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Ylinen, Antti, Jari Mäkinen, and Reijo Kouhia "Two models for hydraulic cylinders in flexible multibody simulations". Computational Methods for Solids and Fluids: Multiscale Analysis, Probability Aspects and Model Reduction. Computational Methods in Applied Sciences. Springer. 2016, 463-493. https://doi.org/10.1007/978-3-319-27996-1_17

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Dehmer, Matthias, Frank Emmert-Streib and Yongtang Shi. "Graph distance measures based on topological indices revisited". Applied Mathematics and Computation. 2015, 266. 623-633. https://doi.org/10.1016/j.amc.2015.05.072

Häkkinen, Antti and Andre S. Ribeiro. "Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data". Bioinformatics. 2015, 31(1). 69-75. https://doi.org/10.1093/bioinformatics/btu592

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Tripathi, Shailesh, Matthias Dehmer, and Frank Emmert-Streib. "NetBioV: An R package for visualizing large network data in biology and medicine". Bioinformatics. 2014, 30(19). 2834-2836. https://doi.org/10.1093/bioinformatics/btu384

Rahmatallah, Yasir, Frank Emmert-Streib and Galina Glazko. "Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets". Bioinformatics. 2014, 30(3). 360-368. https://doi.org/10.1093/bioinformatics/btt687

Wang, Jianguang and Asok K. Ray. "A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers". Journal of Computational and Theoretical Nanoscience. 2014, 11(7). 1710-1717. https://doi.org/10.1166/jctn.2014.3555

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Dehmer, Matthias et al. "An efficient heuristic approach to detecting graph isomorphism based on combinations of highly discriminating invariants". Advances in Computational Mathematics. 2013, 39(2). 311-325. https://doi.org/10.1007/s10444-012-9281-0

Ma, Li et al. "Density functional theory study of FePdn (n = 2-14) clusters and interactions with small molecules". Computational Materials Science. 2013, 68. 166-173. https://doi.org/10.1016/j.commatsci.2012.10.014

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Rahmatallah, Y., F. Emmert-Streib and G. Glazko. "Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses". Bioinformatics. 2012, 28(23). 3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Emmert-Streib, Frank. "Universal construction mechanism for networks from one-dimensional symbol sequences". Applied Mathematics and Computation. 2012, 219(3). 1020-1030. https://doi.org/10.1016/j.amc.2012.07.006

Emmert-Streib, Frank. "Evolutionary dynamics of the spatial Prisoner's Dilemma with self-inhibition". Applied Mathematics and Computation. 2012, 218(11). 6482-6488. https://doi.org/10.1016/j.amc.2011.12.018

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Altay, Gökmen and Frank Emmert-Streib. "Revealing differences in gene network inference algorithms on the network level by ensemble methods". Bioinformatics. 2010, 26(14). 1738-1744. https://doi.org/10.1093/bioinformatics/btq259

Glazko, Galina V. and Frank Emmert-Streib. "Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets". Bioinformatics. 2009, 25(18). 2348-2354. https://doi.org/10.1093/bioinformatics/btp406

Dehmer, Matthias, Frank Emmert-Streib and Tanja Gesell. "A comparative analysis of multidimensional features of objects resembling sets of graphs". Applied Mathematics and Computation. 2008, 196(1). 221-235. https://doi.org/10.1016/j.amc.2007.05.058

Dehmer, Matthias and Frank Emmert-Streib. "Structural similarity of directed universal hierarchical graphs: A low computational complexity approach". Applied Mathematics and Computation. 2007, 194(1). 7-20. https://doi.org/10.1016/j.amc.2007.04.006

Emmert-Streib, Frank and Matthias Dehmer. "Information theoretic measures of UHG graphs with low computational complexity". Applied Mathematics and Computation. 2007, 190(2). 1783-1794. https://doi.org/10.1016/j.amc.2007.02.095

Dehmer, Matthias and Frank Emmert-Streib. "Comparing large graphs efficiently by margins of feature vectors". Applied Mathematics and Computation. 2007, 188(2). 1699-1710. https://doi.org/10.1016/j.amc.2006.11.185

Emmert-Streib, Frank and Matthias Dehmer. "Topological mappings between graphs, trees and generalized trees". Applied Mathematics and Computation. 2007, 186(2). 1326-1333. https://doi.org/10.1016/j.amc.2006.07.162

Dehmer, Matthias, Frank Emmert-Streib and Jürgen Kilian. "A similarity measure for graphs with low computational complexity". Applied Mathematics and Computation. 2006, 182(1). 447-459. https://doi.org/10.1016/j.amc.2006.04.006

Emmert-Streib, Frank. "Algorithmic computation of knot polynomials of secondary structure elements of proteins". Journal of Computational Biology. 2006, 13(8). 1503-1512. https://doi.org/10.1089/cmb.2006.13.1503

Valkealahti, S. and M. Manninen. "Melting of copper clusters". Computational Materials Science. 1993, 1(2). 123-134. https://doi.org/10.1016/0927-0256(93)90003-6