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Krüsemann H, Godec A, Metzler R. 2015. Ageing first passage time density in continuous time random walks and quenched energy landscapes. Journal of Physics A: Mathematical and Theoretical. 48(28).

Safdari H, Chechkin AV, Jafari GR, Metzler R. 2015. Aging scaled Brownian motion. Physical Review E. 91(4).

Rodrigues PC, Monteiro A, Lourenço VM. 2015. A robust AMMI model for the analysis of genotype-by-environment data. Bioinformatics. 32(1):58-66.

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Häkkinen A, Ribeiro AS. 2016. Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinformatics. 32(9):1346-1352.

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Blavatska V, Metzler R. 2015. Conformational properties of complex polymers: Rosette versus star-like structures. Journal of Physics A: Mathematical and Theoretical. 48(13).

Aho V, Mattila K, Kühn T, Kekäläinen P, Pulkkinen O, Minussi RB, Vihinen-Ranta M, Timonen J. 2016. Diffusion through thin membranes: Modeling across scales. Physical Review E. 93(4).

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Subramaniyam NP, Hyttinen J. 2015. Dynamics of intracranial electroencephalographic recordings from epilepsy patients using univariate and bivariate recurrence networks. Physical Review E. 91(2).

Cherstvy AG, Metzler R. 2015. Ergodicity breaking, ageing, and confinement in generalized diffusion processes with position and time dependent diffusivity. Journal of Statistical Mechanics: Theory and Experiment. 2015(5).

Häkkinen A, Ribeiro AS. 2015. Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinformatics. 31(1):69-75.

Emmert-Streib F. 2010. Exploratory analysis of spatiotemporal patterns of cellular automata by clustering compressibility. Physical Review E. 81(2).

Emmert-Streib F, Dehmer M. 2009. Fault tolerance of information processing in gene networks. Physica A: Statistical Mechanics and Its Applications. 388(4):541-548.

Ropo M, Schneider M, Baldauf C, Blum V. 2016. First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids. Scientific Data. 3.

Mahmoudvand R, Alehosseini F, Rodrigues PC. 2015. Forecasting mortality rate by singular spectrum analysis. REVSTAT STATISTICAL JOURNAL. 13(3):193-206.

Peltonen J, Kaski S. 2011. Generative modeling for maximizing precision and recall in information visualization. Journal of Machine Learning Research. 15:579-587.

Rahmatallah Y, Emmert-Streib F, Glazko G. 2012. Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses. Bioinformatics. 28(23):3073-3080.

Rahmatallah Y, Emmert-Streib F, Glazko G. 2014. Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets. Bioinformatics. 30(3):360-368.

Bencheikh K, Räsänen E. 2015. Hermitian one-particle density matrix through a semiclassical gradient expansion. Journal of Physics A: Mathematical and Theoretical. 49(1).

Hegele LA, Scagliarini A, Sbragaglia M, Mattila KK, Philippi PC, Puleri DF, Gounley J, Randles A. 2018. High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method. Physical Review E. 98(4).

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Yang Z, Peltonen J, Kaski S. 2015. Majorization-minimization for manifold embedding. Journal of Machine Learning Research. 38:1088-1097.

Tripathi S, Dehmer M, Emmert-Streib F. 2014. NetBioV: An R package for visualizing large network data in biology and medicine. Bioinformatics. 30(19):2834-2836.

Alberucci A, Laudyn UA, Piccardi A, Kwasny M, Klus B, Karpierz MA, Assanto G. 2017. Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects. Physical Review E. 96(1).

Godec A, Metzler R. 2015. Optimization and universality of Brownian search in a basic model of quenched heterogeneous media. Physical Review E. 91(5).

Devassy L, Jisha CP, Alberucci A, Kuriakose VC. 2015. Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach. Physical Review E. 92(2).

Safdari H, Cherstvy AG, Chechkin AV, Thiel F, Sokolov IM, Metzler R. 2015. Quantifying the non-ergodicity of scaled Brownian motion. Journal of Physics A: Mathematical and Theoretical. 48(37).

Assanto G, Marchant TR, Minzoni AA, Smyth NF. 2011. Reorientational versus Kerr dark and gray solitary waves using modulation theory. Physical Review E. 84(6).

Altay G, Emmert-Streib F. 2010. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics. 26(14):1738-1744.

Stupnikov A, Tripathi S, De Matos Simoes R, McArt D, Salto-Tellez M, Glazko G, Dehmer M, Emmert-Streib F. 2016. SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 32(21):3345-3347.

Martins L, Neeli-Venkata R, Oliveira SMD, Häkkinen A, Ribeiro AS, Fonseca JM. 2018. SCIP: a single-cell image processor toolbox. Bioinformatics. 34(24):4318-4320.

Palyulin VV, Chechkin AV, Klages R, Metzler R. 2016. Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration. Journal of Physics A: Mathematical and Theoretical. 49(39).

Godec A, Metzler R. 2015. Signal focusing through active transport. Physical Review E. 92(1).

Rodrigues PC, Moreira EE, Jesus VM, Mexia JT. 2014. Structured orthogonal families of one and two strata prime basis factorial models. Statistical Papers. 55(3):603-614.

Glazko GV, Emmert-Streib F. 2009. Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets. Bioinformatics. 25(18):2348-2354.

Larjo A, Lähdesmäki H. 2015. Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning. Eurasip Journal on Bioinformatics and Systems Biology. 2015(1).

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