Helminen, M., Kähönen, M., Dastidar, P., Lehtimäki, T. & Elovaara, I.,
15 Mar 2015,
In : JOURNAL OF NEUROIMMUNOLOGY. 280,
p. 43-48 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording
Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K.,
2015,
In : NeuroImage: Clinical. 7,
p. 823-829 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells
Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H.,
2015,
In : Investigative Ophthalmology and Visual Science. 56,
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Extreme learning machine based supervised subspace learning
Iosifidis, A.,
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In : Neurocomputing. 167,
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Patient-specific induced pluripotent stem cell—derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency
Polinati, P. P., Ilmarinen, T., Trokovic, R., Hyotylainen, T., Otonkoski, T., Suomalainen, A., Skottman, H. & Tynitiina, T.,
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Regularized extreme learning machine for multi-view semi-supervised action recognition
Iosifidis, A., Tefas, A. & Pitas, I.,
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Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy
Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J.,
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Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans
Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J.,
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Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation
Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S.,
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In : OTOLOGY AND NEUROTOLOGY. 35,
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Haptic feedback to gaze events
Kangas, J., Rantala, J., Majaranta, P., Isokoski, P. & Raisamo, R.,
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Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery,
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Look and lean: Accurate head-assisted eye pointing
Špakov, O., Isokoski, P. & Majaranta, P.,
2014,
Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery,
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Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer
Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J.,
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In : eLIFE. 3Research output: Contribution to journal › Article › Scientific › peer-review
Real-time hidden gaze point correction
Špakov, O. & Gizatdinova, Y.,
2014,
Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery,
p. 291-294 4 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
TraQuMe: A tool for measuring the gaze tracking quality
Akkil, D., Isokoski, P., Kangas, J., Rantala, J. & Raisamo, R.,
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Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery,
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Learning sparse representations for view-independent human action recognition based on fuzzy distances
Iosifidis, A., Tefas, A. & Pitas, I.,
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p. 344-353 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Post-stroke depression and depression-executive dysfunction syndrome are associated with recurrence of ischaemic stroke
Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J., Vataja, R. & Erkinjuntti, T.,
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Effects of exogenous alpha-synuclein on stimulated dopamine overflow in dorsal striatum
Pelkonen, A., Kallunki, P. & Yavich, L.,
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In : Neuroscience Letters. 554,
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Transfer learning using a nonparametric sparse topic model
Faisal, A., Gillberg, J., Leen, G. & Peltonen, J.,
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On the effect of network structure and synaptic mechanisms on sustained bursting activity
Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. &
Linne, M-L.,
8 Jul 2013,
Twenty Second Annual Computational Neuroscience Meeting: CNS*2013. Cymbalyuk, G. & Prinz, A. (eds.). Paris, France:
BioMed Central,
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Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI
Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R.,
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Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells
Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R.,
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In : Journal of Neuroscience Methods. 215,
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Disconnection between periodic leg movements and cortical arousals in spinal cord injury
Salminen, A. V., Manconi, M., Rimpilä, V., Luoto, T. M., Koskinen, E., Ferri, R., Öhman, J. & Polo, O.,
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In : JOURNAL OF CLINICAL SLEEP MEDICINE. 9,
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Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors
Emmert-Streib, F.,
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In : PeerJ. 2013,
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Research output: Contribution to journal › Article › Scientific › peer-review
Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy
Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J.,
Dec 2012,
In : EPILEPSIA. 53,
12Research output: Contribution to journal › Article › Scientific › peer-review
In silico study on structure and dynamics in bursting neuronal networks
Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. &
Linne, M-L.,
13 Oct 2012,
Neuroscience 2012; 42nd Annual Meeting, New Orleans, USA, October 14-18, 2012. Society for Neuroscience (SfN),
1 p. 300.26/DDD70
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Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke
Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T.,
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In : CEREBROVASCULAR DISEASES. 34,
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Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients
Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I.,
15 Sep 2012,
In : JOURNAL OF NEUROIMMUNOLOGY. 250,
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Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats
Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L.,
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In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101,
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Significance of graph theoretic measures in predicting neuronal network activity
Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. &
Linne, M-L.,
23 Feb 2012,
Proceedings of The 9th annual Computational and Systems Neuroscience meeting (COSYNE 2012). Salt Lake City,
p. 55-55 1 p. I-15
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Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition
Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E.,
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Cortical spreading depression in alpha-synuclein knockout mice
Pelkonen, A. & Yavich, L.,
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In : SYNAPSE. 66,
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p. 81-84 4 p.Research output: Contribution to journal › Article › Scientific › peer-review
Comparison of eye movement filters used in HCI
Špakov, O.,
2012,
Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 281-284 4 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Gaze gestures or dwell-based interaction?
Hyrskykari, A., Istance, H. & Vickers, S.,
2012,
Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 229-232 4 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Simple gaze gestures and the closure of the eyes as an interaction technique
Heikkilä, H. & Räihä, K. J.,
2012,
Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 147-154 8 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
The effect of different text presentation formats on eye movement metrics in reading
Sharmin, S., Špakov, O. & Räihä, K. J.,
2012,
In : JOURNAL OF EYE MOVEMENT RESEARCH. 5,
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Research output: Contribution to journal › Article › Scientific › peer-review
The validity of using non-representative users in gaze communication research
Istance, H., Vickers, S. & Hyrskykari, A.,
2012,
Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 233-236 4 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
COX-2 regulates the proliferation of glioma stem like cells
Sharma, V., Dixit, D., Ghosh, S. & Sen, E.,
Oct 2011,
In : NEUROCHEMISTRY INTERNATIONAL. 59,
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Effects of local structure of neuronal networks on spiking activity in silico
Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. &
Linne, M-L.,
18 Jul 2011,
Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm:
BioMed Central,
Vol. 12 (Suppl 1).
p. P202 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Emergence of global and local structural features during development of neuronal networks
Acimovic, J.,
6 Jun 2011,
Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere:
TICSP, (TICSP Series ; vol. 57).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study
Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I.,
May 2011,
In : JOURNAL OF NEUROIMMUNOLOGY. 234,
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p. 141-147 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling
Heikkinen, H., Vinberg, F.,
Nymark, S. & Koskelainen, A.,
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Pathway analysis of expression data: Deciphering functional building blocks of complex diseases
Emmert-Streib, F. & Glazko, G. V.,
May 2011,
In : PLoS Computational Biology. 7,
5, e1002053.
Research output: Contribution to journal › Article › Scientific › peer-review
Effects of structure on spontaneous activity in simulated neuronal networks
Mäki-Marttunen, T., Acimovic, J., Ruohonen, K. &
Linne, M-L.,
11 Apr 2011,
Proceedings of Mathematical Neuroscience (ICMS 2011), April 11-13, 2011, Edinburgh, Scotland.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies
Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J.,
Mar 2011,
In : European Journal of Neurology. 18,
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p. 402-409 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Fault tolerant machine learning for nanoscale cognitive radio
Pajarinen, J., Peltonen, J. & Uusitalo, M. A.,
Feb 2011,
In : Neurocomputing. 74,
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Neuromuscular pathology in mice lacking alpha-synuclein
Pelkonen, A. & Yavich, L.,
10 Jan 2011,
In : Neuroscience Letters. 487,
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p. 350-353 4 p.Research output: Contribution to journal › Article › Scientific › peer-review
Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures
Acimovic, J., Mäki-Marttunen, T. &
Linne, M-L.,
2011,
Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm:
BioMed Central,
Vol. 12 (Suppl 1).
p. P203 1 p. P203. (Annual Computational Neuroscience Meeting CNS; vol. 12).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Computational modeling of growth in cortial cultures using the NETMORPH simulation tool
Acimovic, J., Mäki-Marttunen, T. &
Linne, M-L.,
2010,
Neuroscience 2010, 40th Annual Meeting, San Diego, USA, 13-17 November 2010. p. 2 p Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Computational tools for assessing the properties of 2D neural cell cultures
Acimovic, J.,
Teppola, H., Selinummi, J. J. &
Linne, M-L.,
13 Jul 2009,
Eighteenth Annual Computational Neuroscience Meeting: CNS*2009. Johnson, D. (ed.). Berlin:
BioMed Central,
Vol. 10 (Suppl 1).
p. P170 1 p. P170
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Neural networks, cell cultures and some older work on data analysis.
Acimovic, J.,
15 Jun 2009.
Research output: Other conference contribution › Paper, poster or abstract › Scientific
Influence of the neural network topology on the learning dynamics
Emmert-Streib, F.,
May 2006,
In : Neurocomputing. 69,
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A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons
Otterpohl, J. R.,
Emmert-Streib, F. & Pawelzik, K.,
Jun 2001,
In : Neurocomputing. 38-40,
p. 1495-1501 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)
Otterpohl, J. R., Haynes, J. D.,
Emmert-Streib, F., Vetter, G. & Pawelzik, K.,
2001,
In : Journal of Physiology: Paris. 95,
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p. 497 1 p.Research output: Contribution to journal › Article › Scientific › peer-review
Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons
Otterpohl, J. R., Haynes, J. D.,
Emmert-Streib, F., Vetter, G. & Pawelzik, K.,
2000,
In : Journal of Physiology: Paris. 94,
5-6,
p. 555-567 13 p.Research output: Contribution to journal › Article › Scientific › peer-review