Dehmer, Matthias, Frank Emmert-Streib and Tanja Gesell. "A comparative analysis of multidimensional features of objects resembling sets of graphs". Applied Mathematics and Computation. 2008, 196(1). 221-235. https://doi.org/10.1016/j.amc.2007.05.058

Wang, Jianguang and Asok K. Ray. "A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers". Journal of Computational and Theoretical Nanoscience. 2014, 11(7). 1710-1717. https://doi.org/10.1166/jctn.2014.3555

Emmert-Streib, Frank. "Algorithmic computation of knot polynomials of secondary structure elements of proteins". Journal of Computational Biology. 2006, 13(8). 1503-1512. https://doi.org/10.1089/cmb.2006.13.1503

Enkavi, Giray et al. "A microscopic view of the mechanisms of active transport across the cellular membrane". Annual Reports in Computational Chemistry. 2014, 10. 77-125. https://doi.org/10.1016/B978-0-444-63378-1.00004-5

Levämäki, H. et al. "An automated algorithm for reliable equation of state fitting of magnetic systems". Computational Materials Science. 2019, 156. 121-128. https://doi.org/10.1016/j.commatsci.2018.09.026

Dehmer, Matthias et al. "An efficient heuristic approach to detecting graph isomorphism based on combinations of highly discriminating invariants". Advances in Computational Mathematics. 2013, 39(2). 311-325. https://doi.org/10.1007/s10444-012-9281-0

Yin, Qian et al. "A novel epidemic model considering demographics and intercity commuting on complex dynamical networks". Applied Mathematics and Computation. 2020. 386. https://doi.org/10.1016/j.amc.2020.125517

Rodrigues, Paulo C., Andreia Monteiro and Vanda M. Lourenço. "A robust AMMI model for the analysis of genotype-by-environment data". Bioinformatics. 2015, 32(1). 58-66. https://doi.org/10.1093/bioinformatics/btv533

Dehmer, Matthias, Frank Emmert-Streib and Jürgen Kilian. "A similarity measure for graphs with low computational complexity". Applied Mathematics and Computation. 2006, 182(1). 447-459. https://doi.org/10.1016/j.amc.2006.04.006

Yu, Guoqiang et al. "BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data". Bioinformatics. 2011, 27(11). 1473-1480. https://doi.org/10.1093/bioinformatics/btr183

Häkkinen, Antti and Andre S. Ribeiro. "Characterizing rate limiting steps in transcription from RNA production times in live cells". Bioinformatics. 2016, 32(9). 1346-1352. https://doi.org/10.1093/bioinformatics/btv744

Dong, Guoqing et al. "Chipless graphene tag and dual-CP reader for Internet of Things". 2017 International Applied Computational Electromagnetics Society Symposium in China, ACES-China 2017. IEEE. 2017.

Kuang, Ye et al. "Circularly Polarized Textile Tag Antenna for Wearable Passive UHF RFID Systems". 2018 International Applied Computational Electromagnetics Society Symposium in China, ACES-China 2018. IEEE. 2019. https://doi.org/10.23919/ACESS.2018.8669314

Kartasalo, Kimmo et al. "Comparative analysis of tissue reconstruction algorithms for 3D histology". Bioinformatics. 2018, 34(17). 3013-3021. https://doi.org/10.1093/bioinformatics/bty210

Dehmer, Matthias and Frank Emmert-Streib. "Comparing large graphs efficiently by margins of feature vectors". Applied Mathematics and Computation. 2007, 188(2). 1699-1710. https://doi.org/10.1016/j.amc.2006.11.185

Ma, Shubin et al. "Comparison of Human Head Phantoms with Different Complexities for Implantable Antenna Development". 2018 International Applied Computational Electromagnetics Society (ACES) Symposium: 29 July-1 Aug. 2018, China. IEEE. 2019. https://doi.org/10.23919/ACESS.2018.8669363

Stockrahm, Alex et al. "Cuts for 3-D magnetic scalar potentials: Visualizing unintuitive surfaces arising from trivial knots". Computers and Mathematics with Applications. 2019. https://doi.org/10.1016/j.camwa.2019.05.023

Ma, Li et al. "Density functional theory study of FePdn (n = 2-14) clusters and interactions with small molecules". Computational Materials Science. 2013, 68. 166-173. https://doi.org/10.1016/j.commatsci.2012.10.014

Chen, Zengqiang et al. "Entropy bounds for dendrimers". Applied Mathematics and Computation. 2014, 242. 462-472. https://doi.org/10.1016/j.amc.2014.05.105

Häkkinen, Antti and Andre S. Ribeiro. "Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data". Bioinformatics. 2015, 31(1). 69-75. https://doi.org/10.1093/bioinformatics/btu592

Emmert-Streib, Frank. "Evolutionary dynamics of the spatial Prisoner's Dilemma with self-inhibition". Applied Mathematics and Computation. 2012, 218(11). 6482-6488. https://doi.org/10.1016/j.amc.2011.12.018

Rahmatallah, Y., F. Emmert-Streib and G. Glazko. "Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses". Bioinformatics. 2012, 28(23). 3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Rahmatallah, Yasir, Frank Emmert-Streib and Galina Glazko. "Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets". Bioinformatics. 2014, 30(3). 360-368. https://doi.org/10.1093/bioinformatics/btt687

Dehmer, Matthias, Frank Emmert-Streib and Yongtang Shi. "Graph distance measures based on topological indices revisited". Applied Mathematics and Computation. 2015, 266. 623-633. https://doi.org/10.1016/j.amc.2015.05.072

Wan, Pengfei et al. "Graph entropy based on the number of spanning forests of c-cyclic graphs". Applied Mathematics and Computation. 2019. 363. https://doi.org/10.1016/j.amc.2019.124616

Ma, Li and Asok K. Ray. "Growth behavior and magnetic properties of spherical uranium oxide nanoclusters". Journal of Computational and Theoretical Nanoscience. 2013, 10(2). 334-340. https://doi.org/10.1166/jctn.2013.2701

Orelma, H. and N. Vieira. "Homogeneous (α,k)-Polynomial Solutions of the Fractional Riesz System in Hyperbolic Space". Complex Analysis and Operator Theory. 2017, 11(5). 1253–1267. https://doi.org/10.1007/s11785-017-0666-4

Eriksson, S. L., H. Orelma and N. Vieira. "Hypermonogenic Functions of Two Vector Variables". Complex Analysis and Operator Theory. 2018, 12(2). 555–570. https://doi.org/10.1007/s11785-017-0728-7

Guzmán Adán, Alí, Heikki Orelma and Franciscus Sommen. "Hypermonogenic solutions and plane waves of the Dirac operator in Rp×Rq". Applied Mathematics and Computation. 2019, 346. 1-14. https://doi.org/10.1016/j.amc.2018.09.058

Emmert-Streib, Frank and Matthias Dehmer. "Information theoretic measures of UHG graphs with low computational complexity". Applied Mathematics and Computation. 2007, 190(2). 1783-1794. https://doi.org/10.1016/j.amc.2007.02.095

Vuojamo, Vesa and Sirkka-Liisa Eriksson. "Integral kernels for k-hypermonogenic functions". Complex Variables and Elliptic Equations. 2017, 62(9). 1-12. https://doi.org/10.1080/17476933.2016.1250402

Luukko, P. J. J., J. Helske, and E. Räsänen. "Introducing libeemd: a program package for performing the ensemble empirical mode decomposition". Computational Statistics. 2016, 31(2). 545-557. https://doi.org/10.1007/s00180-015-0603-9

Singh, Arun Kumar et al. "Introducing Multi-Convexity in Path Constrained Trajectory Optimization for Mobile Manipulators". European Control Conference 2020, ECC 2020. IEEE. 2020, 1178-1185.

Uusitalo, Mikko A., Jaakko Peltonen and Tapani Ryhänen. "Machine learning: How it can help nanocomputing". Journal of Computational and Theoretical Nanoscience. 2011, 8(8). 1347-1363. https://doi.org/10.1166/jctn.2011.1821

Airiskallio, E. et al. "Magnetic origin of the chemical balance in alloyed Fe-Cr stainless steels: First-principles and Ising model study". Computational Materials Science. 2014, 92. 135-140. https://doi.org/10.1016/j.commatsci.2014.05.036

Valkealahti, S. and M. Manninen. "Melting of copper clusters". Computational Materials Science. 1993, 1(2). 123-134. https://doi.org/10.1016/0927-0256(93)90003-6

Kuva, J., M. Voutilainen and K. Mattila. "Modeling mass transfer in fracture flows with the time domain-random walk method". COMPUTATIONAL GEOSCIENCES. 2019. https://doi.org/10.1007/s10596-019-09852-5

Dumitrescu, Bogdan, Bogdan C. Şicleru and Florin Avram. "Modeling probability densities with sums of exponentials via polynomial approximation". Journal of Computational and Applied Mathematics. 2016, 292. 513–525. https://doi.org/10.1016/j.cam.2015.07.032

Carabias Orti, Julio Jose et al. "Multichannel Blind Sound Source Separation using Spatial Covariance Model with Level and Time Differences and Non-Negative Matrix Factorization". IEEE/ACM Transactions on Audio Speech and Language Processing. 2018, 26(9). 1512-1527. https://doi.org/10.1109/TASLP.2018.2830105

Tripathi, Shailesh, Matthias Dehmer, and Frank Emmert-Streib. "NetBioV: An R package for visualizing large network data in biology and medicine". Bioinformatics. 2014, 30(19). 2834-2836. https://doi.org/10.1093/bioinformatics/btu384

Dehmer, Matthias et al. "On efficient network similarity measures". Applied Mathematics and Computation. 2019. 362. https://doi.org/10.1016/j.amc.2019.06.035

Eriksson, Sirkka-Liisa and Heikki Orelma. "On k-Hypermonogenic Functions and Their Mean Value Properties". Complex Analysis and Operator Theory. 2016, 10(2). 311-325. https://doi.org/10.1007/s11785-015-0445-z

Batty, Charles, Lassi Paunonen and David Seifert. "Optimal energy decay for the wave-heat system on a rectangular domain". SIAM JOURNAL ON MATHEMATICAL ANALYSIS. 2019, 51(2). 808-819. https://doi.org/10.1137/18M1195796

Dehmer, Matthias et al. "Relations and bounds for the zeros of graph polynomials using vertex orbits". Applied Mathematics and Computation. 2020. 380. https://doi.org/10.1016/j.amc.2020.125239

Gusrialdi, Azwirman et al. "Resilient Cooperative Voltage Control for Distribution Network with High Penetration Distributed Energy Resources". European Control Conference 2020, ECC 2020. IEEE. 2020, 1533-1539.

Altay, Gökmen and Frank Emmert-Streib. "Revealing differences in gene network inference algorithms on the network level by ensemble methods". Bioinformatics. 2010, 26(14). 1738-1744. https://doi.org/10.1093/bioinformatics/btq259

Stupnikov, Alexey et al. "SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files". Bioinformatics. 2016, 32(21). 3345-3347. https://doi.org/10.1093/bioinformatics/btw475

Hella, Lauri et al. "Satisfiability of modal inclusion logic: Lax and strict semantics". ACM TRANSACTIONS ON COMPUTATIONAL LOGIC. 2019. 21(1). https://doi.org/10.1145/3356043

Martins, Leonardo et al. "SCIP: a single-cell image processor toolbox". Bioinformatics. 2018, 34(24). 4318-4320. https://doi.org/10.1093/bioinformatics/bty505

Mesaros, Annamaria et al. "Sound Event Detection in the DCASE 2017 Challenge". IEEE/ACM Transactions on Audio Speech and Language Processing. 2019, 27(6). 992-1006. https://doi.org/10.1109/TASLP.2019.2907016

Dehmer, Matthias and Frank Emmert-Streib. "Structural similarity of directed universal hierarchical graphs: A low computational complexity approach". Applied Mathematics and Computation. 2007, 194(1). 7-20. https://doi.org/10.1016/j.amc.2007.04.006

Belahcen, A., R. Kouhia and K. Fonteyn "The different levels of magneto-mechanical coupling in energy conversion machines and devices". Proceedings of the 4th International Conference on Computational Methods for Coupled Problems in Science and Engineering, COUPLED PROBLEMS 2011. 2011, 472-483.

Ghorbani, Modjtaba et al. "The watching system as a generalization of identifying code". Applied Mathematics and Computation. 2020. 380. https://doi.org/10.1016/j.amc.2020.125302

Emmert-Streib, Frank and Matthias Dehmer. "Topological mappings between graphs, trees and generalized trees". Applied Mathematics and Computation. 2007, 186(2). 1326-1333. https://doi.org/10.1016/j.amc.2006.07.162

Ylinen, Antti, Jari Mäkinen, and Reijo Kouhia "Two models for hydraulic cylinders in flexible multibody simulations". Computational Methods for Solids and Fluids: Multiscale Analysis, Probability Aspects and Model Reduction. Computational Methods in Applied Sciences. Springer. 2016, 463-493. https://doi.org/10.1007/978-3-319-27996-1_17

Glazko, Galina V. and Frank Emmert-Streib. "Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets". Bioinformatics. 2009, 25(18). 2348-2354. https://doi.org/10.1093/bioinformatics/btp406

Emmert-Streib, Frank. "Universal construction mechanism for networks from one-dimensional symbol sequences". Applied Mathematics and Computation. 2012, 219(3). 1020-1030. https://doi.org/10.1016/j.amc.2012.07.006

Karilainen, Topi et al. "Van der Waals interactions are critical in Car-Parrinello molecular dynamics simulations of porphyrin-fullerene dyads". Journal of Computational Chemistry. 2015, 36(9). 612-621. https://doi.org/10.1002/jcc.23834

Yang, Dan et al. "Visibility-Aware Part Coding for Vehicle Viewing Angle Estimation". 9th International Conference on Information Science and Technology, ICIST 2019. IEEE. 2019, 65-70. https://doi.org/10.1109/ICIST.2019.8836907