A library of π-expanded α,β-unsaturated ketones was designed and synthesized. They were prepared by a combination of Wittig reaction, Sonogashira reaction, and aldol condensation. It was further demonstrated that the double aldol condensation can be performed effectively for highly polarized styrene- and diphenylacetylene-derived aldehydes. The strategic placement of two dialkylamino groups at the periphery of D-π-A-π-D molecules resulted in dyes with excellent solubility. These ketones absorb light in the region 400-550nm. Many of them display strong solvatochromism so that the emission ranges from 530-580nm in toluene to the near-IR region in benzonitrile. Ketones based on cyclobutanone as central moieties display very high fluorescence quantum yields in nonpolar solvents, which decrease drastically in polar media. Photophysical studies of these new functional dyes revealed that they possess an enhanced two-photon absorption cross section when compared with simpler ketone derivatives. Due to strong polarization of the resulting dyes, values of two-photon absorption cross sections on the level of 200-300GM at 800nm were achieved, and thanks to that as well as the presence of the keto group, these new two-photon initiators display excellent performance so that the operating region is 5-75mW in some cases.
Research output: Contribution to journal › Article › Scientific › peer-review
Zinc metalloproteins are one of the most abundant and structurally diverse proteins in nature. In these proteins, the Zn(II) ion possesses a multifunctional role as it stabilizes the fold of small zinc fingers, catalyzes essential reactions in enzymes of all six classes, or assists in the formation of biological oligomers. Previously, a number of database surveys have been conducted on zinc proteins to gain broader insights into their rich coordination chemistry. However, many of these surveys suffer from severe flaws and misinterpretations or are otherwise limited. To provide a more comprehensive, up-to-date picture on zinc coordination environments in proteins, zinc containing protein structures deposited in the Protein Data Bank (PDB) were analyzed in detail. A statistical analysis in terms of zinc coordinating amino acids, metal-to-ligand bond lengths, coordination number, and structural classification was performed, revealing coordination spheres from classical tetrahedral cysteine/histidine binding sites to more complex binuclear sites with carboxylated lysine residues. According to the results, coordination spheres of hundreds of crystal structures in the PDB could be misinterpreted due to symmetry-related molecules or missing electron densities for ligands. The analysis also revealed increasing average metal-to-ligand bond length as a function of crystallographic resolution, which should be taken into account when interrogating metal ion binding sites. Moreover, one-third of the zinc ions present in crystal structures are artifacts, merely aiding crystal formation and packing with no biological significance. Our analysis provides solid evidence that a minimal stable zinc coordination sphere is made up by four ligands and adopts a tetrahedral coordination geometry.
Research output: Contribution to journal › Article › Scientific › peer-review
Nanoparticle (particles with diameter ≤100 nm) exposure is recognized as a potentially harmful size fraction for pulmonary particle exposure. During nanoparticle synthesis, the number concentrations in the process room may exceed 10 × 10<sup>6</sup> cm<sup>−3</sup>. During such conditions, it is essential that the occupants in the room wear highly reliable high-performance respirators to prevent inhalation exposure. Here we have studied the in-use program protection factor (PPF) of loose-fitting powered air purifying respirators, while workers were coating components with TiO<inf>2</inf> or Cu<inf>x</inf>O<inf>y</inf> nanoparticles under a hood using a liquid flame spray process. The PPF was measured using condensation particle counters, an electrical low pressure impactor, and diffusion chargers. The room particle concentrations varied from 4 × 10<sup>6</sup> to 40 × 10<sup>6</sup> cm<sup>−3</sup>, and the count median aerodynamic diameter ranged from 32 to 180 nm. Concentrations inside the respirator varied from 0.7 to 7.2 cm<sup>−3</sup>. However, on average, tidal breathing was assumed to increase the respirator concentration by 2.3 cm<sup>−3</sup>. The derived PPF exceeded 1.1 × 10<sup>6</sup>, which is more than 40 × 10<sup>3</sup> times the respirator assigned protection factor. We were unable to measure clear differences in the PPF of respirators with old and new filters, among two male and one female user, or assess most penetrating particle size. This study shows that the loose-fitting powered air purifying respirator provides very efficient protection against nanoparticle inhalation exposure if used properly.
EXT="Koivisto, Antti J."
Research output: Contribution to journal › Article › Scientific › peer-review
We have studied the etching of GaInNAs, GaInNAsSb, and GaNAsSb alloys by NH4OH, H2SO4, and H3PO4 based solutions. NH4OH based solutions resulted in smooth surface, while other solutions created rougher and granular surfaces. The etch rates were found to increase with the Sb content. For GaInNAs, x-ray photoelectron spectroscopy revealed the enrichment of In on the etched surfaces, indicating In or In oxides having a smaller removal rate compared to Ga or Ga oxides. The enrichment of In was associated with smoother surfaces after etching and an enhanced photoluminescence caused by lower surface recombination due to reduced surface state density.
EXT="Mäkelä, Jaakko"
EXT="Laukkanen, Pekka"
Research output: Contribution to journal › Article › Scientific › peer-review
The topics here deal with some current progress in electromagnetic wave propagation in a family of substances known as metamaterials. To begin with, it is discussed how a pulse can develop a leading edge that steepens and it is emphasised that such self-steepening is an important inclusion within a metamaterial environment together with Raman scattering and third-order dispersion whenever very short pulses are being investigated. It is emphasised that the self-steepening parameter is highly metamaterial-driven compared to Raman scattering, which is associated with a coefficient of the same form whether a normal positive phase, or a metamaterial waveguide is the vehicle for any soliton propagation. It is also shown that the influence of magnetooptics provides a beautiful and important control mechanism for metamaterial devices and that, in the future, this feature will have a significant impact upon the design of data control systems for optical computing. A major objective is fulfiled by the investigations of the fascinating properties of hyperbolic media that exhibit asymmetry of supported modes due to the tilt of optical axes. This is a topic that really merits elaboration because structural and optical asymmetry in optical components that end up manipulating electromagnetic waves is now the foundation of how to operate some of the most successful devices in photonics and electronics. It is pointed out, in this context, that graphene is one of the most famous plasmonic media with very low losses. It is a two-dimensional material that makes the implementation of an effective-medium approximation more feasible. Nonlinear non-stationary diffraction in active planar anisotropic hyperbolic metamaterials is discussed in detail and two approaches are compared. One of them is based on the averaging over a unit cell, while the other one does not include sort of averaging. The formation and propagation of optical spatial solitons in hyperbolic metamaterials is also considered with a model of the response of hyperbolic metamaterials in terms of the homogenisation ('effective medium') approach. The model has a macroscopic dielectric tensor encompassing at least one negative eigenvalue. It is shown that light propagating in the presence of hyperbolic dispersion undergoes negative (anomalous) diffraction. The theory is ten broadened out to include the influence of the orientation of the optical axis with respect to the propagation wave vector. Optical rogue waves are discussed in terms of how they are influenced, but not suppressed, by a metamaterial background. It is strongly discussed that metamaterials and optical rogue waves have both been making headlines in recent years and that they are, separately, large areas of research to study. A brief background of the inevitable linkage of them is considered and important new possibilities are discussed. After this background is revealed some new rogue wave configurations combining the two areas are presented alongside a discussion of the way forward for the future.
Research output: Contribution to journal › Review Article › Scientific › peer-review
This work describes a straightforward method to prepare patterned photonic coatings which alter their colour when exposed to water. Various kinds of dual-coloured patterns were made, which become visible or fade away when placed in water. These effects are reversible and can be repeated many times.
Research output: Contribution to journal › Article › Scientific › peer-review
A new biomimetic stimuli-responsive adaptive elastomeric material, whose mechanical properties are altered by a water treatment is reported in this paper. This material is a calcium sulphate (CaSO4) filled composite with an epoxidized natural rubber (ENR) matrix. By exploiting various phase transformation processes that arise when CaSO4 is hydrated, several different crystal structures of CaSO4·xH2O can be developed in the cross-linked ENR matrix. Significant improvements in the mechanical and thermal properties are then observed in the water-treated composites. When compared with the untreated sample, there is approximately 100% increase in the dynamic modulus. The thermal stability of the composites is also improved by increasing the maximum degradation rate temperature by about 20 °C. This change in behavior results from an in situ development of hydrated crystal structures of the nanosized CaSO4 particles in the ENR matrix, which has been verified using Raman spectroscopy, transmission electron microscopy, atomic force microscopy, and X-ray scattering. This work provides a promising and relatively simple pathway for the development of next generation of mechanically adaptive elastomeric materials by an eco-friendly route, which may eventually also be developed into an innovative biodegradable and biocompatible smart polymeric material.
Research output: Contribution to journal › Article › Scientific › peer-review
The removal of volatile fatty acids was examined through adsorption on anion exchange resins in batch systems. During the initial screening step, granular activated carbon and 11 anion exchange resins were tested and the resins Amberlite IRA-67 and Dowex optipore L-493 were chosen for further investigation. The adsorption kinetics and diffusion mechanism and adsorption isotherms of the two resins for VFA were evaluated. Based on the selective adsorption capacity of the resins, a sequential batch process was tested to achieve separation of acetic acid from the VFA mixture and selective recoveries > 85% acetic acid and ~ 75% propionic acid was achieved.
Research output: Contribution to journal › Article › Scientific › peer-review
The Vilsmeier formylation has been introduced for the solid-phase functionalization of five different 2-carboxyindoles. The aldehyde functionality has been utilized in the preparation of O-benzylhydroxyureas.
Research output: Contribution to journal › Article › Scientific › peer-review
A bio-ink for covalent deposition of thermostable, high affinity biotin-binding chimeric avidin onto sol-gel substrates was developed. The bio-ink was prepared from heterobifunctional crosslinker 6-maleimidohexanoic acid N-hydroxysuccinimide which was first reacted either with 3-aminopropyltriethoxysilane or 3-aminopropyldimethylethoxysilane to form silane linkers 6-maleimide- N-(3-(triethoxysilyl)propyl)hexanamide or -(ethoxydimethylsilyl)propyl)-hexanamide. C-terminal cysteine genetically engineered to chimeric avidin was reacted with the maleimide group of silane linker in methanol/PBS solution to form a suspension, which was printed on sol-gel modified PMMA film. Different concentrations of chimeric avidin and ratios between silane linkers were tested to find the best properties for the bio-ink to enable gravure or inkjet printing. Bio-ink prepared from 3-aminopropyltriethoxysilane was found to provide the highest amount of active immobilized chimeric avidin. The developed bio-ink was shown to be valuable for automated fabrication of avidin-functionalized polymer films.
Research output: Contribution to journal › Article › Scientific › peer-review
Dielectric elastomer actuators (DEAs) have been studied widely in recent years for artificial muscle applications, but their implementation into production is limited due to high operating voltages required. The actuation behavior of dielectric elastomer under an applied electric field is predicted by Maxwell's pressure and thickness strain equations. According to these equations, the best electromechanical response is achieved when the relative permittivity is high and elastic modulus is low. The potential source for additives increasing the relative permittivity of rubbers can be vegetable powders that have much higher dielectric constant than common elastomers. In the present research, the dielectric and actuation properties of polyacrylate rubber (ACM) were studied after the addition of different vegetable-based fillers such as potato starch, corn starch, garlic, and paprika. The results were compared to ACM filled with barium titanate. The compounds containing vegetable fillers showed higher relative dielectric permittivity at 1 Hz frequency than the compounds containing barium titanate due to higher interfacial polarization. The actuation studies showed that lower electric fields are required to generate certain actuation forces when the starches and garlic are used in the rubber instead of barium titanate. Therefore, the vegetable-based fillers can be used to improve actuation performance of DEAs.
INT=mol,"Poikelispää, Minna"
Research output: Contribution to journal › Article › Scientific › peer-review
The interplay between electrostatic and van der Waals (vdW) interactions in porphyrin-C60 dyads is still under debate despite its importance in influencing the structural characteristics of such complexes considered for various applications in molecular photovoltaics. In this article, we sample the conformational space of a porphyrin-C60 dyad using Car-Parrinello molecular dynamics simulations with and without empirical vdW corrections. Long-range vdW interactions, which are poorly described by the commonly used density functional theory functionals, prove to be essential for a proper dynamics of the dyad moieties. Inclusion of vdW corrections brings porphyrin and C60 close together in an orientation that is in agreement with experimental observations. The structural differences arising from the vdW corrections are shown to be significant for several properties and potentially less important for others. Additionally, our Mulliken population analysis reveals that contrary to the common belief, porphyrin is not the primary electron donating moiety for C60. In the considered dyad, fullerene's affinity for electrons is primarily satisfied by charge transfer from the amide group of the linker. However, we show that in the absence of another suitable bound donor, C60 can withdraw electrons from porphyrin if it is sufficiently close.
ORG=fys,0.5
ORG=keb,0.5
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Review Article › Scientific › peer-review
Using a combination of experimental techniques (circular dichroism, differential scanning calorimetry, and NMR) and molecular dynamics simulations, we performed an extensive study of denaturation of the Trp-cage miniprotein by urea and guanidinium. The experiments, despite their different sensitivities to various aspects of the denaturation process, consistently point to simple, two-state unfolding process. Microsecond molecular dynamics simulations with a femtosecond time resolution allow us to unravel the detailed molecular mechanism of Trp-cage unfolding. The process starts with a destabilizing proline shift in the hydrophobic core of the miniprotein, followed by a gradual destruction of the hydrophobic loop and the α-helix. Despite differences in interactions of urea vs guanidinium with various peptide moieties, the overall destabilizing action of these two denaturants on Trp-cage is very similar.
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
The direct doping method was applied to fabricate upconverter fluorophosphate glasses in the system (90NaPO3-(10-x)Na2O-xNaF) (mol%) by adding NaYF4:Er3+,Yb3+ nanocrystals. An increase in the network connectivity, a red shift of the optical band gap and a decrease in the thermal properties occur when Na2O is progressively replaced by NaF. To ensure the survival and the dispersion of the nanocrystals in the glasses with x = 0 and 10, three doping temperatures (Tdoping) (525, 550 and 575 °C) at which the nanocrystals were added in the glass melt after melting and 2 dwell times (3 and 5 minutes) before quenching the glasses were tested. Using 5 wt% of the NaYF4:Er3+,Yb3+ nanocrystals, green emission from the NaYF4:Er3+,Yb3+ nanocrystals-containing glasses was observed using a 980 nm pumping, the intensity of which depends on the glass composition and on the direct doping parameters (Tdoping and dwell time). The strongest upconversion was obtained from the glass with x = 10 prepared using a Tdoping of 550 °C and a 3 min dwell time. Finally, we showed that the upconversion, the emission at 1.5 μm and of the transmittance spectra of the nanocrystals-containing glasses could be measured to verify if decomposition of the nanocrystals occurred in glass melts during the preparation of the glasses.
Research output: Contribution to journal › Article › Scientific › peer-review
The effects of unintentional boron contamination on optical properties of GaInP/AlGaInP quantum well structures grown by molecular beam epitaxy (MBE) are reported. Photoluminescence and secondary-ion mass spectrometry (SIMS) measurements revealed that the optical activity of boron-contaminated quantum wells is heavily affected by the amount of boron in GaInP/AlGaInP heterostructures. The boron concentration was found to increase when cracking temperature of the phosphorus source was increased. Boron incorporation was enhanced also when aluminum was present in the material.
Research output: Contribution to journal › Article › Scientific › peer-review
We report the unusual mechanical percolation behavior of expanded clay nanoparticles in a natural rubber (NR) matrix. This phenomenon is discussed in terms of fractal dimensions of the nanoparticle cluster. Highly exfoliated structures of nanoparticles in NR are obtained by a process we call the 'propping-open approach'. The impact of filler dispersion and rubber-filler interactions on the viscoelastic behavior of NR-clay nanocomposites is systematically investigated. We observe non-linear viscoelastic behavior (Payne effect) at very low nanoparticle concentrations which we attribute to the formation of a network-like structure of the exfoliated clay particles. We rely on the Kraus and Maier-Göritz models to interpret such nonlinear viscoelastic behavior. We find that the chain mobility of the NR is greatly reduced based on the viscoelastic master curves. The value of the mechanical percolation threshold (φp) and the fractal nature of nanoparticle clusters are determined through an analysis of the experimental data based on a theory put forward by Huber and Vilgis. The nature of rubber-filler interactions is further understood from swelling experiments utilizing the Kraus and Cunneen-Russell equations.
Research output: Contribution to journal › Article › Scientific › peer-review
Selenium is used extensively in many industries, and it is necessary for human nutrition. On the other hand, it is also toxic at slightly elevated concentrations. With the advent of industrialisation, selenium concentrations in the environment due to anthropogenic activities have increased. Treatment of selenium-laden wastewaters and bioremediation are of increasing importance for counteracting contamination. Developing an effective treatment process requires the identification of all the selenium chemical species and their concentrations in engineered settings. This chapter collates the available techniques for identifying and quantifying various selenium species in gas, liquid, and solid phases, including X-ray absorption spectroscopy, electron microscopy, and liquid/gas chromatography. This chapter also throws light on isotopic fractionation and sequential extraction methods used to study the behaviour of selenium. Prior to the discussion of analytical methods, this chapter discusses selenium mineralogy and biochemistry. Finally, the chapter concludes by discussing potential future analytical techniques that will further improve our understanding of selenium biogeochemistry in engineered bioprocesses.
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
An extraction method was developed for the determination of toxic elements in contaminated soil samples by inductively coupled plasma atomic emission spectrometry (ICP-AES). The determination of arsenic, cadmium, lead, and silver in ultrasound-assisted extracts of SRM 2710 and SRM 2711 by ICP-AES was carried out with high accuracy and precision (RSD<3.7%). The certified concentrations of the SRMs were obtained for arsenic, cadmium, lead, and silver by using an ultrasound-assisted extraction method with a digestion solution of (1+1)-diluted aqua regia. The determination of copper in SRMs by the ultrasound-assisted extraction method and analysis by ICP-AES failed to obtain the certified concentrations at the 95% level of confidence using (±2 s) as confidence limits of the mean. However, the same results were observed with the use of the microwave digestion method and reflux, which is the ISO 11466 standard method. The analysis of the SRMs showed that the ultrasound-assisted extraction method is highly comparable with the other methods used for such purposes. The major advantages of the ultrasound-assisted extraction method compared to the microwave and reflux methods are the high treatment rate (50 samples simultaneously in nine minutes) and low reagent usage, the main benefit of which are the low chloride and nitrate concentrations in the extracts.
Research output: Contribution to journal › Article › Scientific › peer-review
The ultrafast photochemistry of the [Cr(NCS)6]3- complex upon excitation to the 4T2 ligand-field (LF) state was studied in dimethyl sulfoxide (DMSO) and N,N-dimethylformamide (DMF) in a wide temporal range (100 fs to 9 ms) by a combination of femtosecond and nanosecond transient absorption spectroscopy techniques and supported by quantum-chemical DFT/TD-DFT calculations. The initially excited 4T2 state undergoes intersystem crossing to the vibrationally hot 2E state with time constants of 1.1 ± 0.2 and 1.8 ± 0.1 ps in DMSO and DMF, respectively. Vibrational relaxation occurs in the same time scale and takes 1-5 ps. A major part of the [Cr(NCS)6]3- complex in the 2E state undergoes intersystem crossing to the ground state with time constants of 65 ± 5 and 85 ± 5 ns in DMSO and DMF, respectively. A minor part of electronically excited [Cr(NCS)6]3- undergoes irreversible photochemical decomposition. In DMSO, the photolysis of the [Cr(NCS)6]3- complex results in single or double isothiocyanate ion release followed by the coordination of the solvent molecules with a time constant of 1 ± 0.2 ms.
Research output: Contribution to journal › Article › Scientific › peer-review
Adsorption of metal cations onto a cellular membrane changes its properties, such as interactions with charged moieties or the propensity for membrane fusion. It is, however, unclear whether cells can regulate ion adsorption and the related functions via locally adjusting their membrane composition. We employed fluorescence techniques and computer simulations to determine how the presence of cholesterol - a key molecule inducing membrane heterogeneity - affects the adsorption of sodium and calcium onto zwitterionic phosphatidylcholine bilayers. We found that the transient adsorption of sodium is dependent on the number of phosphatidylcholine head groups, while the strong surface binding of calcium is determined by the available surface area of the membrane. Cholesterol thus does not affect sodium adsorption and only plays an indirect role in modulating the adsorption of calcium by increasing the total surface area of the membrane. These observations also indicate how lateral lipid heterogeneity can regulate various ion-induced processes including adsorption of peripheral proteins, nanoparticles, and other molecules onto membranes.
Research output: Contribution to journal › Article › Scientific › peer-review
The directed self-assembly (DSA) of block copolymer (BCP) thin films could enable a scalable, bottom-up alternative to photolithography for the generation of substrate features. The PS-b-PDMS (polystyrene-b-polydimethylsiloxane) system is attractive as it can be extended toward very small feature sizes as well as having two blocks that can be readily differentiated during pattern transfer. However, PS-b-PDMS offers a considerable challenge because of the chemical differences in the blocks which lead to poor surface-wetting, poor pattern orientation control, and structural instabilities. These challenges can be mitigated by careful definition of the interface chemistry between the substrate and the BCP. Here, we report controlled pattern formation in cylinder forming PS-b-PDMS system by use of a carefully controlled PDMS brush. Control of the brush was achieved using exposure to UV-O3 for varying time. It is demonstrated that this treatment enhances surface wetting and coverage of the BCP. The modified brushes also enable DSA of the BCP on topographically patterned substrates. UV-O3 exposure was also used to reveal the BCP structure and provide an in situ "hard mask" for pattern transfer to the substrate.
Research output: Contribution to journal › Article › Scientific › peer-review
We present our effort on an efficient way of tuning the nonlinear absorption mechanisms in ultra-small CdSe based quantum dots by implementing core-shell and core/multi-shell architectures. Depending on the size, architecture and composition of the QDs, these materials exhibited resonant and near-resonant nonlinear optical absorption properties such as saturable (SA) and reverse saturable (RSA) absorption for 5 ns pulses of 532 nm. These QDs exhibited a non-monotonic dependence of the effective two-photon absorption coefficient (β) under nanosecond excitation with a maximum value for a thinner shell. We obtained a nonlinear absorption enhancement of an order of magnitude by adopting the core-shell architecture compared to their individual counterparts. Interestingly, CdSe QDs exhibit SA and/or RSA depending on their size and show a switching over from SA to RSA as the input intensity increases. We explained the enhanced nonlinear absorption in core-shell QDs compared to their individual counterparts in view of enhanced local fields associated with the core-shell structure. Thus, the present nanostructured materials are excellent candidates as saturable absorbers and optical limiters.
Research output: Contribution to journal › Article › Scientific › peer-review
A novel kind of fluoroelastomer nanocomposites based on tube-like halloysite clay mineral were successfully prepared using a bis-phenol curing system, which resulted in prominent improvements in mechanical and dynamic mechanical properties and in the elevation as high as 30 K of the thermal decomposition temperature. Wide-angle X-ray scattering and transmission electron microscopy techniques were employed to assess the morphology developed in the nanocomposites, while stress strain diagrams were used to evaluate the mechanical properties. These nanocomposites were further characterized by moving die rheometer, dynamic mechanical properties and thermo-gravimetric analysis. Structure-properties relationship and the improvement of the mechanical, dynamic mechanical and thermal properties of fluoroelastomers are reported in the present study. Increasing amount of the filler reduced the curing efficiency of the bis-phenol curing system, which was evident from the rheometric and physical properties of the resulting composites. A sort of filler-filler interaction was perceived during the strain sweep analysis of the composites. The polymer-filler interaction was reflected in the improved mechanical and thermal properties which were the consequence of proper dispersion of the nanotubes in the polymer matrix; whereas the intercalation of macromolecular chains into the nanotubes was not reflected in the X-ray diffraction analysis.
Research output: Contribution to journal › Article › Scientific › peer-review
Microalgae have received significant attention as promising resources for biodiesel. However, the downstream processes for the production of biodiesel, which range from cultivation, harvesting, dewatering, and lipid extraction to oil upgrading, are economically impracticable and can be improved. Therefore, efficient microalgal harvesting and integrated technologies are required to realize microalgae-based biodiesel. Herein, tri-functional (cationic, magnetic, and lipophilic) carbon microparticles filled with magnetite (Fe<inf>3</inf>O<inf>4</inf>) are synthesized through one-step aerosol spray pyrolysis and applied in microalgal harvesting and serial microalgal lipid entrapment. Carbon microparticles are tri-functional in the following respects: (i) the cationic carbon microparticles facilitate flocculation with anionic microalgae due to electrostatic attractions; (ii) the magnetic properties of the carbon microparticles, owing to embedded magnetites, enable the separation of microalgal flocs from low concentration cultures (~2gL<sup>-1</sup>) with a separation efficiency of 99%; and (iii) the lipophilicity enables the recovery of lipid droplets extracted from oleaginous microalgae. Microalgal lipids are directly separated through adsorption onto magnetic carbon microparticles from concentrated microalgal slurries after harvesting. The tri-functionality may facilitate the integrated use of magnetic carbon microparticles in microalgal biorefineries and the tri-functional microparticles could potentially be applied in various areas such as biomedicine, catalysis, magnetism, energy materials, and environmental remediation.
Research output: Contribution to journal › Article › Scientific › peer-review
This paper provides a comprehensive assessment of the sliding and abrasive wear behaviour of WC-10Co4Cr hardmetal coatings, representative of the existing state-of-the-art. A commercial feedstock powder with two different particle size distributions was sprayed onto carbon steel substrates using two HVOF and two HVAF spray processes. Mild wear rates of <10-7mm3/(Nm) and friction coefficients of ≈0.5 were obtained for all samples in ball-on-disk sliding wear tests at room temperature against Al2O3 counterparts. WC-10Co4Cr coatings definitely outperform a reference electrolytic hard chromium coating under these test conditions. Their wear mechanisms include extrusion and removal of the binder matrix, with the formation of a wavy surface morphology, and brittle cracking. The balance of such phenomena is closely related to intra-lamellar features, and rather independent of those properties (e.g. indentation fracture toughness, elastic modulus) which mainly reflect large-scale inter-lamellar cohesion, as quantitatively confirmed by a principal component analysis. Intra-lamellar dissolution of WC into the matrix indeed increases the incidence of brittle cracking, resulting in slightly higher wear rates. At 400°C, some of the hardmetal coatings fail because of the superposition between tensile residual stresses and thermal expansion mismatch stresses (due to the difference between the thermal expansion coefficients of the steel substrate and of the hardmetal coating). Those which do not fail, on account of lower residual stresses, exhibit higher wear rates than at room temperature, due to oxidation of the WC grains.The resistance of the coatings against abrasive wear, assessed by dry sand-rubber wheel testing, is related to inter-lamellar cohesion, as proven by a principal component analysis of the collected dataset. Therefore, coatings deposited from coarse feedstock powders suffer higher wear loss than those obtained from fine powders, as brittle inter-lamellar detachment is caused by their weaker interparticle cohesion, witnessed by their systematically lower fracture toughness as well.
Research output: Contribution to journal › Article › Scientific › peer-review
Tribocorrosion behaviour of aluminium bronze CuAl10Fe5Ni5 in 3.5 wt.% NaCl solution was investigated in a pin-on-disc facility containing an electrochemical cell. Oxidising capacity and contact pressure to alumina counterbody were varied. Pure corrosion occurred as selective dissolution of α phase included in the eutectoid structure. Contact to counterbody introduced plastic deformation, extrusion of the material and abrasive wear. Wear-corrosion interactions varied between the two contact pressures, with lower material losses appearing at the higher pressure. The significant acceleration of material degradation by the interactions was not clearly reflected to kinetics or thermodynamics of corrosion. These results are presented and discussed here.
EXT="Huttunen-Saarivirta, E."
EXT="Isotahdon, E."
EXT="Metsäjoki, J."
Research output: Contribution to journal › Article › Scientific › peer-review
We use photoelectron emission spectroscopy with vacuum microjet technique and quantum chemistry calculations to investigate electronic structure and stability of aqueous phosphate anions. On the basis of the measured photoelectron spectra of sodium phosphates at different pH, we report the lowest vertical ionization energies of monobasic (9.5 eV), dibasic (8.9 eV), and tribasic (8.4 eV) anions. Electron binding energies were in tandem modeled with ab initio methods, using a mixed dielectric solvation model together with up to 64 explicitly solvating water molecules. We demonstrate that two solvation layers of explicit water molecules are needed to obtain converged values of vertical ionization energies (VIEs) within this mixed solvation model, leading to very good agreement with experiment. We also show that the highly charged PO4 3- anion, which is electronically unstable in the gas phase, gains the electronic stability with about 16 water molecules, while only 2-3 water molecules are sufficient to stabilize the doubly charged phosphate anion. We also investigate the effect of ion pairing on the vertical ionization energy. In contrast to protonation (leading to a formation of covalent O-H bond), sodiation (leading to an anion···Na+ ion pair) has only a weak effect on the electron binding energy.
Research output: Contribution to journal › Article › Scientific › peer-review
Polymer multilayered nanocoating capable of concentrating various chemical substances at IR-ATR waveguide surfaces is described. The coating affinity to an analyte played a pivotal role in sensitivity enhancement of the IR-ATR measurements, since the unmodified waveguide did not show any analyte detection.
Research output: Contribution to journal › Article › Scientific › peer-review
Advanced material development, including at the nanoscale, comprises costly and complex challenges coupled to ensuring human and environmental safety. Governmental agencies regulating safety have announced interest toward acceptance of safety data generated under the collective term New Approach Methodologies (NAMs), as such technologies/approaches offer marked potential to progress the integration of safety testing measures during innovation from idea to product launch of nanomaterials. Divided in overall eight main categories, searchable databases for grouping and read across purposes, exposure assessment and modeling, in silico modeling of physicochemical structure and hazard data, in vitro high-throughput and high-content screening assays, dose-response assessments and modeling, analyses of biological processes and toxicity pathways, kinetics and dose extrapolation, consideration of relevant exposure levels and biomarker endpoints typify such useful NAMs. Their application generally agrees with articulated stakeholder needs for improvement of safety testing procedures. They further fit for inclusion and add value in nanomaterials risk assessment tools. Overall 37 of 50 evaluated NAMs and tiered workflows applying NAMs are recommended for considering safer-by-design innovation, including guidance to the selection of specific NAMs in the eight categories. An innovation funnel enriched with safety methods is ultimately proposed under the central aim of promoting rigorous nanomaterials innovation.
INT=bmte, "Greco, Dario"
dupl=51711359
Research output: Contribution to journal › Review Article › Scientific › peer-review
Structural dynamics of the polyethylenimine-DNA and poly(l-lysine)-DNA complexes (polyplexes) was studied by steady-state and time-resolved fluorescence spectroscopy using the fluorescence resonance energy transfer (FRET) technique. During the formation of the DNA polyplexes, the negative phosphate groups (P) of DNA are bound by the positive amine groups (N) of the polymer. At N/P ratio 2, nearly all of the DNA's P groups are bound by the polymer N groups: These complexes form the core of the polyplexes. The excess polymer, added to this system to increase the N/P ratio to the values giving efficient gene delivery, forms a positively charged shell around the core polyplex. We investigated whether the exchange between the core and shell regions of PEI and PLL polyplexes takes place. Our results demonstrated a clear difference between the two studied polymers. Shell PEI can replace PEIs previously attached to DNA in the polyplex core, while PLL cannot. Such a dynamic structure of PEI polyplexes compared to a more static one found for PLL polyplexes partially explains the observed difference in the DNA transfection efficiency of these polyplexes. Moreover, the time-resolved fluorescence spectroscopy revealed additional details on the structure of PLL polyplexes: In between the core and shell, there is an intermediate layer where both core and shell PLLs or their parts overlap.
Research output: Contribution to journal › Article › Scientific › peer-review
This IUPAC Technical Report describes and compares the currently applied methods for measuring and analyzing time-resolved fluorescence traces using phase-modulation fluorometry as well as pulse fluorometry (direct emission decay measurements, single-photon timing, streak camera measurements, fluorescence upconversion, and optical Kerr gating). The paper starts with a brief description of the basic principles for time and frequency domain fluorescence spectroscopy. The fundamental equations are given, and recommendations for adequate use are emphasized. The up-to-date, commonly employed excitation sources and photodetectors are described in detail. The analysis of time-resolved fluorescence data is discussed. Attention is paid to possible artifacts, and remedies are presented on how to avoid them or to account for them. Finally, fluorescence lifetime standards for the nanosecond and picosecond timescales are collected.
Research output: Contribution to journal › Article › Scientific › peer-review
Metal-catalyzed coupling reactions are very efficient and reliable methods for the introduction of new carbon-carbon bonds onto molecules attached to a solid support. This review summarizes recent advances in utilizing the three most used methods, the Suzuki reaction, the Heck reaction, and the Stille reaction, in the field of solid phase organic synthesis resulting in small organic molecule libraries.
Research output: Contribution to journal › Article › Scientific › peer-review
We present an information-theoretic method to measure the structural information content of networks and apply it to chemical graphs. As a result, we find that our entropy measure is more general than classical information indices known in mathematical and computational chemistry. Further, we demonstrate that our measure reflects the essence of molecular branching meaningfully by determining the structural information content of some chemical graphs numerically.
Research output: Contribution to journal › Article › Scientific › peer-review
Understanding the molecular mechanisms governing nanoparticle–membrane interactions is of prime importance for drug delivery and biomedical applications. Neutron reflectometry (NR) experiments are combined with atomistic and coarse-grained molecular dynamics (MD) simulations to study the interaction between cationic gold nanoparticles (AuNPs) and model lipid membranes composed of a mixture of zwitterionic di-stearoyl-phosphatidylcholine (DSPC) and anionic di-stearoyl-phosphatidylglycerol (DSPG). MD simulations show that the interaction between AuNPs and a pure DSPC lipid bilayer is modulated by a free energy barrier. This can be overcome by increasing temperature, which promotes an irreversible AuNP incorporation into the lipid bilayer. NR experiments confirm the encapsulation of the AuNPs within the lipid bilayer at temperatures around 55 °C. In contrast, the AuNP adsorption is weak and impaired by heating for a DSPC–DSPG (3:1) lipid bilayer. These results demonstrate that both the lipid charge and the temperature play pivotal roles in AuNP–membrane interactions. Furthermore, NR experiments indicate that the (negative) DSPG lipids are associated with lipid extraction upon AuNP adsorption, which is confirmed by coarse-grained MD simulations as a lipid-crawling effect driving further AuNP aggregation. Overall, the obtained detailed molecular view of the interaction mechanisms sheds light on AuNP incorporation and membrane destabilization.
EXT="Martinez-Seara, Hector"
Research output: Contribution to journal › Article › Scientific › peer-review
Symmetry is an important visual feature for humans and its application in architecture is completely evident. This paper aims to investigate the role of symmetry in the aesthetics judgment of residential building façades and study the pattern of eye movement based on the expertise of subjects in architecture. In order to implement this in the present paper, we have created images in two categories: symmetrical and asymmetrical façade images. The experiment design allows us to investigate the preference of subjects and their reaction time to decide about presented images as well as record their eye movements. It was inferred that the aesthetic experience of a building façade is influenced by the expertise of the subjects. There is a significant difference between experts and non-experts in all conditions, and symmetrical façades are in line with the taste of non-expert subjects. Moreover, the patterns of fixational eye movements indicate that the horizontal or vertical symmetry (mirror symmetry) has a profound influence on the observer's attention, but there is a difference in the points watched and their fixation duration. Thus, although symmetry may attract the same attention during eye movements on façade images, it does not necessarily lead to the same preference between the expert and non-expert groups.
Research output: Contribution to journal › Article › Scientific › peer-review
The aim of the present work is to evidence the role of the linked phospholipids of natural rubber (NR) in the rubber-carbon nanotube (CNT) interactions in rubber composites. Three rubbers namely NR, deproteinized NR (DPNR) and a synthetic rubber isoprene (IR) were used as matrix for CNTs. The selective wetting of CNTs in miscible NR/IR and DPNR/IR blends was investigated by means of the modified wetting concept based on Fourier transformed infrared (FTIR) analysis of the rubber-filler gel of blends. It revealed that the surface of CNTs is entirely wetted by NR or DPNR molecules, respectively, but not by IR. This result emphasizes that proteins do not influence the affinity between NR and CNTs, while the linked phospholipids interact with CNT surface through cation-π linkage. This linkage acts as anchor point supporting NR molecules to wet CNT surface effectively. The modified wetting concept can be used for characterization of selective wetting of different fillers in blends consisting of miscible rubber components.
Research output: Contribution to journal › Article › Scientific › peer-review
Over Boreal regions, monoterpenes emitted from the forest are the main precursors for secondary organic aerosol (SOA) formation and the primary driver of the growth of new aerosol particles to climatically important cloud condensation nuclei (CCN). Autoxidation of monoterpenes leads to rapid formation of Highly Oxygenated organic Molecules (HOM). We have developed the first model with near-explicit representation of atmospheric new particle formation (NPF) and HOM formation. The model can reproduce the observed NPF, HOM gas-phase composition and SOA formation over the Boreal forest. During the spring, HOM SOA formation increases the CCN concentration by ~10 % and causes a direct aerosol radiative forcing of −0.10 W/m2. In contrast, NPF reduces the number of CCN at updraft velocities < 0.2 m/s, and causes a direct aerosol radiative forcing of +0.15 W/m2. Hence, while HOM SOA contributes to climate cooling, NPF can result in climate warming over the Boreal forest.
Research output: Contribution to journal › Article › Scientific › peer-review
Photoisomerization of azobenzene derivatives is a versatile tool for devising light-responsive materials for a broad range of applications in photonics, robotics, microfabrication, and biomaterials science. Some applications rely on fast isomerization kinetics, while for others, bistable azobenzenes are preferred. However, solid-state materials where the isomerization kinetics depends on the environmental conditions have been largely overlooked. Herein, an approach to utilize the environmental sensitivity of isomerization kinetics is developed. It is demonstrated that thin polymer films containing hydroxyazobenzenes offer a conceptually novel platform for sensing hydrogen-bonding vapors in the environment. The concept is based on accelerating the thermal cis-trans isomerization rate through hydrogen-bond-catalyzed changes in the thermal isomerization pathway, which allows for devising a relative humidity sensor with high sensitivity and quick response to relative humidity changes. The approach is also applicable for detecting other hydrogen-bonding vapors such as methanol and ethanol. Employing isomerization kinetics of azobenzenes for vapor sensing opens new intriguing possibilities for using azobenzene molecules in the future.
Research output: Contribution to journal › Article › Scientific › peer-review
First-principles density functional theory calculations in the generalized gradient approximation, with plane wave basis set and pseudopotentials, have been used to investigate the desorption pathways of molecular oxygen species adsorbed on the SnO2 (110) surface. Energetics of the thermodynamically favored precursors is studied in dependence on the surface charge provided either by surface defects or by donor type impurities from the near-surface region. The resonant desorption modes of O2 molecules are examined in the framework of ab initio atomic thermodynamics and relationship of these results to experimental observations is discussed.
Research output: Contribution to journal › Article › Scientific › peer-review
The Hosoya index of a graph is defined by the total number of the matchings of the graph. In this paper, we determine the maximum Hosoya index of unicyclic graphs with n vertices and diameter 3 or 4. Our results somewhat answer a question proposed by Wagner and Gutman in 2010 for unicyclic graphs with small diameter.
Research output: Contribution to journal › Article › Scientific › peer-review
Phosphorus is found to have a deactivating effect on the catalytic activity of the studied natural-gas-oxidation catalyst. Accelerated laboratory-scale phosphorus treatment was done to the PtPd/Al2O3 natural gas oxidation catalyst. The effect of phosphorus after low (0.065 M) and high (0.13 M) phosphorus concentration treatments was studied by using an inductively coupled plasma optical emission spectroscopy, N2 physisorption, X-ray diffraction, field emission scanning electron microscopy, transmission electron microscopy, and X-ray photoelectron spectroscopy. In addition, the behavior of the catalyst was studied by a Gasmet FT-IR gas analyzer. Based on the received results it can be concluded that phosphorus was adsorbed on the surface by chemical bonds forming phosphates (PO4). In addition, the partial transformation of PdO to Pd was observed. Due to the phosphorus adsorption both the CO and CH4 oxidation activities were lower after the phosphorus treatments compared with the fresh catalyst.
Research output: Contribution to journal › Article › Scientific › peer-review
In this paper we extend earlier results on Hosoya entropy (H-entropy) of graphs, and establish connections between H-entropy and automorphisms of graphs. In particular, we determine the H-entropy of graphs whose automorphism group has exactly two orbits, and characterize some classes of graphs with zero H-entropy.
Research output: Contribution to journal › Article › Scientific › peer-review
Halogen bonding is an emerging noncovalent interaction for constructing supramolecular assemblies. Though similar to the more familiar hydrogen bonding, four primary differences between these two interactions make halogen bonding a unique tool for molecular recognition and the design of functional materials. First, halogen bonds tend to be much more directional than (single) hydrogen bonds. Second, the interaction strength scales with the polarizability of the bond-donor atom, a feature that researchers can tune through single-atom mutation. In addition, halogen bonds are hydrophobic whereas hydrogen bonds are hydrophilic. Lastly, the size of the bond-donor atom (halogen) is significantly larger than hydrogen. As a result, halogen bonding provides supramolecular chemists with design tools that cannot be easily met with other types of noncovalent interactions and opens up unprecedented possibilities in the design of smart functional materials.This Account highlights the recent advances in the design of halogen-bond-based functional materials. Each of the unique features of halogen bonding, directionality, tunable interaction strength, hydrophobicity, and large donor atom size, makes a difference. Taking advantage of the hydrophobicity, researchers have designed small-size ion transporters. The large halogen atom size provided a platform for constructing all-organic light-emitting crystals that efficiently generate triplet electrons and have a high phosphorescence quantum yield. The tunable interaction strengths provide tools for understanding light-induced macroscopic motions in photoresponsive azobenzene-containing polymers, and the directionality renders halogen bonding useful in the design on functional supramolecular liquid crystals and gel-phase materials. Although halogen bond based functional materials design is still in its infancy, we foresee a bright future for this field. We expect that materials designed based on halogen bonding could lead to applications in biomimetics, optics/photonics, functional surfaces, and photoswitchable supramolecules.
Research output: Contribution to journal › Article › Scientific › peer-review
Natural gas engine particle emissions were studied using an old gasoline engine modified to run with natural gas. The tests were steady-state tests performed on two different low loads in an engine dynamometer. Exhaust particle number concentration, size distribution, volatility and electric charge were measured. Exhaust particles were observed to have peak diameters below 10 nm. To get the full picture of particle emissions from natural gas engines, size range 1-5 nm is relevant and important to take into consideration. A particle size magnifier (PSM) was used in this engine application for measuring particles smaller than 3 nm and it proved to be a useful instrument when measuring natural gas engine exhaust particles. It is concluded that the detected particles probably originated from the engine cylinders or their vicinity and grew to detectable sizes in the sampling process because a small fraction of the particles were observed to carry electric charge and the particles did not evaporate totally at 265°C.
Research output: Contribution to journal › Article › Scientific › peer-review
The gold cluster compounds Au38(SC2H4Ph)24 and [Au25(PPh3)10(SC2H4Ph)5Cl2]2+ are known to possess bi-icosahedral Au23 and Au25 cores, respectively, inside their ligand shells. These Au cores can be viewed as quasi-molecules composed of two Au13 superatoms sharing three and one Au+ atoms, respectively. In the present work, we studied the structural changes of these gold di-superatomic molecules upon electrooxidation via spectroelectrochemical techniques, X-ray absorption fine structure analysis, and density functional theory calculations. The Au23 core was electrochemically stable, but the Au25 core underwent irreversible structural change. This marked difference in the stability of the oxidized states is ascribed to differences in the bonding scheme of Au13 units and/or the bonding nature of the protecting ligands.
Research output: Contribution to journal › Article › Scientific › peer-review
The most important function of a packaging material is to shield the product inside the package. Extrusion coated papers and paperboards are generally used in various consumer packages like food, medical and cosmetic packages. Extrusion coatings give a barrier against water, water vapour, aroma, grease, oxygen, etc. In addition to barrier properties, heat sealability and printability are important properties in packaging applications. From the point of view of printing, the dense and impervious structure of extrusion coatings is challenging: printing inks and toners do not penetrate into the coatings. The durability of the printed image is significant, because the image must withstand various converting operations when the package is constructed. The most common method for obtaining good ink or toner adhesion is to oxidise the surface. Surface treatments are used to change the chemical composition, increase surface energy, modify surface morphology and topography, or remove contaminants and weak boundary layers. Two widely used methods are corona discharge treatment and flame treatment. These processes generally cause physical and chemical changes in a thin surface layer without affecting the bulk properties. Treatments will increase surface energy and also provide polar molecular groups necessary for good bonds between ink/toner and polymer molecules. In addition to printability, surface treatments also affect the sealing properties, i.e. initial heat sealing temperature, initial hot tack temperature, sealing window and seal strength of extrusion coatings. Both the sealability of packaging material and the tightness of the seal are critical points in the manufacturing process of packages and of the final package. The printability must be obtained without losing the sealability properties. In the first part of this research (TAPPI European PLACE 2007), surface energy, printability and sealability of low density polyethylene (PE-LD) coated paperboard after flame and corona treatments were studied. In this second part of the study, the research is extended to other polyolefins, i.e. high-density polyethylene (PE-HD) and polypropylene (PP). The surface chemistry is evaluated with contact angle measurements and X-ray photoelectron spectroscopy (XPS) measurements. Scanning electron microscopy (SEM) and optical profilometry are used to study the topographical and morphological changes on the surfaces. Furthermore, the heat sealing and hot tack properties, and water vapour barrier properties of the extrusion coatings are evaluated. The aim of this study is also to evaluate the printability of the extrusion coatings and to map out the role of surface modification in print quality formation. This study has concentrated on digital printing, particularly on the dry toner-based electrophotographic printing process. Flame treatment decreases the contact angle of water on PE-LD, PE-HD and PP coated papers more than corona treatment, but the lowest contact angle is obtained when the treatments are used simultaneously (i.e. co-effect of the treatments). Flame treatment deteriorates the sealability properties of PE-LD coated paper, whereas corona treatment improves sealability for example by decreasing the minimum heat sealing temperature. The sealability properties of PE-HD and PP coated papers are improved not only by corona treatment, but also by flame treatment. Flame treatment significantly improves the water vapour barrier of PEs. Where printability is concerned, it can be noticed that all the treatments improve rub-off resistance with PEs. With PE-LD flame is the most effective, and with PE-HD corona. With PP, the co-treatment gives the best result. Morphological changes in micro- and nano- scale were most observed on the flame treated PE-LD surface, whereas the electret phenomenon was observed on PE-LD, PE-HD and PP surfaces only after corona treatment.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Birch wood was leached of its naturally occurring ash forming elements and doped with three concentrations of calcium or potassium before being gasified in a laboratory bubbling fluidized bed reactor. The wood samples were pelletized and inserted into a fluidized bed reactor where they were first pyrolyzed with N2 and then gasified with CO2. In addition to tracking the gas concentration of the exit gas, char samples were taken from the fluidized bed and analyzed to study the char properties. The presence of potassium in the biomass was found to have a significant influence on the structure of the resulting char, however potassium did not have an observable catalytic effect on the overall gasification reaction rate with CO2 due to the formation of a unreactive coke layer on the char surface. In contrast, calcium did increase the char conversion rate and is likely the primary active catalyst in gasification of birch wood with CO2.
Research output: Contribution to journal › Article › Scientific › peer-review
In many applications, rubber linings protect metal surfaces from the environment and prolong the service life of the metal components significantly. The loss of adhesion and resulting premature failure at the rubber-metal interface may generate an un-planned shutdown and production losses. This work focuses on the effect of various sand blasting methods on the long-term adhesion between bromobutyl rubber and stainless steel in a hot and humid environment. Softer austenitic stainless steel and harder, chemically more resistant super duplex stainless steel grades were used as substrates. It was found, that the developed interfacial area ratio Sdr, which is the additional surface area contributed by the texture as compared to the planar definition area, had the best correlation with the sand blasting media characteristics, namely to the hardness. The proportionality between other sand blasting medium characteristics and the Sdr value was poor. The initial adhesion between the rubber and the substrates was defined by the cohesive strength of the rubber and unaffected by the substrate characteristics and the sand blasting medium contaminants on the substrates. After a 4–12-week exposure in hot and humid environment, the use of corrosive sand blasting medium (steel grit) resulted in significant adhesion loss whereas the use of inert sand blasting media (feldspar or corundum) maintained the adhesion better. However, the adhesion system at the interface degraded causing performance loss. Neither the better corrosion resistance of super duplex stainless steel nor increased surface roughness improved the reliability of rubber lining in extreme conditions.
EXT="Lindgren, M."
EXT="Laihonen, P."
EXT="Juutilainen, M."
Research output: Contribution to journal › Article › Scientific › peer-review
Start-up of bioelectrochemical systems (BESs) fed with brewery wastewater was compared at different adjusted anode potentials (−200 and 0 mV vs. Ag/AgCl) and external resistances (50 and 1000 Ω). Current generation stabilized faster with the external resistances (9 ± 3 and 1.70 ± 0.04 A/m3 with 50 and 1000 Ω, respectively), whilst significantly higher current densities of 76 ± 39 and 44 ± 9 A/m3 were obtained with the adjusted anode potentials of −200 and 0 mV vs. Ag/AgCl, respectively. After start-up, when operated using 47 Ω external resistance, the current densities and Coulombic efficiencies of all BESs stabilized to 9.5 ± 2.9 A/m3 and 12 ± 2%, respectively, demonstrating that the start-up protocols were not critical for long-term BES operation in microbial fuel cell mode. With adjusted anode potentials, two times more biofilm biomass (measured as protein) was formed by the end of the experiment as compared to start-up with the fixed external resistances. After start-up, the organics in the brewery wastewater, mainly sugars and alcohols, were transformed to acetate (1360 ± 250 mg/L) and propionate (610 ± 190 mg/L). Optimized start-up is required for prompt BES recovery, for example, after process disturbances. Based on the results of this study, adjustment of anode potential to −200 mV vs. Ag/AgCl is recommended for fast BES start-up.
Research output: Contribution to journal › Article › Scientific › peer-review
The effect of lipid oxidation on water permeability of phosphatidylcholine membranes was investigated by means of both scattering stopped flow experiments and atomistic molecular dynamics simulations. Formation of water pores followed by a significant enhancement of water permeability was observed. The molecules of oxidized phospholipids facilitate pore formation and subsequently stabilize water in the membrane interior. A wide range of oxidation ratios, from 15 to 100 mol%, was considered. The degree of oxidation was found to strongly influence the time needed for the opening of a pore. In simulations, the oxidation ratio of 75 mol% was found to be a threshold for spontaneous pore formation in the tens of nanosecond timescale, whereas 15 mol% of oxidation led to significant water permeation in the timescale of seconds. Once a pore was formed, the water permeability was found to be virtually independent of the oxidation ratio. This journal is
Research output: Contribution to journal › Article › Scientific › peer-review
Kallikrein-related peptidase3 (KLK3), also known as prostate-specific antigen (PSA), is the most useful biomarker for prostate cancer (PCa). KLK3 is suggested to play a role in regulating cancer growth through anti-angiogenic activity invivo and invitro. This feature, together with its specificity for prostate tissue, makes KLK3 an intriguing target for the design of new therapies for PCa. 3D pharmacophores for KLK3-stimulating compounds were generated based on peptides that bind specifically to KLK3 and increase its enzymatic activity. As a result of pharmacophore-based virtual screening, four small, drug-like compounds with affinity for KLK3 were discovered and validated by capillary differential scanning calorimetry. One of the compounds also stimulated the activity of KLK3, and is therefore the first published small molecule with such an activity. Target specificity: Successful 3D pharmacophore-based virtual screening resulted in the first small, drug-like molecule that stimulates the activity of kallikrein-related peptidase3 (KLK3, PSA). The compound discovered can be applied to the design of novel KLK3-stimulating compounds with the potential to inhibit tumor angiogenesis and progression of prostate cancer.
Research output: Contribution to journal › Article › Scientific › peer-review
Single-particle tracking (SPT) is an experimental technique that allows one to follow the dynamics of individual molecules in biological membranes with unprecedented precision. Given the importance of lipid and membrane protein diffusion in the formation of nanoscale functional complexes, it is critical to understand what exactly is measured in SPT experiments. To clarify this issue, we employed nanoscale computer simulations designed to match SPT experiments that exploit streptavidin-functionalized Au nanoparticles (AuNPs). The results show that lipid labeling interferes critically with the diffusion process; thus, the diffusion measured in SPT is a far more complex process than what has been assumed. It turns out that the influence of AuNP-based labels on the dynamics of probe lipids includes not only the AuNP-induced viscous drag that is the more significant the larger the NP but, more importantly, also the effects related to the interactions of the streptavidin linker with membrane lipids. Due to these effects, the probe lipid moves in a concerted manner as a complex with the linker protein and numerous unlabeled lipids, which can slow down the motion of the probe by almost an order of magnitude. Furthermore, our simulations show that nonlinker streptavidin tetramers on the AuNP surface are able to interact with the membrane lipids, which could potentially lead to multivalent labeling of the NPs by the probe lipids. Our results further demonstrate that in the submicrosecond time domain the motion of the probe lipid is uncorrelated with the motion of the AuNP, showing that there is a 1 μs limit for the temporal resolution of the SPT technique. However, this limit for the temporal resolution depends on the nanoparticle size and increases rapidly with growing AuNPs. Overall, the results provide a molecular-scale framework to accurately interpret SPT data and to design protocols that minimize label-induced artifacts.
Research output: Contribution to journal › Article › Scientific › peer-review
The nature of C-I···-O-N+ interactions, the first of its kind, between nonfluorinated tetraiodoethylene halogen bond (XB) donor and pyridine N-oxides (PyNO) are studied by single-crystal X-ray diffraction and density functional theory (DFT) calculations. Despite the nonfluorinated nature of the C2I4, the I···O halogen bond distances are similar to well-known perfluorohaloalkane/-arene donor-PyNO analogues. With C2I4, oxygens of the N-oxides adopt exclusively μ2-XB coordination in contrast to the versatile bonding modes observed with perfluorinated XB donors. The C2I4 as the XB donor forms with PyNO's one-dimensional chain polymer structures in which the C2I4···(μ-PyNO)2···C2I4 segments manifest two bonding motifs, namely, side-by-side (vicinal di-iodo) and head-to-head (geminal di-iodo), due to the nearly symmetric square-planar structure of the C2I4. While the attractive nature between I and O atoms is mainly electrostatic, the narrow range of C···O bond parameters demonstrates that the ?-bond between four iodine atoms also plays an important role in enhancing the σ-hole strength. DFT-Based monodentate XB interaction energies, ?Eint, in 13 1:1 XB complexes vary between 31.9 and 46.5 kJ mol-1, the strongest remarkably exceeding the value reported for I-I···-O-N+ = 42.0 kJ mol-1. In the case of C2I4·(pyridine N-oxide) [31.9 kJ mol-1], the monodentate XB energy is on a par with perfluorinated donor complexes, namely, CF3I·(pyridine N-oxide) [31.1 kJ mol-1] and C6F5I·(pyridine N-oxide) [32.3 kJ mol-1].
Research output: Contribution to journal › Article › Scientific › peer-review
In this work, we report about the mechanical relaxation characteristics of an intrinsically self-healable imidazole modified commercial rubber. This kind of self-healing rubber was prepared by melt mixing of 1-butyl imidazole with bromo-butyl rubber (bromine modified isoprene-isobutylene copolymer, BIIR). By this melt mixing process, the reactive allylic bromine of bromo-butyl rubber was converted into imidazole bromide salt. The resulting development of an ionic character to the polymer backbone leads to an ionic association of the groups which ultimately results to the formation of a network structure of the rubber chains. The modified BIIR thus behaves like a robust crosslinked rubber and shows unusual self-healing properties. The non-covalent reversible network has been studied in detail with respect to stress relaxation experiments, scanning electron microscopic and X-ray scattering.
Research output: Contribution to journal › Article › Scientific › peer-review
The decrease of stress at constant strain, that is, the stress relaxation process as a function of temperature, is a central mechanical characteristics of elastomer nanocomposites for their potential applications. However, in the conventional stress relaxation test, the relaxation behavior is usually determined as a function of time at constant temperature. The present work reports the temperature scanning stress relaxation (TSSR) characteristics of a new kind of mechanically adaptive elastomer nanocomposite by monitoring the nonisothermal relaxation behavior as a function of temperature. This kind of adaptive elastomer nanocomposite was prepared by introducing calcium sulfate (CaSO4), as the water-responsive phase into the hydrophilic elastomer matrix. The influence of water-induced structural changes on TSSR behavior was investigated. Water treatment had a strong effect on the shape of the relaxation spectrum of the nanocomposite. It was revealed that the in situ development of hydrated nano-rod crystal structures of CaSO4 in the elastomer matrix was responsible for the changes in the mechanical relaxation behavior of the composites. Atomic force microscopy was used to verify this nano-rod crystal morphology in the elastomer matrix. The mechanism of water-induced mechanical reinforcement of the composite was explored from dynamic mechanical analysis of the material and correlated with its stress relaxation behavior.
Research output: Contribution to journal › Article › Scientific › peer-review
Interactions between taste compounds and nanofibrillar cellulose were studied. For this, a new fluorescent indicator displacement method was developed. Two fluorescent indicators, namely, Calcofluor white and Congo red, were chosen because of their specific binding to cellulose and intrinsic fluorescence. Seven taste compounds with different structures were successfully measured together with nanofibrillar cellulose (NFC) and ranked according to their binding constants. The most pronounced interactions were found between quinine and NFC (1.4 × 104 M−1), whereas sucrose, aspartame and glutamic acid did not bind at all. Naringin showed moderate binding while stevioside and caffeine exhibited low binding. The comparison with microcrystalline cellulose indicates that the larger surface area of nanofibrillated cellulose enables stronger binding between the binder and macromolecules. The developed method can be further utilized to study interactions of different compound classes with nanocellulose materials in food, pharmaceutical and dye applications, using a conventional plate reader in a high-throughput manner.
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Cholesterol renders mammalian cell membranes more compact by reducing the amount of voids in the membrane structure. Because of this, cholesterol is known to regulate the ability of cell membranes to prevent the permeation of water and water-soluble molecules through the membranes. Meanwhile, it is also known that even seemingly tiny modifications in the chemical structure of cholesterol can lead to notable changes in membrane properties. The question is, how significantly do these small changes in cholesterol structure affect the permeability barrier function of cell membranes? In this work, we applied fluorescence methods as well as atomistic molecular dynamics simulations to characterize changes in lipid membrane permeability induced by cholesterol oxidation. The studied 7β-hydroxycholesterol (7β-OH-chol) and 27-hydroxycholesterol (27-OH-chol) represent two distinct groups of oxysterols, namely, ring- and tail-oxidized cholesterols, respectively. Our previous research showed that the oxidation of the cholesterol tail has only a marginal effect on the structure of a lipid bilayer; however, oxidation was found to disturb membrane dynamics by introducing a mechanism that allows sterol molecules to move rapidly back and forth across the membrane-bobbing. Herein, we show that bobbing of 27-OH-chol accelerates fluorescence quenching of NBD-lipid probes in the inner leaflet of liposomes by dithionite added to the liposomal suspension. Systematic experiments using fluorescence quenching spectroscopy and microscopy led to the conclusion that the presence of 27-OH-chol increases membrane permeability to the dithionite anion. Atomistic molecular dynamics simulations demonstrated that 27-OH-chol also facilitates water transport across the membrane. The results support the view that oxysterol bobbing gives rise to successive perturbations to the hydrophobic core of the membrane, and these perturbations promote the permeation of water and small water-soluble molecules through a lipid bilayer. The observed impairment of permeability can have important consequences for eukaryotic organisms. The effects described for 27-OH-chol were not observed for 7β-OH-chol which represents ring-oxidized sterols.
EXT="Kulig, Waldemar"
EXT="Cwiklik, Lukasz"
EXT="Rog, Tomasz"
EXT="Jungwirth, Pavel"
INT=phys,"Mikkolainen, Heikki"
Research output: Contribution to journal › Article › Scientific › peer-review
Second-harmonic generation (SHG) in resonant dielectric Mie-scattering nanoparticles has been hailed as a powerful platform for nonlinear light sources. While bulk-SHG is suppressed in elemental semiconductors, for example, silicon and germanium due to their centrosymmetry, the group of zincblende III-V compound semiconductors, especially (100)-grown AlGaAs and GaAs, have recently been presented as promising alternatives. However, major obstacles to push the technology toward practical applications are the limited control over directionality of the SH emission and especially zero forward/backward radiation, resulting from the peculiar nature of the second-order nonlinear susceptibility of this otherwise highly promising group of semiconductors. Furthermore, the generated SH signal for (100)-GaAs nanoparticles depends strongly on the polarization of the pump. In this work, we provide both theoretically and experimentally a solution to these problems by presenting the first SHG nanoantennas made from (111)-GaAs embedded in a low index material. These nanoantennas show superior forward directionality compared to their (100)-counterparts. Most importantly, based on the special symmetry of the crystalline structure, it is possible to manipulate the SHG radiation pattern of the nanoantennas by changing the pump polarization without affecting the linear properties and the total nonlinear conversion efficiency, hence paving the way for efficient and flexible nonlinear beam-shaping devices.
Research output: Contribution to journal › Article › Scientific › peer-review
Localized deformation and cracking in a system of thermally sprayed hard metal coating overlaid on a low alloy steel is studied by means of bend testing. In-situ digital image correlation measurements are used to characterize material strain field near the coating/substrate interface. The studied substrate undergoes softening upon yielding which manifests itself as narrow bands of localized shear deformation. The measurements show that the coating cracks and the substrate shear bands interact. When the coating starts cracking during the elastic loading of the substrate, the formed cracks function as nucleation points for the shear bands. In contrast, if the coating resists cracking until the yielding of the substrate, the coating cracks and substrate shear bands form simultaneously. Based on the experiments, continuum-scale finite element model of the system is developed, validated and then used for a systematic numerical analysis of the effects of substrate shear banding on the measurement of coating properties. Based on the results of this work, three main effects can be identified. Firstly, the flow localization in the substrate can increase the measured apparent (macroscopic) surface strain of the coating, if not accounted for by using microscopic techniques. Secondly, substrate shear bands increase the interfacial loading, which may cause unexpected delamination of the coating and thus affect the evaluation of the interfacial strength. Finally, substrate shear bands affect the stress state within the coating and may thus affect the cracking morphology in the coating. Therefore, based on the results of this study, if the coating and interfacial strengths are of similar magnitude with the substrate yield strength, the possible tendency of the substrate towards flow localization should be taken into account in the analysis of the coating behavior.
Research output: Contribution to journal › Article › Scientific › peer-review
A new organic–inorganic hybrid material of formula (C10H15N2)7 Sb2Cl10 Sb2Cl9 (SbCl5)2 SbCl4 2Cl·7H2O was synthesized and characterized by an X-ray diffraction analysis. It crystallizes in the triclinic system with the P(Formula presented.) space group and the following unit cell parameters a = 11.8127(3) Å, b = 15.7557(4) Å, c = 35.4511(8) Å, α = 89.409(1)°, β = 84.04(1)°, γ = 71.116(1)°, Z = 2 and V = 6207.3(3) Å3. The examination of the structure shows that the two dimensional frameworks are produced by O–H Cl, N–H⋯Cl and N–H⋯O hydrogen bonding. In addition, the most important features of crystal packing and intermolecular interactions in the title complex were quantified via Hirshfeld surface analysis. Differential scanning calorimetry has revealed a dehydration phenomenon at around 348 K. The investigation of the antioxidant activity of the title compound was carried out using the 2,2-diphenyl-1-picrylhydrazyl and ferrous iron chelating methods.
Research output: Contribution to journal › Article › Scientific › peer-review
The repertoire of synthetic methods leading to aza-analogues of polycyclic aromatic heterocycles has been enlarged by the discovery of the rearrangement of 10-substituted benzo[h]quinolines into compounds bearing an azonia-pyrene moiety. Acid-mediated intramolecular cyclization of derivatives bearing-CH2CN and-CH2CO2Et groups led to compounds bearing a 5-substi-tuted benzo[de]pyrido[3,2,1-ij]quinolinium core. Advanced photophysical studies including time-correlated single photon counting (TCSPC) and transient absorption spectroscopy of 5-aminobenzo[de]pyrido[3,2,1-ij]quinolin-4-ium salt and 5H-benzo[de]pyrido[3,2,1-ij]quinolin-5-one showed their promising optical properties such as high fluorescence quantum yields (37-59%), which was almost independent of the solvent, and high tenability of the absorption band position upon changing the solvent. The benzo[de]pyrido[3,2,1-ij]quinolinium salt selectively stains nucleic acids (in the nucleus and mitochondria) in eukary-otic cells.
Research output: Contribution to journal › Article › Scientific › peer-review
An improved procedure for the synthesis of chlorinated 5-hydroxy-4-methyl-2(5H)-furanones is described. By this method also carbon-labelled (13C and 14C at C-3) hydroxyfuranones, including mucochioric acid, can be prepared. Each step of the method was examined in an effort to optimize both the yield and the purity of the compounds.
Research output: Contribution to journal › Article › Scientific › peer-review
The preparation of unprecedented 6,12-disubstituted methanodibenzo[b,f ][1,5]dioxocins from pyrrolidine catalyzed self-condensation of 2′-hydroxyacetophenones is herein described. This method provides easy access to this highly bridged complex core, resulting in construction of two C-O and two C-C bonds, a methylene bridge and two quaternary centers in a single step. The intricate methanodibenzo[b,f ][1,5]dioxocin compounds were obtained in up to moderate yields after optimization of the reaction conditions concerning solvent, reaction times and the use of additives. Several halide substituted methanodibenzo[b,f ][1,5]dioxocins could be prepared from correspondent 2′-hydroxyacetophenones.
EXT="Valkonen, Arto"
INT=msee,"Riihonen, Vesa"
INT=msee,"Vale, João R."
Research output: Contribution to journal › Article › Scientific › peer-review
Two new 1-benzhydrylpiperazinium carboxylates with tartrate and maleate, (C17H21N2)(C4H5O6) and (C17H22N2)(C4H3O4)2, have been synthesized and characterized. Crystal structure determinations show that the compounds crystallize in the P21 and the P21/c space groups of the monoclinic system, respectively. Only in the maleate the organic group is protonated on both nitrogen atoms of piperazine ring. The infrared spectra of these compounds reported from 400 to 4000 cm−1 confirmed the presence of the principal bands assigned to the internal modes of cations and anions of both compounds. The optical band gaps were calculated and found to be 3.46 and 4.14 eV for tartrate and maleate, respectively. Different molecular motions were determinate via dielectric relaxation spectroscopy. Measurements of AC conductivity as a function of frequency at different temperatures indicated the hopping conduction mechanism. The number of 13C CP-MAS NMR lines is in good agreement with the crystallographic data. Graphical abstract: [Figure not available: see fulltext.]
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
A rare family of six discrete binuclear [PdCl(PEt3)2] phenylene ethynylene rods with alkoxy side chains (methoxy, ethoxy and heptoxy) have been developed, and their solid-state photoluminescence results have been presented and discussed. The shorter bridging ligands are of the general formula H-CC-C6H2(R)2-CC-H, where R = H, OCH3, OC2H5, and OC7H15, whereas the longer ones are based on H-CC-C6H4-CC-C6H2(R)2-CC-C6H4-CC-H, where R = OCH3, OC2H5. These ligands display increasing length in both the main dimension (backbone length) as well as the number of carbons in the side chains (R, alkoxide side chain) that stem from the central phenylene moiety. The X-ray crystal structures of two of the prepared complexes are reported: one corresponds to a shorter rod, 1,4-bis[trans-(PEt3)2ClPd-CC]-2,5-diethoxybenzene (6c), while the second one is associated with a longer rod, the binuclear complex 1,4-bis[trans-(PEt3)2ClPd-4-(-CC-C6H4-CC)]-2,5-diethoxybenzene (7c). All new compounds were characterized by NMR spectroscopy (1H, 13C{1H} and 31P{1H}) as well as ESI-MS(TOF), EA, FTIR, UV-Vis, cyclic voltammetry and solid-state photoluminescence. Our work shows the influence of the alkoxy side chains on the electronic structure of the family of binuclear Pd rods by lowering its oxidation potential. In addition to this, the increase of the length of the bridge results in a higher oxidation potential. Solid state photoluminescence results indicate that Pd complexes are characterized by a marked decrease in both the emission intensity and the fluorescence lifetime values as compared to their ligands. This behaviour could be due to some degree of ligand-to-metal charge transfer. This journal is
Research output: Contribution to journal › Article › Scientific › peer-review
A new and efficient methodology towards the synthesis of 7-pyrrolidinyl and 7,12-bispyrrolidinyl perylenemonoimide monoanhydrides (PMI monoanhydrides) and their corresponding dicarboxylic acids is devised. The high yields (70-96%) and facile synthesis of PMI monoanhydrides, as compared to traditional methodologies, make the method attractive and versatile. The reported 7,12-bispyrrolidinyl PMI monoanhydrides are a new family of peryleneimides, where both the bay-substituents are located towards the anhydride cycle. The electrochemical and optical properties of target molecules and their precursors were investigated using UV-Vis spectroscopy and differential pulse voltammetry. Atomic charges and electronic properties were calculated using density functional theory (DFT). In addition, self-assembling monolayers of the PMI monoanhydrides and their corresponding diacids were successfully formed over ZnO and TiO<inf>2</inf> films. The results of the current study indicate that these molecules are potentially good candidates for various applications in the fields of organic electronics and solar cells.
Research output: Contribution to journal › Article › Scientific › peer-review
Two diazaporphyrin (DAP)-porphyrin hetero dimers, in β-meso and β-β configurations, were prepared to study their photoinduced intramolecular electron transfer properties. The two meso nitrogen atoms in the porphyrin ring of DAP change its redox potential, making DAP more easily reduced, compared to its porphyrin counterpart. A charge-transfer from porphyrin to DAP in both hetero dimers was verified by versatile optical spectroscopic methods. The steady-state fluorescence spectra indicated an efficient intramolecular exciplex formation for both dimers. For the β-meso dimer, ultrafast time-resolved spectroscopic methods revealed the subpicosecond formation of two types of primary short-living (1-18 ps) intramolecular exciplexes, which relaxed in toluene to form a long-living final exciplex (1.4 ns) followed by a longer-living charge transfer complex (>5 ns). However, in benzonitrile, the lifetime of the final exciplex was longer (660 ps) as was that of the charge transfer complex (180 ps). The β-β analogue formed similar short-living exciplexes in both solvents, but the final exciplex and the charge transfer state had significantly shorter lifetimes. The electrochemical redox potential measurements and density functional theory calculations supported the proposed mechanism.
Research output: Contribution to journal › Article › Scientific › peer-review
Semihydrogenation of acetylene (SHA) in an ethylene-rich stream is an important process for polymer industries. Presently, Pd-based catalysts have demonstrated good acetylene conversion (XC2H2), however, at the expense of ethylene selectivity (SC2H4). In this study, we have employed a systematic approach using density functional theory (DFT) to identify the best catalyst in a Cu-Pt system. The DFT results showed that with a 55 atom system at ∼1.1 Pt/Cu ratio for Pt28Cu27/Al2O3, the d-band center shifted -2.2 eV relative to the Fermi level leading to electron-saturated Pt, which allows only adsorption of ethylene via a π-bond, resulting in theoretical 99.7% SC2H4 at nearly complete XC2H2. Based on the DFT results, Pt-Cu/Al2O3 (PtCu) and Pt/Al2O3 (Pt) nanocatalysts were synthesized via cluster beam deposition (CBD), and their properties and activities were correlated with the computational predictions. For bimetallic PtCu, the electron microscopy results show the formation of alloys. The bimetallic PtCu catalyst closely mimics the DFT predictions in terms of both electronic structure, as confirmed by X-ray photoelectron spectroscopy, and catalytic activity. The alloying of Pt with Cu was responsible for the high C2H4 specific yield resulting from electron transfer between Cu and Pt, thus making PtCu a promising catalyst for SHA.
Research output: Contribution to journal › Article › Scientific › peer-review
Extensive research over the past decades has identified integrins to be the primary transmembrane receptors that enable cells to respond to external mechanical cues. We reveal here a mechanism whereby syndecan-4 tunes cell mechanics in response to localized tension via a coordinated mechanochemical signalling response that involves activation of two other receptors: epidermal growth factor receptor and β1 integrin. Tension on syndecan-4 induces cell-wide activation of the kindlin-2/β1 integrin/RhoA axis in a PI3K-dependent manner. Furthermore, syndecan-4-mediated tension at the cell–extracellular matrix interface is required for yes-associated protein activation. Extracellular tension on syndecan-4 triggers a conformational change in the cytoplasmic domain, the variable region of which is indispensable for the mechanical adaptation to force, facilitating the assembly of a syndecan-4/α-actinin/F-actin molecular scaffold at the bead adhesion. This mechanotransduction pathway for syndecan-4 should have immediate implications for the broader field of mechanobiology.
EXT="Rog, Tomasz"
INT=bmte,"Mykuliak, Vasyl V."
INT=bmte,"Hytonen, Vesa P."
dupl=51711393
Research output: Contribution to journal › Article › Scientific › peer-review
Switchavidin is a chicken avidin mutant displaying reversible binding to biotin, an improved binding affinity toward conjugated biotin, and low nonspecific binding due to reduced surface charge. These properties make switchavidin an optimal tool in biosensor applications for the reversible immobilization of biotinylated proteins on biotinylated sensor surfaces. Furthermore, switchavidin opens novel possibilities for patterning, purification, and labeling. (Graph Presented).
Research output: Contribution to journal › Article › Scientific › peer-review
We report on phenol-pyridine hydrogen-bonded supramolecular polymer-azobenzene complexes made from a newly designed polar bisazobenzene chromophore. Because of the substitution with a polar nitro group, the chromophore possesses an extremely broad absorption band, spanning from near-UV up to 650 nm. Moreover, the inclusion of two methoxy groups to the central benzene ring prevents excessive chromophore-chromophore intermolecular interactions and provides advantageous size-related properties. Together, these features of the prepared photoresponsive polymer materials enable efficient inscription of (i) photoinduced birefringence with outstanding stability at various chromophore concentrations and (ii) surface-relief grating formation over a wide range of writing wavelengths from 405 to 633 nm. The photoresponsive behavior is compared to that of Disperse Yellow 7-based supramolecular complexes.
Research output: Contribution to journal › Article › Scientific › peer-review
Surface relaxation of the stoichiometric and reduced SnO2 (110) surfaces is studied with first-principles calculations. Calculations are carried out with two different self-consistent ab initio LDA methods, which lead to similar results. The most prominent feature in the relaxation is that the surface layer oxygens of the reduced surface move outwards about 0.4Å with respect to the surface tin atoms. The stoichiometric (oxidized) surface is stabilized by the "bridging" oxygen atoms, and therefore, relaxes less. The valence band density-of-states is similar at both surfaces, except that removing bridging oxygens leaves behind electrons that occupy gap states formed at the reduced tin atoms.
Research output: Contribution to journal › Article › Scientific › peer-review
Atomic geometry and electronic density of states of the wurtzite CdS (1010) cleavage surface have been calculated. Calculations were carried out with two different self-consistent ab initio LDA methods leading to similar results. Surface relaxation is found to be strong: cations relax towards bulk and anions outwards from the surface. This is in accordance with experimental observations and other published calculations.
Research output: Contribution to journal › Article › Scientific › peer-review
Surface properties and electrical charges are critical factors elucidating cell interactions on biomaterial surfaces. The surface potential distribution and the nanoscopic and microscopic surface elasticity of organic polypyrrole-hyaluronic acid (PPy-HA) were studied by atomic force microscopy (AFM) in a fluid environment in order to explain the observed enhancement in the attachment of human adipose stem cells on positively charged PPy-HA films. The electrostatic force between the AFM tip and a charged PPy-HA surface, the tip-sample adhesion force, and elastic moduli were estimated from the AFM force curves, and the data were fitted to electrostatic double-layer and elastic contact models. The surface potential of the charged and dried PPy-HA films was assessed with Kelvin probe force microscopy (KPFM), and the KPFM data were correlated to the fluid AFM data. The surface charge distribution and elasticity were both found to correlate well with the nodular morphology of PPy-HA and to be sensitive to the electrochemical charging conditions. Furthermore, a significant change in the adhesion was detected when the surface was electrochemically charged positive. The results highlight the potential of positively charged PPy-HA as a coating material to enhance the stem cell response in tissue-engineering scaffolds.
Research output: Contribution to journal › Article › Scientific › peer-review
Through the combination of surface sensitive photoelectron spectroscopy and molecular dynamics simulation, the relative surface propensities of guanidinium and ammonium ions in aqueous solution are characterized. The fact that the N 1s binding energies differ between these two species was exploited to monitor their relative surface concentration through their respective photoemission intensities. Aqueous solutions of ammonium and guanidinium chloride, and mixtures of these salts, have been studied in a wide concentration range, and it is found that the guanidinium ion has a greater propensity to reside at the aqueous surface than the ammonium ion. A large portion of the relative excess of guanidinium ions in the surface region of the mixed solutions can be explained by replacement of ammonium ions by guanidinium ions in the surface region in combination with a strong salting-out effect of guanidinium by ammonium ions at increased concentrations. This interpretation is supported by molecular dynamics simulations, which reproduce the experimental trends very well. The simulations suggest that the relatively higher surface propensity of guanidinium compared with ammonium ions is due to the ease of dehydration of the faces of the almost planar guanidinium ion, which allows it to approach the water-vapor interface oriented parallel to it.
Research output: Contribution to journal › Article › Scientific › peer-review
Halogen bonding, a noncovalent interaction possessing several unique features compared to the more familiar hydrogen bonding, is emerging as a powerful tool in functional materials design. Herein, we unambiguously show that one of these characteristic features, namely high directionality, renders halogen bonding the interaction of choice when developing azobenzene-containing supramolecular polymers for light-induced surface patterning. The study is conducted by using an extensive library of azobenzene molecules that differ only in terms of the bond-donor unit. We introduce a new tetrafluorophenol-containing azobenzene photoswitch capable of forming strong hydrogen bonds, and show that an iodoethynyl-containing azobenzene comes out on top of the supramolecular hierarchy to provide unprecedented photoinduced surface patterning efficiency. Specifically, the iodoethynyl motif seems highly promising in future development of polymeric optical and photoactive materials driven by halogen bonding.
EXT="Saccone, Marco"
EXT="Vapaavuori, Jaana"
Research output: Contribution to journal › Article › Scientific › peer-review
Noncovalent binding of azobenzenes to polymers allows harnessing light-induced molecular-level motions (photoisomerization) for inducing macroscopic effects, including photocontrol over molecular alignment and self-assembly of block copolymer nanostructures, and photoinduced surface patterning of polymeric thin films. In the last 10 years, a growing body of literature has proven the utility of supramolecular materials design for establishing structure-property-function guidelines for photoresponsive azobenzene-based polymeric materials. In general, the bond type and strength, engineered by the choice of the polymer and the azobenzene, influence the photophysical properties and the optical response of the material system. Herein, we review this progress, and critically assess the advantages and disadvantages of the three most commonly used supramolecular design strategies: hydrogen, halogen and ionic bonding. The ease and versatility of the design of these photoresponsive materials makes a compelling case for a paradigm shift from covalently-functionalized side-chain polymers to supramolecular polymer-azobenzene complexes.
Research output: Contribution to journal › Review Article › Scientific › peer-review
Introducing photochromic or polymeric dopants into nematic liquid crystals is a well-established method to create stimuli-responsive photonic materials with the ability to "control light with light". Herein, we demonstrate a new material design concept by showing that specific supramolecular interactions between the host liquid crystal and the guest dopants enhance the optical performance of the doped liquid crystals. By varying the type and strength of the dopant-host interaction, the phase-transition temperature, the order parameter of the guest molecules, and the diffraction signal in response to interference irradiation, can be accurately engineered. Our concept points out the potential of supramolecular interactions in liquid-crystal photonics, being valuable for optimizing the design of dye-doped functional liquid-crystalline systems.
Research output: Contribution to journal › Article › Scientific › peer-review
The influence of gold nanoparticles (diameter of about 2.5 nm) on the complex between the SYBRGreen dye and double-stranded DNA in solutions has been investigated by fluorescence spectroscopy. Strong quenching of dye fluorescence by nanosized gold particles ("superquenching"), characterized by a high Stern-Volmer constant of KSV = 3.3 × 107 L/mol, has been found. The superquenching effect in the test system is explained in terms of contribution of several processes: electron transfer, formation of aggregates of gold nanoparticles involving dye dications, and enhancement of intersystem crossing by a heavy atom (gold atoms of nanoparticles).
Research output: Contribution to journal › Article › Scientific › peer-review
Unconventional ionic liquid crystals in which the liquid crystallinity is enabled by halogen-bonded supramolecular anions [CnF2n+1-I···I···I-CnF2n+1]- are reported. The material system is unique in many ways, demonstrating for the first time 1)ionic, halogen-bonded liquid crystals, and 2)imidazolium-based ionic liquid crystals in which the occurrence of liquid crystallinity is not driven by the alkyl chains of the cation.
Research output: Contribution to journal › Article › Scientific › peer-review
Supercritical carbon dioxide (scCO2) treatment was employed for rapid formation of a zinc patina layer on hot dip galvanized (HDG) steel. In the presence of H2O and a Cu precursor, an artificial patina consisting of two distinctive phases was formed: a dense ~ 1 μm layer of anhydrous ZnCO3 adjacent to native zinc coating, and a needle-like porous structure showing resemblance to hydrozincite (Zn5(CO3)2(OH)6). The artificial patina layer significantly decreased the surface free energy of HDG, which was evidenced also by good wettability by a polyester melamine coating. Furthermore, the needle-like patina surface structure stayed intact through the coating process, indicating improved coating adhesion. ScCO2 treatment facilitates rapid and impurity-free surface treatment of hot dip galvanized steel, and could be used to tailor novel adhesion and corrosion promoting surface morphologies.
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
Sulfonated polyetheretherketone (SPEEK) was synthesized via a mono-substitution reaction of PEEK in concentrated sulphuric acid and was blended with polypropylene (PP) in 2-10%w/w concentration to be used for the production of photoactive thermoplastic products. SPEEK and SPEEK/PP blends were characterized using FTIR, DSC, TGA, NMR, rheology, SEM, and EPR. Under UV-Vis irradiation, stable benzophenone ketyl (BPK) radicals were generated by hydrogen extraction from PP. By increasing the amount of SPEEK in the polymer blend a linear increase in the BPK radicals was achieved according to the EPR data. DSC and TGA tests indicated weaknesses in the thermal stability of SPEEK but according to the rheological tests this should not have a major effect on processabililty. The optimal amount of SPEEK in the blend was obtained at 5%w/w. This concentration provided a good compromise between radical concentration, material processability, and cost.
Article first published online: 1 OCT 2014 ;(Volume 132, Issue 8, February 20, 2015)<br/>Contribution: organisation=mol,FACT1=1<br/>Portfolio EDEND: 2014-12-30<br/>Publisher name: JohnWiley & Sons, Inc.
Research output: Contribution to journal › Article › Scientific › peer-review
We demonstrate experimentally for the first time that the illumination of azobenzene derivatives leads to changes in molecular environment similar to those observed on heating but that are highly heterogeneous at the submolecular scale. This localized photoplasticization, which can be associated with a free volume gradient, helps to understand the puzzling phenomenon of photoinduced macroscopic material flow and photoexpansion upon illumination far below the glass transition temperature (Tg). The findings stem from the correlation of infrared (IR) spectral band shifts measured upon illumination with those measured at controlled temperatures for two amorphous DR1-functionalized azo derivatives, a polymer, pDR1A, and a molecular glass, gDR1. This new approach reveals that IR spectroscopy can be used as an efficient label-free molecular-scale thermometer that allows the assignment of an effective temperature (Teff) to each moiety in these compounds when irradiated. While no band shift is observed upon illumination for the vibrational modes assigned to backbone moieties of pDR1A and gDR1 and a small band shift is found for the spacer moiety, dramatic band shifts are recorded for the azo moiety, corresponding to an increase in Teff of up to nearly 200 °C and a molecular environment that is equivalent to thermal heating well above the bulk Tg of the material. An irradiated azo-containing material thus combines characteristic properties of amorphous materials both below and above its bulk Tg. The direct measurement of Teff is a powerful probe of the local environment at the submolecular scale, paving the way toward better rationalization of photoexpansion and the athermal malleability of azo-containing materials upon illumination below their Tg.
Research output: Contribution to journal › Article › Scientific › peer-review
Microwave annealing is an emerging technique for achieving ordered patterns of block copolymer films on substrates. Little is understood about the mechanisms of microphase separation during the microwave annealing process and how it promotes the microphase separation of the blocks. Here, we use controlled power microwave irradiation in the presence of tetrahydrofuran (THF) solvent, to achieve lateral microphase separation in high-χ lamellar-forming poly(styrene-b-lactic acid) PS-b-PLA. A highly ordered line pattern was formed within seconds on silicon, germanium and silicon on insulator (SOI) substrates. In-situ temperature measurement of the silicon substrate coupled to condition changes during "solvomicrowave" annealing allowed understanding of the processes to be attained. Our results suggest that the substrate has little effect on the ordering process and is essentially microwave transparent but rather, it is direct heating of the polar THF molecules that causes microphase separation. It is postulated that the rapid interaction of THF with microwaves and the resultant temperature increase to 55 °C within seconds causes an increase of the vapor pressure of the solvent from 19.8 to 70 kPa. This enriched vapor environment increases the plasticity of both PS and PLA chains and leads to the fast self-assembly kinetics. Comparing the patterns formed on silicon, germanium and silicon on insulator (SOI) and also an in situ temperature measurement of silicon in the oven confirms the significance of the solvent over the role of substrate heating during "solvo-microwave" annealing. Besides the short annealing time which has technological importance, the coherence length is on a micron scale and dewetting is not observed after annealing. The etched pattern (PLA was removed by an Ar/O2 reactive ion etch) was transferred to the underlying silicon substrate fabricating sub-20 nm silicon nanowires over large areas demonstrating that the morphology is consistent both across and through the film.
Research output: Contribution to journal › Article › Scientific › peer-review
Understanding the properties of hydrated electrons, which were first observed using pulse radiolysis of water in 1962, is crucial because they are key species in many radiation chemistry processes. Although time-resolved spectroscopic studies and molecular simulations have shown that an electron in water (prepared, for example, by water photoionization) relaxes quickly to a localized, cavity-like structure ∼2.5 Å in radius, this picture has recently been questioned. In another experimental approach, negatively charged water clusters of increasing size were studied with photoelectron and IR spectroscopies. Although small water clusters can bind an excess electron, their character is very different from bulk hydrated species. As data on electron binding in liquid water have become directly accessible experimentally, the cluster-to-bulk extrapolations have become a topic of lively debate. Quantum electronic structure calculations addressing experimental measurables have, until recently, been largely limited to small clusters; extended systems were approached mainly with pseudopotential calculations combining a classical description of water with a quantum mechanical treatment of the excess electron.In this Account, we discuss our investigations of electrons solvated in water by means of ab initio molecular dynamics simulations. This approach, applied to a model system of a negatively charged cluster of 32 water molecules, allows us to characterize structural, dynamical, and reactive aspects of the hydrated electron using all of the system's valence electrons. We show that under ambient conditions, the electron localizes into a cavity close to the surface of the liquid cluster. This cavity is, however, more flexible and accessible to water molecules than an analogous area around negatively charged ions.The dynamical process of electron attachment to a neutral water cluster is strongly temperature dependent. Under ambient conditions, the electron relaxes in the liquid cluster and becomes indistinguishable from an equilibrated, solvated electron on a picosecond time scale. In contrast, for solid, cryogenic systems, the electron only partially localizes outside of the cluster, being trapped in a metastable, weakly bound "cushion-like" state. Strongly bound states under cryogenic conditions could only be prepared by cooling equilibrated, liquid, negatively charged clusters. These calculations allow us to rationalize how different isomers of electrons in cryogenic clusters can be observed experimentally. Our results also bring into question the direct extrapolation of properties of cryogenic, negatively charged water clusters to those of electrons in the bulk liquid.Ab initio molecular dynamics represents a unique computational tool for investigating the reactivity of the solvated electron in water. As a prototype, the electron-proton reaction was followed in the 32-water cluster. In accord with experiment, the molecular mechanism is a proton transfer process that is not diffusion limited, but rather controlled by a proton-induced deformation of the excess electron's solvent shell. We demonstrate the necessary ingredients of a successful density functional methodology for the hydrated electron that avoids potential pitfalls, such as self-interaction error, insufficient basis set, or lack of dispersion interactions. We also benchmark the density functional theory methods and outline the path to faithful ab initio simulations of dynamics and reactivity of electrons solvated in extended aqueous systems.
Research output: Contribution to journal › Article › Scientific › peer-review
Light-responsive supramolecular self-assemblies exhibit interplay between order and dynamics of the self-assembling motifs, through which the thermal isomerization rate of azobenzene chromophores can be tuned by orders of magnitude. By using supramolecular complexes of 4-(4-alkylphenylazo)phenols hydrogen-bonded to poly(4-vinylpyridine) as model systems, we demonstrate that the thermal isomerization rate of the hydroxyazobenzene derivatives increases 5700-fold when the material undergoes a transformation from a disordered, low-azobenzene-concentration state to a high-concentration state exhibiting lamellar, smectic-like self-assembly. Drastically smaller thermal isomerization rates are observed in disordered structures. This allows us to attribute the change to a combination of increased number density of the hydroxyazobenzenes inducing plasticization, and cooperativity created by the chromophore-chromophore interactions through self-assembled molecular order and alignment. Our results pinpoint the importance of molecular self-assembly and intermolecular interactions in modifying the dynamics in supramolecular complexes in a controlled manner. We foresee this to be important in light-controlled dynamic materials.
Research output: Contribution to journal › Article › Scientific › peer-review
In this paper we define the structural information content of graphs as their corresponding graph entropy. This definition is based on local vertex functionals obtained by calculating j-spheres via the algorithm of Dijkstra. We prove that the graph entropy and, hence, the local vertex functionals can be computed with polynomial time complexity enabling the application of our measure for large graphs. In this paper we present numerical results for the graph entropy of chemical graphs and discuss resulting properties.
Research output: Contribution to journal › Article › Scientific › peer-review
A high performance elastomeric flame retardant nanocomposite was prepared which was based on maleic anhydride grafted ethylene-propylene-diene terpolymer (mEPDM), a one-step synthesised organo-layered double hydroxide (LDH), and an intumescent flame retardant (FR) comprised of pentaerythritol (PER), ammonium polyphosphate (APP) and methyl cyanoacetate (MCA). The morphology, fire behavior and mechanical properties of the flame-retarded mEPDM/LDH nanocomposite have been studied in detail. Wide angle X-ray scattering (WAXS), small angle X-ray scattering (SAXS) and TEM observation confirmed an exfoliated structure of LDH in a particular composite containing 2 phr (parts per hundred) LDH and 38 phr FR. As an effective flame retardant synergistic agent, MgAl-LDH shows a significant decrease in the heat release rate (HRR), low mass loss (ML) and low fire growth rate (FIGRA) of the nanocomposite. The flame retardant mechanism has been proposed, which is mainly due to the condensed phase flame retardant mechanism to form reinforced char layers during combustion, leading to the low volatiles produced. Moreover, as far as the mechanical properties of the vulcanizates are concerned, in all cases of flame retardant mEPDM and flame retarded mEPDM/LDH nanocomposites, they exhibit superior values compared to the gum compound.
Research output: Contribution to journal › Article › Scientific › peer-review
Actin polymerization powers key cellular processes, including motility, morphogenesis, and endocytosis. The actin turnover cycle depends critically on "re-charging" of ADP-Actin monomers with ATP, but whether this reaction requires dedicated proteins in cells, and the underlying mechanism, have remained elusive. Here we report that nucleotide exchange catalyzed by the ubiquitous cytoskeletal regulator cyclase-Associated protein (CAP) is critical for actin-based processes in vivo. We determine the structure of the CAP-Actin complex, which reveals that nucleotide exchange occurs in a compact, sandwich-like complex formed between the dimeric actin-binding domain of CAP and two ADP-Actin monomers. In the crystal structure, the C-Terminal tail of CAP associates with the nucleotide-sensing region of actin, and this interaction is required for rapid re-charging of actin by both yeast and mammalian CAPs. These data uncover the conserved structural basis and biological role of protein-catalyzed re-charging of actin monomers.
Research output: Contribution to journal › Article › Scientific › peer-review
Particle emissions and secondary aerosol formation from internal combustion engines deteriorate air quality and significantly affect human wellbeing and health. Both the direct particle emissions and the emissions of compounds contributing to secondary aerosol formation depend on choices made in selecting fuels, engine technologies, and exhaust aftertreatment (EAT). Here we study how catalytic EATs, particle filtration, and fuel choices affect these emissions concerning heavy-duty diesel engine. We observed that the most advanced EAT decreased the emissions of fresh exhaust particle mass as much as 98% (from 44.7 to 0.73 mg/kWh) and the formation of aged exhaust particle mass ∼100% (from 106.2 to ∼0 mg/kWh). The composition of emitted particles depended significantly on the EAT and oxidative aging. While black carbon typically dominated the composition of fresh exhaust particles, aged particles contained more sulfates and organics. The fuel choices had minor effects on the secondary aerosol formation, implicating that, in diesel engines, either the lubricant is a significant source of secondary aerosol precursors or the precursors are formed in the combustion process. Results indicate that the utilization of EAT in diesel engines would produce benefits with respect to exhaust burden on air quality, and thus their utilization should be promoted especially in geographical areas suffering from poor air quality.
EXT="Happonen, Matti"
Research output: Contribution to journal › Article › Scientific › peer-review
In this paper, methods to produce rapid strain rate changes for strain rate sensitivity measurements in Split Hopkinson Bar arrangements are presented and discussed. Two different cases are considered: a strain rate change test within the high strain rate region in compression, and a tension test incorporating a large strain rate jump directly from the low strain rate region to high strain rates. The former method is based on the loading wave amplitude manipulation, while the latter method is based on the incorporation of a low strain rate loading device into a Tensile Split Hopkinson Bar apparatus.
Research output: Contribution to journal › Article › Scientific › peer-review
This feature article focuses on the highlights in the development of photonic polymer coatings that can change their volume or surface topology in a reversible, dynamic fashion when exposed to an external stimulus. Topographic response is established using hydrogels or liquid crystal polymer networks. By changing the surface corrugation in response to light various functional coating properties can be modulated, for instance wettability and/or mechanical friction. The same volume changes in photonic coatings caused by different stimuli lead to changes in light reflection.
EXT="Stumpel, Jelle"
Research output: Contribution to journal › Review Article › Scientific › peer-review
Stimuli-responsive materials based on interpenetrating liquid crystal-hydrogel polymer networks are fabricated. These materials consist of a cholesteric liquid crystalline network that reflects color and an interwoven poly(acrylic acid) network that provides a humidity and pH response. The volume change in the cross-linked hydrogel polymer results in a dimensional alteration in the cholesteric network as well, which, in turn, leads to a color change yielding a dual-responsive photonic material. Furthermore a patterned coating having responsive and static interpenetrating polymer network areas is produced that changes both its surface topography and color.
Research output: Contribution to journal › Article › Scientific › peer-review
Clathrate hydrates with polar guest molecules (dimethyl ether, ethylene oxide, trimethylene oxide, tetrahydrofuran, and tetrahydropyran) were studied by means of the density functional theory. A model of a large cage of structure-I clathrate was employed. Optimal configurations of encaged guests were investigated with a focus on the host-guest hydrogen bond formation. Weak hydrogen bonds were found to be formed by each guest, while for THP a strong hydrogen bond and formation of L-defect was also observed. This is in accord with previous computational and experimental studies. Steric factors were shown to play a key role for the strength of the hydrogen bond formed. Interestingly, the host-guest binding is influenced not only by the size of a guest molecule but also by its shape. This work demonstrates that both electronic and steric properties of a polar guest should be considered for a full description of clathrate systems.
Research output: Contribution to journal › Article › Scientific › peer-review
The testing of water vapor transmission rates (WVTR) for extrusion-coated papers can be a time-consuming task for laboratories. This study introduces a prediction model that provides an effective and helpful option to laboratory measurements. In practice, the WVTR of an extrusion-coated paper is affected by three main factors: coating weight (or squared mass) of the polymer concerned, the temperature and moisture content of the immediate surroundings. The prediction model determines mathematical connections between the WVTR and these variables covering the detected region of experimental WVTR results with a continuous estimation. By using mixing ratio as a variable of humidity, the model was found to provide accurate estimation across the field of experiments. As a result of this study, a practical computer program, which predicts the WVTR of a multilayer extrusion-coated paper as a function of user-defined temperature and relative humidity values and the layer structure of the coating, was developed. APPLICATION STATEMENT: This work shows how WVTR of a multilayer extrusion-coated paper can be estimated with the help of a statistical prediction model.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Barkhausen noise testing (BNT) is a nondestructive method for investigating many properties of ferromagnetic materials. The most common application is the monitoring of grinding burns caused by introducing locally high temperatures while grinding. Other features, such as microstructure, residual stress changes, hardening depth, and so forth, can be monitored as well. Nevertheless, because BNT is a method based on a complex magnetoelectric phenomenon, it is not yet standardized. Therefore, there is a need to study the traceability and stability of the measurement method. This study aimed to carry out a statistical analysis of ferromagnetic samples after grinding processes by the use of BNT. The first part of the experiment was to grind samples in different facilities (Sweden and Finland) with similar grinding parameters, different grinding wheels, and different hardness values. The second part was to evaluate measured BNT parameters to determine significant factors affecting BNT signal value. The measurement data from the samples were divided into two different batches according to where they were manufactured. Both grinding batches contained measurement data from three different participants. The main feature for calculation was the root-mean-square (RMS) value. The first processing step was to normalize the RMS values for all the measurements. A standard analysis of variance (ANOVA) was applied for the normalized dataset. The ANOVA showed that the grinding parameters had a significant impact on the BNT signal value, while the other investigated factors (e.g., participant) were negligible. The reasons for this are discussed at the end of the paper.
Research output: Contribution to journal › Article › Scientific › peer-review
Thermophilic anaerobic treatment of hot vegetable processing wastewaters was studied in laboratory-scale UASB reactors at 55°C. The high-strength wastewater streams, deriving from steam peeling and blanching of carrot, potato and swede were used. The reactors were inoculated with mesophilic granular sludge. Stable thermophilic methanogenesis with about 60% COD removal was reached within 28 days. During the 134 day study period the loading rate was increased up to 24 kg COD m-3 day-1. High treatment efficiency of more than 90% COD removal and concomitant methane production of 7.3 m3 CH4 m-3 day-1 were achieved. The anaerobic process performance was not affected by the changes in the wastewater due to the different processed vegetables. The results demonstrated the feasibility of thermophilic anaerobic treatment of vegetable processing wastewaters in UASB reactors.
Contribution: organisation=bio,FACT1=1
Research output: Contribution to journal › Article › Scientific › peer-review
Starch and poly(vinyl alcohol) based barrier coatings for flexible packaging papers were studied. Both octenyl succinate modified and hydroxypropylated corn and potato starches were blended with regular and ethylene modified poly(vinyl alcohol) to increase the water vapor barrier properties and enhance the flexibility of the starch coatings, in order to accomplish superior barrier performance. Phase separation between starch and poly(vinyl alcohol) was studied in detail, both in the solution and in dry draw-down coatings on paper. The barrier performance of the coated paper was evaluated with respect to water vapor transmission rate. Conditions for the creation of a thin surface layer consisting of only one of the pure polymers were identified and discussed in terms of phase separation in solution migration of poly(vinyl alcohol) to the uppermost surface layer. The phase separation promoted low water vapor transmission rates also with a rather high fraction of starch in the coatings.
Research output: Contribution to journal › Article › Scientific › peer-review
We studied natural and forestry-drained peatlands to examine the effect of over 34 years lowered water table on the δ13C values of vegetation, bulk peat and subsoil. In the seven studied sites, δ13C in the basal peat layer was 1.1 and 1.2 ‰ lower than that of the middle-layer and surface layer, respectively. Furthermore, there was a positive correlation between the δ13C values of the basal and surface peat layers, possibly due to carbon (C) recycling within the peat column. In the same mire complex, natural fen peat δ13C values were lower than those of the nearby bog, possibly due to the dominance of vascular plants on fen and the generally larger share of recycled C in the fens than in the bogs. Furthermore, natural and 51 years previously drained fen and bog, on the opposite sides of a ditch on the same mire complex, showed no significant differences in δ13C values. Plant δ13C values were lower, while δ13C values of subsoil were higher in the drained than in the natural site of the fen.
Research output: Contribution to journal › Article › Scientific › peer-review
Comparing homologous enzymes adapted to different thermal environments AIDS to shed light on their delicate stability/function trade-off. Protein mechanical rigidity was postulated to secure stability and high-temperature functionality of thermophilic proteins. In this work, we challenge the corresponding-state principle for a pair of homologous GTPase domains by performing extensive molecular dynamics simulations, applying conformational and kinetic clustering, as well as exploiting an enhanced sampling technique (REST2). While it was formerly shown that enhanced protein flexibility and high temperature stability can coexist in the apo hyperthermophilic variant, here we focus on the holo states of both homologues by mimicking the enzymatic turnover. We clearly show that the presence of the ligands affects the conformational landscape visited by the proteins, and that the corresponding state principle applies for some functional modes. Namely, in the hyperthermophilic species, the flexibility of the effector region ensuring long-range communication and of the P-loop modulating ligand binding are recovered only at high temperature.
Research output: Contribution to journal › Article › Scientific › peer-review
In this work, we report on the spontaneous formation of ordered arrays of nanometer-sized Bi-rich structures due to lateral composition modulations in Ga(As,Bi)/GaAs quantum wells grown by molecular beam epitaxy. The overall microstructure and chemical distribution is investigated using transmission electron microscopy. The information is complemented by synchrotron x-ray grazing incidence diffraction, which provides insight into the in-plane arrangement. Due to the vertical inheritance of the lateral modulation, the Bi-rich nanostructures eventually shape into a three-dimensional assembly. Whereas the Bi-rich nanostructures are created via two-dimensional phase separation at the growing surface, our results suggest that the process is assisted by Bi segregation which is demonstrated to be strong and more complex than expected, implying both lateral and vertical (surface segregation) mass transport. As demonstrated here, the inherent thermodynamic miscibility gap of Ga(As,Bi) alloys can be exploited to create highly uniform Bi-rich units embedded in a quantum confinement structure.
EXT="Wu, M."
Research output: Contribution to journal › Article › Scientific › peer-review
The use of industrial by-products as substitute to conventional natural resources in ceramic production is of interest from an environment preservation and solid wastes management. This paper deals with the recycling of tailings from spodumene concentration during lithium production (Quartz Feldspar Sand; QFS), for the production of porcelain and structural materials. The QFS obtained from spodumene processing consisted mainly of quartz, albite, microcline with traces of muscovite. Mixtures of QFS and standard porcelain ingredients were sintered at 1050–1200 °C at 50 °C intervals and their properties were compared with a conventional porcelain composition prepared under the same conditions. Phase composition was assessed by XRD analysis using Rietveld refinement. Tests such as water absorption, apparent density, sintering shrinkage, compressive and flexural strength were used for physical comparison. The results showed that higher densification was achieved at 1200 °C, with a drastic reduction of water absorption below 1%. A compressive strength of 40 MPa was obtained at 1050 °C in the composition made of 50 wt% QFS and 50 wt% kaolin, increasing to 85 MPa at 1100 °C. The strength increase was attributed to better glassy phase formation and mullite growth. The QFS was found to contain no hazardous elements and showed promising sintering results, indicating its high suitability to substitute conventional resources in the production of ceramic materials.
Research output: Contribution to journal › Article › Scientific › peer-review
Silicene is a graphene-like material with relatively strong spin-orbit coupling exhibiting gapless topologically protected edge states. In addition, it has a buckled structure, and hence, it stands as a feasible candidate for spintronic applications, where spin-polarized channels could be controlled with external electric fields realized with voltage gates attached to a Silicene sheet. Breaking the periodicity in 2D-materials with spin-orbit coupling produces one-dimensional edge and interface nanostructures that may give rise to an intrinsic locking of spin-polarization to electron momentum. We consider field induced and chemical ways to create interfaces to give way to spin polarized states for both zigzag and armchair alignments. While the spin polarization of a field induced interface channel can be feasibly tuned, a chemical interface is less flexibly tunable. However, controlling Fermi-level, e.g. with a gate voltage, might serve as a spin valve along the interface.
Research output: Contribution to journal › Article › Scientific › peer-review
We used a combination of synchrotron-based X-ray photoelectron spectroscopy (XPS) and angle-resolved near-edge X-ray absorption fine structure (NEXAFS) spectroscopy to study the chemical integrity, purity, and possible internal alignment of single-strand (ss) adenine deoxynucleotide (poly(A)) DNA brushes. The brushes were synthesized by surface-initiated enzymatic polymerization (SIEP) on a 25-mer of adenine self-assembled monolayer (SAM) on gold (A25-SH), wherein the terminal 3′-OH of the A25-SH serve as the initiation sites for SIEP of poly(A). XPS and NEXAFS spectra of poly(A) brushes were found to be almost identical to those of A25-SH initiator, with no unambiguous traces of contamination. Apart from the well-defined chemical integrity and contamination-free character, the brushes were found to have a high degree of orientational order, with an upright orientation of individual strands, despite their large thickness up to ∼55 nm, that corresponds to a chain length of at least several hundred nucleotides for individual ssDNA molecules. The orientational order exhibited by these poly(A) DNA brushes, mediated presumably by base stacking, was found to be independent of the brush thickness as long as the packing density was high enough. The well-defined character and orientational ordering of the ssDNA brushes make them a potentially promising system for different applications.
Research output: Contribution to journal › Article › Scientific › peer-review
In this paper, we have applied a recently developed complex-domain hyperspectral denoiser for the object recognition task, which is performed by the correlation analysis of investigated objects’ spectra with the fingerprint spectra from the same object. Extensive experiments carried out on noisy data from digital hyperspectral holography demonstrate a significant enhancement of the recognition accuracy of signals masked by noise, when the advanced noise suppression is applied.
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
Sorption of ethylene glycol monoethyl ether (EGME) was studied gravimetrically and correlated with the results of retention experiments where samples wetted with EGME were evacuated. If a sorption measurement is done conventionally by increasing the vapor pressure slowly by small steps, molecules are packed smoothly along the surface, and a fairly flat isotherm is obtained. If the sample is directly exposed to a high vapor pressure or the normal sorption mode is disturbed by directly reducing the pressure, more EGME is sorbed. Then some of the molecules may be fixed only at their hydroxy ends. The evacuation curves are best interpreted in a semilogarithmic form, by which the value of the monolayer capacity can be estimated. EGME can be used for surface area measurements of silicas, but with porous samples areas that are too large are probably obtained. When EGME is packed smoothly on standard silica TK 800, one molecule occupies an area of 0.44 nm2, computed by the BET equation with three parameters, or 1 mg of EGME covers 3.0 m2.
Research output: Contribution to journal › Article › Scientific › peer-review
We assessed the relative merits of two approaches for including polarization effects in classical force fields for the sulfate anion. One of the approaches is the explicit shell model for atomic polarization and the other is an implicit dielectric continuum representation of the electronic polarization, wherein the polarizability density is spatially uniform. Both the solvation and ion association properties of sulfate were considered. We carried out an ab initio molecular dynamics simulation for a single sulfate anion in aqueous solution to obtain a benchmark for the solvation structure. For the ion-pairing properties, the models were compared to experimental thermodynamic data through Kirkwood-Buff theory, which relates the integrals of the pair correlation functions to measurable properties. While deficiencies were found for both of the approaches, the continuum polarization model was not systematically worse than the shell model. The shell model was found to give a more structured solution than the continuum polarization model, both with respect to solvation and ion pairing.
Research output: Contribution to journal › Article › Scientific › peer-review
As part of an ongoing lead discovery project we have developed a convenient method for the modification and substitution of indole moieties at the 3-position. Selective bromination of three different 2-carboxyindoles was followed by Suzuki cross-coupling with aryl and heteroaryl boronic acids on a Merrifield resin solid-phase. After column chromatography, yields of the 3- substituted indoles ranged from 42-98%.
Research output: Contribution to journal › Article › Scientific › peer-review
Regenerative medicine, especially cell therapy combined with a supportive biomaterial scaffold, is considered to be a potential treatment for various deficits in humans. Here, we have produced and investigated the detailed properties of injectable hydrazone crosslinked hyaluronan-polyvinyl alcohol (HA-PVA) and alginate-polyvinyl alcohol (AL-PVA) hydrogels to be used as a supportive biomaterial for 3D neural cell cultures. To the best of our knowledge, this is the first time the polymerization and properties of hydrazone crosslinked AL-PVA hydrogel have been reported. The effect of the degree of substitution and molecular weight of the polymer components as well as the polymer concentration of the hydrogel on the swelling, degradation and mechanical properties of the hydrogels is reported. Furthermore, we studied the effect of the above parameters on the growth of human pluripotent stem cell-derived neuronal cells. The most neural cell supportive HA-PVA hydrogel was composed of high molecular weight HA component with brain-mimicking mechanical properties and decreased polymer concentration. AL-PVA hydrogel, with stiffness quite similar to brain tissue, was also shown to be similarly supportive. Neuronal spreading and 3D network formation was enhanced inside the softest hydrogels.
Research output: Contribution to journal › Article › Scientific › peer-review
We report here the fabrication of periodic sub-25 nm diameter size cylinder structures using block copolymer (BCP) directed self-Assembly on nanoimprinted topographically patterned substrates. Tailored polyhedral oligomeric silsesquioxanes (POSSs) films were spin coated onto silicon substrates and were patterned by nanoimprint lithography to produce topographies commensurable with the BCP domain spacing. The chemistry of the POSS was tuned to control the alignment and orientation of the BCP films. The substrates were used to direct the microphase separation (following toluene solvent annealing) of a hexagonal structure forming polystyrene-block-polydimethylsiloxane (PS-b-PDMS) having a domain spacing of 42.6 nm and PDMS cylinder widths of 23.7 nm. On more hydrophilic POSS substrates the cylinders were obtained parallel to the substrate plane and aligned with the topography. In contrast, in more hydrophobic POSS patterns, the cylinders align perpendicular to the substrate plane. The use of these methods for the nanofabrication of vias, nanofluidic devices or interconnect structures of sub-25 nm feature size is discussed.
Research output: Contribution to journal › Article › Scientific › peer-review
Polyhedral oligomeric silsequioxane (POSS) derivatives have been successfully employed as substrates for graphoepitaxial directed self-assembly (DSA) of block copolymers (BCPs). Tailored POSS materials of tuned surface chemistry are subject to nanoimprint lithography (NIL) resulting in topographically patterned substrates with dimensions commensurate with the BCP block length. A cylinder forming polystyrene-block-polydimethylsiloxane (PS-b-PDMS) BCP is synthesized by sequential living anionic polymerization of styrene and hexamethylcyclotrisiloxane. The patterned POSS materials provide a surface chemistry and topography for DSA of this BCP and after solvent annealing the BCP shows well-ordered microphase segregation. The orientation of the PDMS cylinders to the substrate plane could be controlled within the trench walls by the choice of the POSS materials. The BCP patterns are successfully used as on-chip etch mask to transfer the pattern to underlying silicon substrate. This soft graphoepitaxy method shows highly promising results as a means to generate lithographic quality patterns by nonconventional methods and could be applied to both hard and soft substrates. The methodology might have application in several fields including device and interconnect fabrication, nanoimprint lithography stamp production, nanofluidic devices, lab-on-chip, or in other technologies requiring simple nanodimensional patterns. A methodology for fabricating highly ordered silicon nanostructures at a substrate is reported using nanoimprint lithography imprinted polyhedral oligomeric silsequioxane (POSS) substrates for graphoepitaxial directed self-assembly (DSA) of block copolymer (BCP). The patterned POSS materials provide a surface chemistry and topography for DSA of a cylinder forming polystyrene-block-polydimethylsiloxane BCP with well-ordered microphase segregation upon solvent annealing.
Research output: Contribution to journal › Article › Scientific › peer-review
The adsorption of water and ammonia molecules to Nan (n = 7, 18, and 25) clusters was studied using density functional theory calculations. Calculated adsorption energies are small (
Research output: Contribution to journal › Article › Scientific › peer-review
Following the recent work of decomposing the total dipole moment and polarizability of a homogeneous system into site-specific contributions, we extend the study to the heterogeneous systems of iron-doped Sin (n = 1-14) clusters by introducing a weighting function. The structure-/shape- and size-specific aspects of the dipole moments and polarizabilities of Si nFe (n = 1-14) clusters are analyzed and compared with pure silicon clusters. It is shown that the polarizabilities associated with the individual constituent atoms vary considerably with the structure/shape of the cluster and the location of the atom or site within a given structure. For atoms at peripheral sites, the polarizabilities are substantially larger than atoms at the interior sites, and the more peripheral an atom is, the larger is its polarizability. The polarizability of the Fe atom in SinFe clusters decreases as the cluster size increases. This is related to the position of Fe atom in SinFe clusters and indicates significant screening of the interior of the cluster by its surface. The correlation between the anisotropy of the total polarizability and the anisotropy of the cluster shape is also analyzed. Comparing with pure Sin clusters, the polarizabilities of Si atoms are increased after Fe atom doping. The structures are more compact for SinFe than the same sizes of Sin+1 clusters and the polarizabilities of SinFe are smaller than Sin+1 for the sizes of n = 7-14.
Research output: Contribution to journal › Article › Scientific › peer-review
The superatom model of electron-shell closings has been widely used to explain the stability of noble-metal nanoclusters of few nanometers, including thiolate-protected Au and Ag nanoclusters. The presence of core sulfur atoms in silver sulfide (Ag-S) nanoclusters renders them a class of clusters with distinctive properties as compared to typical noble-metal clusters. Here, it is natural to ask whether the superatom model is still applicable for the Ag-S nanoclusters with mixed metal and nonmetal core atoms. To address this question, we applied density functional simulations to analyze a series of Ag-S nanoclusters: Ag14S(SPh)12(PPh3)8, Ag14(SC6H3F2)12(PPh3)8, Ag70S16(SPh)34(PhCO2)4(triphos)4, and [Ag123S35(StBu)50]3+. We observed that superatomic orbitals are still present in the conduction band of these Ag-S clusters where the cluster cores comprise mostly silver atoms. Our Bader charge analysis illustrates that thiolates play a significant role in withdrawing charge (electron density) from the core Ag atoms. The simulated optical absorption properties of the selected Ag-S clusters reflect the substantial band gaps associated with typical molecular orbitals on both sides. Apart from Ag14S(SPh)12(PPh3)8, which has a central sulfur atom in the cluster core, superatomic orbitals of the Ag-S clusters can have contributions for individual transitions in the conduction band.
Research output: Contribution to journal › Article › Scientific › peer-review
The photoabsorption spectra of various isomers of Si10, Si9, Si11 and other silicon clusters are calculated using a tight-binding method. Remarkable similarities between the calculated results and the experimental spectra for mid-sized clusters are noted. It is suggested that the mid-sized clusters are composed of aggregates of smaller clusters.
Research output: Contribution to journal › Article › Scientific › peer-review
The influence of particle shape on plasmonic response and local electric field strength is well-documented in metallic nanoparticles. Morphologies such as rods, plates, and octahedra are readily synthesized and exhibit drastically different extinction spectra than spherical particles. Despite this fact, the influence of composition and shape on the optical properties of plasmonic semiconductor nanocrystals, in which free electrons result from heavy doping, has not been well-studied. Here, we report the first observation of plasmonic resonance in indium-doped cadmium oxide (ICO) nanocrystals, which exhibit the highest quality factors reported for semiconductor nanocrystals. Furthermore, we are able to independently control the shape and free electron concentration in ICO nanocrystals, allowing for the influence of shape on the optical response of a plasmonic semiconductor to be conclusively demonstrated. The highly uniform particles may be self-assembled into ordered single component and binary nanocrystal superlattices, and in thin films, exhibit negative permittivity in the near infrared (NIR) region, validating their use as a new class of tunable low-loss plasmonic building blocks for 3-D optical metamaterials.
EXT="Caglayan, Humeyra"
Research output: Contribution to journal › Article › Scientific › peer-review
Industrial chemical processes are struggling with adverse effects, such as corrosion and deposition, caused by gaseous alkali and heavy metal species. Mitigation of these problems requires novel monitoring concepts that provide information on gas-phase chemistry. However, selective optical online monitoring of the most problematic diatomic and triatomic species is challenging due to overlapping spectral features. In this work, a selective, all-optical, in situ gas-phase monitoring technique for triatomic molecules containing metallic atoms was developed and demonstrated with detection of PbCl2. Sequential collinear photofragmentation and atomic absorption spectroscopy (CPFAAS) enables determination of the triatomic PbCl2 concentration through detection of released Pb atoms after two consecutive photofragmentation processes. Absorption cross-sections of PbCl2, PbCl, and Pb were determined experimentally in a laboratory-scale reactor to enable calibration-free quantitative determination of the precursor molecule concentration in an arbitrary environment. Limit of detection for PbCl2 in the laboratory reactor was determined to be 0.25 ppm. Furthermore, the method was introduced for in situ monitoring of PbCl2 concentration in a 120 MWth power plant using demolition wood as its main fuel. In addition to industrial applications, the method can provide information on chemical reaction kinetics of the intermediate species that can be utilized in reaction simulations.
INT=phys,"Kalmankoski, Kim"
INT=phys,"Sarin, Jaakko K."
Research output: Contribution to journal › Article › Scientific › peer-review
We study the vibrational decoherence dynamics of an iodine molecule in a finite krypton cluster comprising the first solvation shell. A normal mode analysis allows us to successively increase the complexity of the description. For the ground state dynamics, comparison with experimental matrix results shows that already four degrees of freedom are sufficient to capture the main decoherence mechanism. For electronically excited iodine, we model the vibrational dynamics of initial Schrödinger cat-like states by the semiclassical hybrid dynamics [ Grossmann, F.J. Chem. Phys. 2006, 125, 014111 ] and full quantum calculations, where available. Good agreement of the results is found for a reduced model with three degrees of freedom. We find non-Gaussian distortions of the bath density matrix, which is a necessary condition, if Schrödinger catlike states in the bath are to be identified. However, in contrast to the experiment [ Segale, D.; et al. J. Chem. Phys. 2005, 122, 111104 ], we observe only incoherent superpositions of bath vibrational states.
Research output: Contribution to journal › Article › Scientific › peer-review
Block copolymers (BCPs) are seen as a possible cost effective complementary technique to traditional lithography currently used in the semiconductor industry. This unconventional approach has received increased attention in recent years as a process capable of facilitating the ever decreasing device size demanded. Control over microdomain orientation and enhancing long range order are key aspects for the utility of BCPs for future lithographic purposes. This paper provides an efficient route for the fabrication of highly ordered nanostructures suitable for such application. We investigate the significant effect of surface treatment regarding the self-assembly process of polystyrene-block-poly(4-vinylpyridine) (PS-b-P4VP) by employing an ethylene glycol layer, producing well defined perpendicular P4VP cylinders with long range order over large surface areas. Nanopores are generated through surface reconstruction using a preferential solvent, which allows for the incorporation of an inorganic moiety. Treatment of this pattern with UV/Ozone leads to formation of well-ordered iron oxide nanodots with a pitch of ∼26 nm. Furthermore, high aspect ratio silicon nanopillars result following pattern transfer (using Ar/O2).
Research output: Contribution to journal › Article › Scientific › peer-review
BACKGROUND: Selenium (Se) discharged into natural waterbodies can accumulate over time and have negative impacts on the environment. Se-laden wastewater streams can be treated using biological processes. However, the presence of other electron acceptors in wastewater, such as nitrate (NO3 -) and sulfate (SO4 2-), can influence selenate (SeO4 2-) reduction and impact the efficiency of biological treatment systems. RESULTS: SeO4 2- removal by biofilms formed from an anaerobic sludge inoculum was investigated in the presence of NO3 - and SO4 2- using drip flow reactors operated continuously for 10days at pH7.0 and 30°C. The highest total Se (∼60%) and SeO4 2- (∼80%) removal efficiencies were observed when the artificial wastewater contained SO4 2-. A maximum amount of 68μmol Se cm-2 was recovered from the biofilm matrix in SO4 2-+SeO4 2- exposed biofilms and biofilm mass was 2.7-fold increased for biofilms grown in the presence of SO4 2-. When SeO4 2- was the only electron acceptor, biofilms were thin and compact. In the simultaneous presence of NO3 - or SO4 2-, biofilms were thicker (> 0.6mm), less compact and exhibited gas pockets. CONCLUSION: The presence of SO4 2- had a beneficial effect on biofilm growth and the SeO4 2- removal efficiency, while the presence of NO3 - did not have a significant effect on SeO4 2- removal by the biofilms.
Research output: Contribution to journal › Article › Scientific › peer-review
This rapid communication gives the salient points and results of the theoretical investigation of a chemical reaction for efficient selective hydrogen production. The clean fuel produced is a sustainable energy source. Accurate methods based on quantum theory are used because the changing electronic structure is a probe that monitors reactions. The reaction between water and carbon monoxide is used industrially with metal catalysts, usually platinum. There is a considerable economic and environmental challenge underpinning this fundamental investigation where bond dissociation plays an essential role. A bond dissociation process is often the limiting step of reaction rates for industrial catalysis. Most mainstream quantum approaches fail to a greater or lesser degree in the description of this process. The present work advocates a promising alternative: the initial analysis of statistical data generated by the Quantum Monte Carlo (QMC) method demonstrated very stringent statistical accuracy for essential information on hydrogen production via the water-gas shift reaction with platinum catalyst. The transition state structure is obtained from QMC force constants and illustrated here. It corresponds to water OH-stretch concerted with Pt-H bond formation, whilst the OH oxygen atom begins to interact with the CO carbon. The present QMC evaluation of the corresponding activation barrier is low: 17.0 ± 0.2 kcal/mol. It is close to the experimental apparent activation energy of 17.05 kcal/mol. This method is applicable to a wide range of similar systems.
Research output: Contribution to journal › Article › Scientific › peer-review
We use second-harmonic generation (SHG) with focused vector beams to investigate individual vertically aligned GaAs nanowires. Our results provide direct evidence that SHG from oriented nanowires is mainly driven by the longitudinal field along the nanowire growth axis. Consequently, focused radial polarization provides a superior tool to characterize such nanowires compared to linear polarization, also allowing this possibility in the native growth environment. We model our experiments by describing the SHG process for zinc-blende structure and dipolar bulk nonlinearity.
AUX=fys,"Grasso, Marco"
EXT="Dhaka, Veer"
EXT="Huttunen, Mikko J."
Research output: Contribution to journal › Article › Scientific › peer-review
We demonstrate that optical second-harmonic generation (SHG) from arrays of noncentrosymmetric gold nanoparticles depends essentially on particle geometry. We prepare nanoparticles with different geometrical shapes (L and T) but similar wavelengths for the polarization-dependent plasmon resonances. In contrast to recent interpretations emphasizing resonances at the fundamental frequency, the T shape leads to stronger SHG when only one, instead of both, polarization component of the fundamental field is resonant. This is explained by the character of plasmon oscillations supported by the two shapes. Our numerical simulations for both linear and second-order responses display unprecedented agreement with measurements.
Research output: Contribution to journal › Article › Scientific › peer-review
To meet the increasing volume of waste to be treated via energy recovery, high SRF-energy-share fuel is being fired in conventional waste-to-energy facilities. In this work, corrosion related risk during firing of 70 e-% share (target fuel) is studied and compared against the base case fuel containing 50 e-% share. Cl and S concentration is highest in the target fuel as a direct result of increasing the proportion of SRF in the fuel mixture. Br, Zn and Pb showed the same trend. Meanwhile, the concentration of Na, K, Al and Si are highly dependent on the type of the SRF fired. The corrosion risk of the base and target fuels are analyzed using the composition of the fine aerosol fraction and deposit samples measured near the vicinity of the superheater. Surprisingly aerosols for the target fuel are less risky - having less Cl and more S, than that of the base fuel. The effects of sulfur based additives - elemental sulfur and sulfate injection, and fuel substitution on the risk of superheater corrosion are likewise analyzed. All these strategies can reduce the concentration of Cl in the aerosols, however it is concluded that sulfate injection is considered as a robust strategy for mitigating alkali chloride formation. Sulfate injection is able to reduce Cl in the aerosols and deposits regardless of the quality of the fuel mixture. Robust strategies are important in ensuring the boiler performance during high SRF-energy share firing. An attempt of linking the quality of the deposits and the properties of the flue gas and aerosols around the superheater using partial least squares regression is also presented.
Research output: Contribution to journal › Article › Scientific › peer-review
Following our recent work which revealed the lowest-energy structures of Cd nTe n (n = 1-14) clusters follow the hollow cage and the endohedral cage structural growth patterns, we extend the search for the most stable structures to some larger clusters, i.e., Cd nTe n (n = 15, 16, 20, 24 and 28). Within the size range studied, the endohedral cages are more stable than the hollow cages. The endohedral atoms increase as the cluster size increases. The computed dipole moments and polarizabilities show a clear dependence on the cluster geometry and symmetry. The hollow cage isomers possess smaller dipole moments and larger polarizabilities than the endohedral ones.
Research output: Contribution to journal › Article › Scientific › peer-review
The effect of hydrothermal (150°C for 10min and 70°C for 40min), enzymatic (Accelerase 1500, 0.07g/g volatile solids (VS)), ultrasound (45kHz for 30min) and chemical pretreatments (HNO3 at pH3 and NaOH at pH12) alone or in combination on the chemical composition and methane yield of the pulp and paper mill secondary sludge was studied in batch assays at 55°C. In total, 12 different pretreatment combinations were compared. Chemical analyses showed that all pretreatments except for HNO3 and ultrasound pretreatments improved the organic matter solubilization. Among the studied pretreatments, hydrothermal (150°C, 10min) pretreatment alone or in combination with enzymatic and/or ultrasound pretreatment had the highest impact on sludge solubilization and methane yield. The increase in methane yield was 31% (from 108ml/g VSoriginal to 141ml/gVSoriginal). In addition, enzymatic pretreatment also improved the methane yields but only when combined with hydrothermal pretreatment at 150°C or ultrasound+hydrothermal pretreatment at 150°C. On the other hand, ultrasound pretreatment did not improve the methane yields while acid and alkaline pretreatments resulted in lower methane yields than control. Improved hydrolysis and higher methane production rates noticed in assays subjected to hydrothermal pretreatment alone or in combination with enzymes and/or ultrasound could make these treatments more attractive in reducing the retention times required during full-scale anaerobic digestion of pulp and paper mill wastewater sludges. © 2013 Elsevier B.V.
Contribution: organisation=keb,FACT1=1<br/>Portfolio EDEND: 2013-11-29<br/>Publisher name: Elsevier BV
Research output: Contribution to journal › Article › Scientific › peer-review
Membrane proteins travel along cellular membranes and reorient themselves to form functional oligomers and protein-lipid complexes. Following the Saffman-Delbrück model, protein radius sets the rate of this diffusive motion. However, it is unclear how this model, derived for ideal and dilute membranes, performs under crowded conditions of cellular membranes. Here, we study the rotational motion of membrane proteins using molecular dynamics simulations of coarse-grained membranes and 2-dimensional Lennard-Jones fluids with varying levels of crowding. We find that the Saffman-Delbrück model captures the size-dependency of rotational diffusion under dilute conditions where protein-protein interactions are negligible, whereas stronger scaling laws arise under crowding. Together with our recent work on lateral diffusion, our results reshape the description of protein dynamics in native membrane environments: The translational and rotational motions of proteins with small transmembrane domains are rapid, whereas larger proteins or protein complexes display substantially slower dynamics.
EXT="Martinez-Seara, Hector"
EXT="Ollila, O. H.Samuli"
Research output: Contribution to journal › Article › Scientific › peer-review
The role of π-conjugated molecular bridges in through-space and through-bond electron transfer is studied by comparing two porphyrin-fullerene donor-acceptor (D-A) dyads. One dyad, ZnP-Ph-C60 (ZnP=zinc porphyrin), incorporates a phenyl bridge between D and A and behaves very similarly to analogous dyads studied previously. The second dyad, ZnP-EDOTV-C60, introduces an additional 3,4-ethylenedioxythienylvinylene (EDOTV) unit into the conjugated bridge, which increases the distance between D and A, but, at the same time, provides increased electronic communication between them. Two essential outcomes that result from the introduction of the EDOTV unit in the bridge are as follows: 1)faster charge recombination, which indicates enhanced electronic coupling between the charge-separated and ground electronic states; and 2)the disappearance of the intramolecular exciplex, which mediates photoinduced charge separation in the ZnP-Ph-C60 dyad. The latter can be interpreted as a gradual decrease in electronic coupling between locally excited singlet states of D and A when introducing the EDOTV unit into the D-A bridge.
Research output: Contribution to journal › Article › Scientific › peer-review
In this work, we address the question of whether the enhanced stability of thermophilic proteins has a direct connection with internal hydration. Our model systems are two homologous G domains of different stability: the mesophilic G domain of the elongation factor thermal unstable protein from E. coli and the hyperthermophilic G domain of the EF-1α protein from S. solfataricus. Using molecular dynamics simulation at the microsecond time scale, we show that both proteins host water molecules in internal cavities and that these molecules exchange with the external solution in the nanosecond time scale. The hydration free energy of these sites evaluated via extensive calculations is found to be favorable for both systems, with the hyperthermophilic protein offering a slightly more favorable environment to host water molecules. We estimate that, under ambient conditions, the free energy gain due to internal hydration is about 1.3 kcal/mol in favor of the hyperthermophilic variant. However, we also find that, at the high working temperature of the hyperthermophile, the cavities are rather dehydrated, meaning that under extreme conditions other molecular factors secure the stability of the protein. Interestingly, we detect a clear correlation between the hydration of internal cavities and the protein conformational landscape. The emerging picture is that internal hydration is an effective observable to probe the conformational landscape of proteins. In the specific context of our investigation, the analysis confirms that the hyperthermophilic G domain is characterized by multiple states and it has a more flexible structure than its mesophilic homologue. (Figure Presented).
Research output: Contribution to journal › Article › Scientific › peer-review
Floor detection for indoor 3D localization of mobile devices is currently an important challenge in the wireless world. Many approaches currently exist, but usually the robustness of such approaches is not addressed or investigated. The goal of this paper is to show how to robustify the floor estimation when probabilistic approaches with a low number of parameters are employed. Indeed, such an approach would allow a building-independent estimation and a lower computing power at the mobile side. Four robustified algorithms are to be presented: a robust weighted centroid localization method, a robust linear trilateration method, a robust nonlinear trilateration method, and a robust deconvolution method. The proposed approaches use the received signal strengths (RSS) measured by the Mobile Station (MS) from various heardWiFi access points (APs) and provide an estimate of the vertical position of the MS, which can be used for floor detection. We will show that robustification can indeed increase the performance of the RSS-based floor detection algorithms.
Research output: Contribution to journal › Article › Scientific › peer-review
INT=fot,"Joost, Urmas"
Research output: Contribution to journal › Article › Scientific › peer-review
Label-free biosensors detect binding of prey molecules (″ analytes″) to immobile bait molecules on the sensing surface. Numerous methods are available for immobilization of bait molecules. A convenient option is binding of biotinylated bait molecules to streptavidin-functionalized surfaces, or to biotinylated surfaces via biotin-avidin-biotin bridges. The goal of this study was to find a rapid method for reversible immobilization of biotinylated bait molecules on biotinylated sensor chips. The task was to establish a biotin-avidin-biotin bridge which was easily cleaved when desired, yet perfectly stable under a wide range of measurement conditions. The problem was solved with the avidin mutant M96H which contains extra histidine residues at the subunit-subunit interfaces. This mutant was bound to a mixed self-assembled monolayer (SAM) containing biotin residues on 20% of the oligo(ethylene glycol)-terminated SAM components. Various biotinylated bait molecules were bound on top of the immobilized avidin mutant. The biotin-avidin-biotin bridge was stable at pH ≥3, and it was insensitive to sodium dodecyl sulfate (SDS) at neutral pH. Only the combination of citric acid (2.5%, pH 2) and SDS (0.25%) caused instantaneous cleavage of the biotin-avidin-biotin bridge. As a consequence, the biotinylated bait molecules could be immobilized and removed as often as desired, the only limit being the time span for reproducible chip function when kept in buffer (2-3 weeks at 25 C). As expected, the high isolectric pH (pI) of the avidin mutant caused nonspecific adsorption of proteins. This problem was solved by acetylation of avidin (to pI <5), or by optimization of SAM formation and passivation with biotin-BSA and BSA.
Research output: Contribution to journal › Article › Scientific › peer-review
Ion-specific effects on salting-in and salting-out of proteins, protein denaturation, as well as enzymatic activity are typically rationalized in terms of the Hofmeister series. Here, we demonstrate by means of NMR spectroscopy and molecular dynamics simulations that the traditional explanation of the Hofmeister ordering of ions in terms of their bulk hydration properties is inadequate. Using triglycine as a model system, we show that the Hofmeister series for anions changes from a direct to a reversed series upon uncapping the N-terminus. Weakly hydrated anions, such as iodide and thiocyanate, interact with the peptide bond, while strongly hydrated anions like sulfate are repelled from it. In contrast, reversed order in interactions of anions is observed at the positively charged, uncapped N-terminus, and by analogy, this should also be the case at side chains of positively charged amino acids. These results demonstrate that the specific chemical and physical properties of peptides and proteins play a fundamental role in ion-specific effects. The present study thus provides a molecular rationalization of Hofmeister ordering for the anions. It also provides a route for tuning these interactions by titration or mutation of basic amino acid residues on the protein surface.
Research output: Contribution to journal › Article › Scientific › peer-review
Amyloid aggregation of islet amyloid polypeptide (IAPP) in pancreatic tissues is a typical feature of type 2 diabetes mellitus. Resveratrol, a natural product extensively studied for its wide range of biological effects, has been shown to inhibit IAPP aggregation. However, the mechanism by which resveratrol inhibits IAPP aggregation is still far from complete elucidation. Now, an increasing knowledge of the mechanism of amyloid toxicity shifts the target of research towards the development of compounds which can prevent amyloid-mediated membrane damage rather than merely inhibit fiber formation. In this study we used all atom molecular dynamics to investigate the interaction of resveratrol with full-length human IAPP in a negatively charged membrane environment. Our results show that the presence of resveratrol induces the formation of secondary structures (sheets and helices) by inserting in a hydrophobic pocket between the interaction surface of two IAPP molecules in aqueous solution. On the other hand, resveratrol significantly perturbs the interaction of IAPP with negatively charged membranes by anchoring specific hydrophobic regions (23FGA25 and 32VGS34) of the peptide and forming a stable 1:2 IAPP:resveratrol complex at the water/membrane interphase.
Research output: Contribution to journal › Article › Scientific › peer-review
Stimulus-responsive materials: This thesis describes the development of stimulus-responsive polymeric materials based on liquid crystalline polymers and hydrogels. Novel responsive molecular building blocks were designed and synthesised. Specific monomer mixtures were crosslinked by UV-photopolymerisation methods, and the response of the obtained (structured) material was analysed.
Research output: Contribution to journal › Article › Scientific › peer-review
The unprecedented dependence of final charge separation efficiency as a function of donor-acceptor interaction in covalently-linked molecules with a rectilinear rigid oligo-p-xylene bridge has been observed. Optimization of the donor-acceptor electronic coupling remarkably inhibits the undesirable rapid decay of the singlet charge-separated state to the ground state, yielding the final long-lived, triplet charge-separated state with circa 100% efficiency. This finding is extremely useful for the rational design of artificial photosynthesis and organic photovoltaic cells toward efficient solar energy conversion.
Research output: Contribution to journal › Article › Scientific › peer-review
Release of halide ions is an essential step of the catalytic cycle of haloalkane dehalogenases. Here we describe experimentally and computationally the process of release of a halide anion from the buried active site of the haloalkane dehalogenase LinB. Using stopped-flow fluorescence analysis and umbrella sampling free energy calculations, we show that the anion binding is ion-specific and follows the ordering I- > Br- > Cl-. We also address the issue of the protonation state of the catalytic His272 residue and its effect on the process of halide release. While deprotonation of His272 increases binding of anions in the access tunnel, we show that the anionic ordering does not change with the switch of the protonation state. We also demonstrate that a sodium cation could relatively easily enter the active site, provided the His272 residue is singly protonated, and replace thus the missing proton. In contrast, Na+ is strongly repelled from the active site containing the doubly protonated His272 residue. Our study contributes toward understanding of the reaction mechanism of haloalkane dehalogenase enzyme family. Determination of the protonation state of the catalytic histidine throughout the catalytic cycle remains a challenge for future studies.
Research output: Contribution to journal › Article › Scientific › peer-review
Nano silica is generated in situ inside the uncrosslinked chloroprene rubber (CR) by the sol-gel reaction of tetraethoxysilane (TEOS). This results in appreciable improvement in mechanical properties of the CR composites at relatively low filler content. Furthermore, exploitation of reactive organosilanes, γ-aminopropyltrimethoxysilane (γ-APS) in particular, in the silica synthesis process facilitates growing of spherical silica particles with a size distribution in the range of 20-50 nm. The silica particles are found to be uniformly dispersed and they do not suffer from filler-filler interaction. Additionally, it is observed that the silica particles are coated by silane and rubber chains together which are popularly known as bound rubber. The existence of the bound rubber on silica surface has been supported by the detailed investigations with transmission electron microscopy (TEM), energy filtered transmission electron microscopy (EFTEM) and energy dispersive X-ray spectroscopy (EDAX). The interaction between rubber and silica, via bi-functionality of the γ-APS, has been explored by detailed FTIR studies.
Research output: Contribution to journal › Article › Scientific › peer-review
Sulfur deactivation and regeneration behavior of the Pd/Al2O3 catalyst has been investigated via experimental characterization and density functional theory (DFT) simulations. During the sulfur exposure, PdO crystallites grow slightly while bulk Al2(SO4)3 forms on the support. DFT calculations indicate that SOx species interact strongly with the catalyst surface making it chemically inactive in agreement with the experimental results. During the regeneration treatment (CH4 conditions), PdO particles reduce, Al2(SO4)3 is partially removed, and the activity for CH4 conversion is increased. No full recovery can be observed due to remaining Al2(SO4)3, the formation of encapsulating sulfur species, and the partial reduction of PdO particles. To reoxidize Pd, the catalyst is further regenerated (O2 conditions). The resulting CH4 conversion is at the same level than with the regenerated catalyst. Thus, a small amount of Al2(SO4)3 appears to have a stronger effect on the performance than the state of Pd.
Research output: Contribution to journal › Article › Scientific › peer-review
Common challenge in gas analyzers such as Ion Mobility Spectrometers (IMS) integrated into a measurement system is the reduced analysis speed that is partially limited by the temporal carry-over of sample molecules. It is caused by adsorption and absorption of the molecules into the gas tubes of the analyzer. We studied the recovery times of common tube materials: polyether ether ketone (PEEK), polytetrafluoroethylene (PTFE), fluorinated ethylene propylene (FEP), polyethylene (PE), steel 316 L, parylene C coated steel and Silconert® coated steel from organic combustion products. The tests were performed in two temperatures, at 25 °C and at 70 °C. In addition, detailed analysis was performed for PTFE tube material at 33, 50, 70 and 100 °C to observe the temperature relation of desorption. Uncoated steel was found to have the best performance in increased temperature applications due lack of absorption. Major advantages from coatings compared to plane steel were not found. Plastics were found suitable materials in lower temperatures where adsorption exceeds absorption.
Research output: Contribution to journal › Article › Scientific › peer-review
The design of functional and stimuli-responsive materials is among the key goals of modern materials science. The structure and properties of such materials can be controlled via various stimuli, among which light is often times the most attractive choice. Light is ubiquitous and a gentle energy source and its properties can be optimized for a specific target remotely, with high spatial and temporal resolution. Light-control over molecular alignment has in recent years attracted particular interest, for potential applications such as reconfigurable photonic elements and optical-to-mechanical energy conversion. Herein, we bring forward some recent examples and emerging trends in this exciting field of research, focusing on liquid crystals, liquid-crystalline polymers and photochromic organic crystals, which we believe serve to highlight the immense potential of light-responsive materials to a wide variety of current and future high-tech applications in photonics, energy harvesting and conversion. This journal is
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Review Article › Scientific › peer-review
Peroxy (RO 2 ) and alkoxy (RO) radicals are prototypical intermediates in any hydrocarbon oxidation. In this work, we use computational methods to (1) study the mechanism and kinetics of the RO 2 + OH reaction for previously unexplored "R" structures (R = CH(O)CH 2 and R = CH 3 C(O)) and (2) investigate a hitherto unaccounted channel of molecular growth, R′O 2 + RO. On the singlet surface, these reactions rapidly form ROOOH and R′OOOR adducts, respectively. The former decomposes to RO + HO 2 and R(O)OH + O 2 products, while the main decomposition channel for the latter is back to the reactant radicals. Decomposition rates of R′OOOR adducts varied between 103 and 0.015 s -1 at 298 K and 1 atm. The most long-lived R′OOOR adducts likely account for some fraction of the elemental compositions detected in the atmosphere that are commonly assigned to stable covalently bound dimers.
Research output: Contribution to journal › Article › Scientific › peer-review
Stretchable radio-frequency electronics are gaining popularity as a result of the increased functionality they gain through their flexible nature, impossible within the confines of rigid and planar substrates. One approach to fabricating stretchable antennas is to embed stretchable or flowable conductive materials, such as conductive polymers, conductive polymer composites, and liquid metal alloys as stretchable conduction lines. However, these conductive materials face many challenges, such as low electrical conductivity under mechanical deformation and delamination from substrates. In the present study, a silicone-based electrically conductive adhesive (silo-ECA) is developed that have a conductivity of 1.51×104 S cm -1 and can maintain conductivity above 1.11×103 S cm-1 , even at a large stain of 240%. By using the stretchable silo- ECAs as a conductor pattern and pure silicone elastomers as a base substrate, stretchable antennas can be fabricated by stencil printing or soft-lithography. The resulting antenna's resonant frequency is tunable over a wide range by mechanical modulation. This fabrication method is low-cost, can support large-scale production, has high reliability over a wide temperature range, and eliminates the concerns of leaking or delamination between conductor and substrate experienced in previously reported micro-fluidic antennas.
Research output: Contribution to journal › Article › Scientific › peer-review
Rate equation simulatin is used in the present computational approach in order to study the role of different adsorbed oxygen ions (O2 - and O-) in controlling the height of the Schottky barrier at the surface of SnO2, a key material in the field of semiconductor gas sensors. Computations are based on the adsorption/desorption model and consider the electron transfer between different oxygen species on the surface and the bulk conduction band. Different values have been tested for both the frequency factors and the activation energies of the rate constants in order to consider the relative population between the O- and O2 - ions on the surface at different temperatures, the dependence of the height of the surface Schottky barrier on temperature and oxygen partial pressure, and also the response and recovery times of the barrier heights as a consequence of rapid temperature changes. Comparisons of calculated barrier heights with some empirical values are also given at different temperatures and oxygen partial pressures.
Research output: Contribution to journal › Article › Scientific › peer-review
Research output: Contribution to journal › Article › Scientific › peer-review
Block copolymers (BCP) are highly promising self-assembling precursors for scalable nanolithography. Very regular BCP nanopatterns can be used as on-chip etch masks. The first step in the processing of BCP thin films is usually the chemical modification of the substrate surface, typically by grafting of a brush layer that renders the surface energy neutral relative to the constituent blocks. We provide here a first study on rapid, low temperature self-assembly of PS-. b-PDMS (polystyrene-. block-polydimethylsiloxane) on silicon substrates without a brush layer. We show that it forms line and antidot patterns after short solvo-thermal annealing. Unlike previous reports on this system, low temperature and short annealing time provide self-assembly in homogeneous thin films covering large substrate areas. This on-chip mask was then used for pattern transfer to the underlying silicon substrate. SEM (scanning electron microscope) images reveal silicon nanowires relative to the PDMS patterns of the BCP mask.
Research output: Contribution to journal › Article › Scientific › peer-review
Prostate cancer is the most common malignancy in men in the United States, and one in seven men with prostate cancer dies of the disease. A major issue of prostate diagnosis is that there is no good method to reliably distinguish aggressive prostate cancer from nonaggressive prostate cancer. This leads to significant unnecessary suffering among prostate cancer patients and massive unnecessary health care expenditures. In this study, we aim to identify glycoproteins associated with aggressive prostate cancer using optimal cutting temperature (OCT)-embedded frozen tissues obtained from patients with known clinical outcome. To eliminate the interference of mass spectrometric analysis by the compounds in OCT and identify extracellular proteins that are likely to serve as biomarkers in body fluids, we employed glycoproteomic analysis using solid-phase extraction of glycopeptides, which allowed the immobilization of glycopeptides to solid support and removal of OCT from sample proteins before releasing the glycopeptides from the solid support for mass spectrometry analysis. Tumor tissues were cryostat microdissected from four cases of aggressive and four cases of nonaggressive prostate tumors, and glycopeptides were isolated and labeled with iTRAQ reagents before the samples were analyzed with LTQ Orbitrap Velos. From the aggressive prostate cancer tissues, we identified the overexpression of three glycoproteins involved in an extracellular matrix remodeling and further examined two glycoproteins, cathepsin L and periostin, using Western blot and immunohistochemistry analyses. This is the first proteomic study to identify proteins potentially associated with aggressive prostate cancer using OCT-embedded frozen tissues. Further study of these proteins will be needed to understand the roles of extracellular matrix proteins in cancer progression and their potential clinical utility in improving diagnosis of aggressive prostate cancer.
Research output: Contribution to journal › Article › Scientific › peer-review
In this chapter, we give a conceptional view about information measures for graphs which can be used to quantify their structural complexity. We focus on treating such measures in the context of mathematical chemistry but we want to mention that those are also applicable for arbitrary complex networks. Besides reviewing the most known information indices often used in chemical graph theory, we propose an information functional that is based on degree-degree associations in a graph. This leads us to a parametric graph entropy measure to quantify the structural information content of a graph. A brief numerical example shows how the measure can be calculated explicitly.
Research output: Chapter in Book/Report/Conference proceeding › Chapter › Scientific › peer-review
Brownian motion is ergodic in the Boltzmann-Khinchin sense that long time averages of physical observables such as the mean squared displacement provide the same information as the corresponding ensemble average, even at out-of-equilibrium conditions. This property is the fundamental prerequisite for single particle tracking and its analysis in simple liquids. We study analytically and by event-driven molecular dynamics simulations the dynamics of force-free cooling granular gases and reveal a violation of ergodicity in this Boltzmann-Khinchin sense as well as distinct ageing of the system. Such granular gases comprise materials such as dilute gases of stones, sand, various types of powders, or large molecules, and their mixtures are ubiquitous in Nature and technology, in particular in Space. We treat - depending on the physical-chemical properties of the inter-particle interaction upon their pair collisions - both a constant and a velocity-dependent (viscoelastic) restitution coefficient ε. Moreover we compare the granular gas dynamics with an effective single particle stochastic model based on an underdamped Langevin equation with time dependent diffusivity. We find that both models share the same behaviour of the ensemble mean squared displacement (MSD) and the velocity correlations in the limit of weak dissipation. Qualitatively, the reported non-ergodic behaviour is generic for granular gases with any realistic dependence of ε on the impact velocity of particles.
Research output: Contribution to journal › Article › Scientific › peer-review
Understanding the electrochemical properties of bio-anodes is essential to improve performance of bioelectrochemical systems. Electrochemical Impedance Spectroscopy (EIS) is often used to study these properties in detail. Analysis of the EIS response, however, is challenging due to the interfering effect of the large capacitance of typically used graphite and carbon-based electrodes. In this study, we used flat electrodes made of conductive Fluorine-doped Tin Oxide (FTO) as anode, and monitored bio-anode performance. We show that with this configuration, it is possible to accurately separate the distinct contributions to the electrical response of the bio-anodes: charge transfer, biofilm and diffusion resistances, and biofilm capacitance. We observed that the capacitance of the biofilm increased from 2 μF cm−2 to 450 μF cm−2 during biofilm growth, showing a relationship with current and total produced charge. These results suggest that biofilm capacitance is a measure for the amount of active biomass in bioelectrochemical systems. At the end of the experiment, the biofilm was harvested from the FTO electrode and an average yield of 0.55 g COD biomass/mol e− was determined.
Research output: Contribution to journal › Article › Scientific › peer-review
The thermochemical behavior of cellulose, glucomannan, and xylan was investigated by pyrolysis–gas chromatography-mass spectrometry (Py-GC/MS). In each case, major GC-amenable condensable products were classified into several compound groups, and the formation of these monomer-related fragments from the model substance samples was determined at 500, 600, and 700 °C with a residence time of 5 s and 20 s. The results revealed that despite some general formation trends, no compound group was selectively formed at certain temperatures. Of the 11 product groups, the primary ones, including lactone, furan, and cyclopentenone derivatives, accounted for 72–85% (from cellulose), 86–90% (from glucomannan), and 76–81% (from xylan) of the total amount of pyrolysis products determined. At 500 °C, about half of the major product groups accounted for lactones, such as 3-hydroxy-2-penteno-1,5-lactone and 5H-furan-2-one. It was also confirmed by thermogravimetric analyses that within the temperature range studied, cellulose was thermally more stable than the heterogeneous hemicelluloses. These kinds of data are of importance, for example, with respect to efforts to develop new biorefinery possibilities for renewable resources.
Research output: Contribution to journal › Article › Scientific › peer-review
In this work, three novel pyrene cored small conjugated molecules, namely 1,3,6,8-tetrakis(6-(octyloxy)naphthalene-2-yl)pyrene (PY-1), 1,3,6,8-tetrakis((E)-2-(6-(n-octyloxy)naphthalene-2-yl)vinyl)pyrene (PY-2) and 1,3,6,8-tetrakis((6-(n-octyloxy)naphthalene-2-yl)ethynyl)pyrene (PY-3) have been synthesized by Suzuki, heck and Sonogashira organometallic coupling reactions, respectively. The effects of single, double and triple bonds on their optical, electrochemical, and thermal properties are studied in detail. These are all materials fluorescent and they have been used in organic light-emitting diodes (OLEDs) and their electroluminescent properties have been studied. This journal is
EXT="Salunke, Jagadish"
Research output: Contribution to journal › Article › Scientific › peer-review
The dynamic regulation of cell-matrix adhesion is essential for tissue homeostasis and architecture, and thus numerous pathologies are linked to altered cell-extracellular matrix (ECM) interaction and ECM scaffold. The molecular machinery involved in cell-matrix adhesion is complex and involves both sensory and matrix-remodelling functions. In this review, we focus on how protein conformation controls the organization and dynamics of cell-matrix adhesion. The conformational changes in various adhesion machinery components are described, including examples from ECM as well as cytoplasmic proteins. The discussed mechanisms involved in the regulation of protein conformation include mechanical stress, post-translational modifications and allosteric ligand-binding. We emphasize the potential role of intrinsically disordered protein regions in these processes and discuss the role of protein networks and co-operative protein interactions in the formation and consolidation of cell-matrix adhesion and extracellular scaffolds.
Research output: Contribution to journal › Article › Scientific › peer-review
Stellite-6 coatings were deposited onto AISI 304 stainless steel substrate by gas-fueled HVOF spraying, systematically varying the process parameter settings. By operating the HVOF torch with a fuel-rich mixture, dense coatings (<1% porosity) are produced, containing up to ≈3 vol% oxide inclusions. A substantial amount of a Cr-rich f.c.c. phase is found, mainly produced by quenching of molten lamellae, and distinct from the equilibrium, Co-based f.c.c. solid solution retained in unmelted particles. These coatings exhibit pseudo-passive behavior and survive 5 cycles (100 h) of the Corrodkote test (ASTM B380-97) with no substrate corrosion. Coatings obtained from oxygen-rich mixtures, on the other hand, contain fewer oxide inclusions but also greater porosity, and do not protect the substrate against corrosion. The wear behavior of the coatings is less influenced by deposition conditions. In ball-on-disk dry sliding tests, all coatings exhibit wear rates of 2–3 × 10−5 mm3/(N·m), higher than those reported for bulk or clad Stellite, because of interlamellar delamination. Strain-induced, “martensitic” phase transformation from the f.c.c. structure to a h.c.p. one is observed over a 1–2 μm depth below the contact surface. Additional tribo-oxidation is onset when frictional heat dissipation has heated the wear debris enough to trigger its reaction with the environment. Correspondingly, a transition to a regime of higher friction occurs (from ≈0.6 to ≈0.8). At 400 °C, lamellar delamination is suppressed but wear rates rise to 5–8 × 10−5 mm3/(N·m) because of abrasive and adhesive wear. At 800 °C, a dense “glaze” tribofilm is formed by sintered debris particles, firmly bonded to a thermally grown oxide scale on the underlying metal surface. The “glaze” protects the coating, lowering the wear rate to ≈1 × 10−5 mm3/(N·m) and the friction coefficient to <0.45. Under high-stress particle abrasion conditions, wear rates of ≈1 × 10−3 mm3/(N·m) are found.
Research output: Contribution to journal › Article › Scientific › peer-review
Summary Multipotent human adipose stem cells (hASCs) are an abundant and potential source of cells for vascular tissue engineering when combined with a suitable biomaterial scaffold. Poly(trimethylene carbonate) (PTMC) has been shown to be a useful biodegradable material for tissue engineered vascular grafts due to its flexibility, excellent biocompatibility and enzymatic degradation by surface erosion in vivo. The purpose of the current study was to evaluate the proliferation and differentiation of hASCs towards smooth muscle cells (SMCs) on gamma-crosslinked and photo-crosslinked PTMC membranes. PTMC macromers were functionalized with methacrylate end groups and crosslinked by UV initiated radical polymerization. High molecular weight linear PTMC was crosslinked by gamma irradiation. Cell viability, cell numbers and SMC differentiation of hASCs were evaluated on the differently crosslinked PTMC films at 7 and 14 days (d). On the photo-crosslinked membranes, homogenous monolayers of hASC were detected by live/dead assay. Consistently, cells on the photo-crosslinked membranes had significantly higher cell numbers compared to cells on the gamma-crosslinked membranes after 14 d of culture. SMC specific genes were expressed on both membranes at 14 d. Photo-crosslinked membranes showed higher expression of SMC specific proteins at 14 d compared to gamma-crosslinked membranes. These results suggest that especially the photo-crosslinked PTMC membranes are suitable for vascular tissue engineering applications when combined with hASCs.
Research output: Contribution to journal › Article › Scientific › peer-review
Living systems have inspired research on non-biological dynamic materials and systems chemistry to mimic specific complex biological functions. Upon pursuing ever more complex life-inspired non-biological systems, mimicking even the most elementary aspects of learning is a grand challenge. We demonstrate a programmable hydrogel-based model system, whose behaviour is inspired by associative learning, i.e., conditioning, which is among the simplest forms of learning. Algorithmically, associative learning minimally requires responsivity to two different stimuli and a memory element. Herein, nanoparticles form the memory element, where a photoacid-driven pH-change leads to their chain-like assembly with a modified spectral behaviour. On associating selected light irradiation with heating, the gel starts to melt upon the irradiation, originally a neutral stimulus. A logic diagram describes such an evolution of the material response. Coupled chemical reactions drive the system out-of-equilibrium, allowing forgetting and memory recovery. The findings encourage to search non-biological materials towards associative and dynamic properties.
Research output: Contribution to journal › Article › Scientific › peer-review
New photocatalytic fibers made of sulfonated polyetheretherketone (SPEEK)/polypropylene (PP) are melt compounded and melt spun, first on laboratory scale and then on a semi-industrial scale. Fiber spinnability is optimized and the fibers are characterized using mechanical testing, electron paramagnetic resonance (EPR) spectroscopy, and scanning electron microscopy (SEM). According to the results, the fiber spinnability remains at a good level up to 10 wt % SPEEK concentration. Optimal processing temperature is 200C due to the thermal degradation at higher temperatures. EPR measurements show good and long-lasting photoactivity after the initial irradiation but also decay in the radical intensity during several irradiation cycles. Mechanical tenacity of the SPEEK/PP 5:95 fiber is approximately 20% lower than for otherwise similar PP fiber. The fiber is a potential alternative to compete against TiO2-based products but more research needs to be done to verify the real-life performance.
ORG=mol,0.5
ORG=mei,0.5
EXT="Skrifvars, Mikael"
Research output: Contribution to journal › Article › Scientific › peer-review
A new bisphenol viz., 4-(4-hydroxyphenoxy)-3-pentadecylphenol (HPPDP) was synthesized starting from cashew nut shell liquid (CNSL). Aromatic (co)polyesters containing ether linkages in the main chain and pendent pentadecyl chains were synthesized by the interfacial polycondensation of HPPDP with terephthalic acid chloride (TPC), isophthalic acid chloride (IPC) and a mixture of TPC and IPC (50:50 mol %) and by polycondenation of varying composition of HPPDP and bisphenol-A (BPA) with TPC. The resultant (co)polyesters exhibited inherent viscosities in the range 0.70–1.21 dL g−1 and number-average molecular weights in the range 16,000–48,200 (GPC, polystyrene standard). Polyesters were soluble in common organic solvents such as chloroform and dichloromethane and could be cast into films from chloroform solution. Polyesters exhibited T10 values in the range 430–455 °C and Tg values were in the range 29–202 °C. Dynamic mechanical storage modulus and maximum on transition of tan δ curve decreased with increased content of HPPDP in copolyesters. Importantly, the large difference between Tg and T10 values offers the possibility to process these polyesters in the melt.
EXT=”Salunke, Jagadish”
Research output: Contribution to journal › Article › Scientific › peer-review
A layered double hydroxide (LDH) mineral filler particle has been designed and employed in rubber vulcanization to prepare a more environmentally friendly rubber composite. The LDH delivers zinc ions in the vulcanization process as accelerators, stearate anions as activators and simultaneously the mineral sheets act as a nanofiller to reinforce the rubber matrix whilst totally replacing the separate zinc oxide (ZnO) and stearic acid conventionally used in the formulation of rubber. This method leads to a significant reduction (nearly 10 times) of the zinc level and yields excellent transparent properties in the final rubber product. The morphological characterization, rheometric curing behaviour, mechanical properties and uniaxial multi-hysteresis behaviours of the resultant rubber/LDH nanocomposite are studied in this paper.
Research output: Contribution to journal › Article › Scientific › peer-review
The preparation of 5-substituted 2-carboxyindoles on solid support is reported. In the approach, the indole moiety is synthesized in solution phase, followed by nitro-group reduction, reductive amination and alkylation on solid support. The method provides a simple and convenient route for the preparation of 5-substituted 2-carboxyindoles with high purity and good yield. (C) 2000 Elsevier Science Ltd.
Research output: Contribution to journal › Article › Scientific › peer-review
Preferential adsorption of Cu contained in wastewaters is desirable as the Cu can then be reprocessed and reused more easily. In this study, biogenic elemental selenium nanoparticles (BioSeNPs) were assessed for their ability to preferentially adsorb Cu from an equimolar mixture containing Cu, Cd and Zn. Variations in metal to BioSeNPs ratios and initial metal solution pH improved the preferential adsorption capacity of BioSeNPs toward Cu, with the ratio of Cu adsorbed to combined Cd and Zn adsorbed varying from 2.3 to 6.6. More than 78% of the added Cu was adsorbed at an initial metal solution pH of 5.2 and metal to BioSeNPs ratio of 0.21mgmg-1 when the ratio of Cu adsorbed to the sum of Cd and Zn adsorbed was 2.3. Infrared spectroscopy revealed that the Cu, Cd and Zn were interacting with the hydroxyl and carboxyl surface functional groups of the BioSeNPs. The modeling of BioSeNPs' acid-base titration revealed the presence of high concentrations of carboxylic groups (C=60.3molkg-1) with a pKa of 3.9, providing further evidence of their interaction with Cu. The adsorption of Cu resulted in a lower colloidal stability of the BioSeNPs as indicated by more than 99% retention of added BioSeNPs after adsorption of heavy metals and filtration. BioSeNPs showed a good preferential adsorption capacity toward Cu as compared to other adsorbent. This study provides a proof-of-concept for the preferential adsorption of Cu onto BioSeNPs which are present in the effluent of a bioreactor treating selenium oxyanions containing wastewater.
Research output: Contribution to journal › Article › Scientific › peer-review
A computational scheme for molecules is presented for the evaluation of total enregy properties such as potential energy curves and vibrational frequencies. The calculations are performed within the local density approximation utilizing the LCAO MO scheme with numerical basis functions, and multipole expansion of the molecular charge density is used to obtain the molecular potential. The total energy expression is written in terms of matrix elements already used for solving one-electron equations, and hence any evaluation of explicit integrals over charge density is avoided. The accuracy of the method and the effect of basis set incompleteness are studied for the CO and N2 molecules and compared with fully numerical (basis-free) results.
Research output: Contribution to journal › Article › Scientific › peer-review
The autoxidative condensation of 2-aryl-2-lithio-1,3-dithianes is here reported. Treatment of 2-aryl-1,3-dithianes with n-BuLi in the absence of any electrophile leads to condensation of three molecules of 1,3-dithianes and formation of highly functionalized α-thioether ketones orthothioesters in 51-89% yields upon air exposure. The method was further expanded to benzaldehyde dithioacetals, affording corresponding orthothioesters and α-thioether ketones in 48-97% yields. The experimental results combined with density functional theory studies support a mechanism triggered by the autoxidation of 2-aryl-2-lithio-1,3-dithianes to yield a highly reactive thioester that undergoes condensation with two other molecules of 2-aryl-2-lithio-1,3-dithiane.
INT=keb,"Vale, Joao R."
Research output: Contribution to journal › Article › Scientific › peer-review
Differential Mobility Spectrometry (DMS), also called as FAIMS is a variation of atmospheric pressure ion mobility measurement techniques and is capable of providing information about the electric field - mobility dependence of ions. In this method, a combined electric field is used. This field consists of asymmetric oscillating electric field of high intensity and low static field component. Analytical information in DMS is 2-dimensional dependence of ionic current on oscillating field amplitude and the value of static field intensity. The measurement of DMS signal for whole ranges of both variables is time consuming and also generates lot of data. It is a disadvantage of DMS method, which limits the use of this otherwise powerful technology in real time applications that require a response time of few seconds. This paper presents a way to limit measurement time by heuristic knowledge of the properties of the data space and another method based on the concept of Shannon Entropy to find operating parameters satisfying both separation and signal to noise ratio requirements.
Research output: Contribution to journal › Article › Scientific › peer-review
Today, the Intelligent Transportation Systems (ITS) are already in deep integration phase all over the world. One of the most significant enablers for ITS are vehicle positioning and tracking techniques. Worldwide integration of ITS employing Dedicated Short Range Communications (DSRC) and European standard for vehicular communication, known as ETSI ITS-G5, brings a variety of options to improve the positioning in areas where GPS connectivity is lacking precision. Utilization of the ready infrastructure, next-generation cellular 5G networks, and surrounding electronic devices together with conventional positioning techniques could become the solution to improve the overall ITS operation in vehicle-to-everything (V2X) communication scenario. Nonetheless, effective and secure communication protocols between the vehicle and roadside units should be both analyzed and improved in terms of potential attacks on the transmitted positioning-related data. In particular, said information might be misused or stolen at the infrastructure side conventionally assumed to be trusted. In this paper, we first survey different methods of vehicle positioning, which is followed by an overview of potential attacks on ITS systems. Next, we propose potential improvements allowing mutual authentication between the vehicle and infrastructure aiming at improving positioning data privacy. Finally, we propose a vision on the development and standardization aspects of such systems.
Research output: Contribution to journal › Article › Scientific › peer-review
Electron transfer at the adsorbate-surface interface is crucial in many applications but the steps taking place prior to and during the electron transfer are not always thoroughly understood. In this work a model system of 4-(porphyrin-5-yl)benzoic acid adsorbed as a corresponding benzoate on the ZnO wurtzite (1010) surface is studied using density functional theory (DFT) and time-dependent DFT. Emphasis is on the initial photoexcitation of porphyrin and on the strength of coupling between the porphyrin LUMO or LUMO + 1 and the ZnO conduction band that plays a role in the electron transfer. Firstly, ZnO wurtzite bulk is optimized to minimum energy geometry and the properties of the isolated ZnO (1010) surface model and the porphyrin model are discussed to gain insight into the combined system. Secondly, various orientations of the model porphyrin on the ZnO surface are studied: the porphyrin model standing perpendicularly to the surface and gradually brought close to the surface by tilting the linker in a few steps. The porphyrin model approaches the surface either sideways with hydrogen atoms of the porphyrin ring coming down first or twisted in a ca. 45° angle, giving rise to π-interactions of the porphyrin ring with ZnO. Because porphyrins are closely packed and near the surface, emerging van der Waals (vdW) interactions are examined using Grimme's D2 method. While the orientation affects the initial excitation of porphyrin only slightly, the coupling between the LUMO and LUMO + 1 of porphyrin and the conduction band of ZnO increases considerably if porphyrin is close to the surface, especially if the π-electrons are interacting with the surface. Based on the results of coupling studies, not only the distance between porphyrin and the ZnO surface but also the orientation of porphyrin can greatly affect the electron transfer. © 2013 the Owner Societies.
poistettu tuplat r=2454 ja r=3218<br/>Contribution: organisation=keb,FACT1=0.5<br/>Contribution: organisation=fys,FACT2=0.5<br/>Portfolio EDEND: 2013-10-29<br/>Pu