Tomkowski, Robert ; Sorsa, Aki ; Santa-Aho, Suvi ; Lundin, Per ; Vippola, Minnamari. / Statistical evaluation of barkhausen noise testing (BNT) for ground samples. In: Sensors (Switzerland). 2019 ; Vol. 19, No. 21.

Inha, Laura M. ; Katko, Tapio S. ; Rajala, Riikka P. / Improved water services cooperation through clarification of rules and roles. In: Water (Switzerland). 2019 ; Vol. 11, No. 10.

Saegusa, Toshiyuki ; Sakai, Hayato ; Nagashima, Hiroki ; Kobori, Yasuhiro ; Tkachenko, Nikolai V. ; Hasobe, Taku. / Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission. In: Journal of the American Chemical Society. 2019 ; Vol. 141, No. 37. pp. 14720-14727.

Li, Shiqian ; Prasanna, Xavier ; Salo, Veijo T. ; Vattulainen, Ilpo ; Ikonen, Elina. / An efficient auxin-inducible degron system with low basal degradation in human cells. In: Nature Methods. 2019 ; Vol. 16, No. 9. pp. 866-869.

Poojari, Chetan ; Wilkosz, Natalia ; Lira, Rafael B. ; Dimova, Rumiana ; Jurkiewicz, Piotr ; Petka, Rafał ; Kepczynski, Mariusz ; Róg, Tomasz. / Behavior of the DPH fluorescence probe in membranes perturbed by drugs. In: Chemistry and Physics of Lipids. 2019 ; Vol. 223.

Wang, Shujiang ; Nawale, Ganesh N. ; Oommen, Oommen P. ; Hilborn, Jöns ; Varghese, Oommen P. / Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels. In: Polymer Chemistry. 2019 ; Vol. 10, No. 31. pp. 4322-4327.

Pitkänen, S. ; Paakinaho, K. ; Pihlman, H. ; Ahola, N. ; Hannula, M. ; Asikainen, S. ; Manninen, M. ; Morelius, M. ; Keränen, P. ; Hyttinen, J. ; Kellomäki, M. ; Laitinen-Vapaavuori, O. ; Miettinen, S. / Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications. In: European cells & materials. 2019 ; Vol. 38. pp. 35-50.

Jackson, T. ; Shenkin, A. ; Moore, J. ; Bunce, A. ; van Emmerik, T. ; Kane, B. ; Burcham, D. ; James, K. ; Selker, J. ; Calders, K. ; Origo, N. ; Disney, M. ; Burt, A. ; Wilkes, P. ; Raumonen, P. ; Gonzalez de Tanago Menaca, J. ; Lau, A. ; Herold, M. ; Goodman, R. C. ; Fourcaud, T. ; Malhi, Y. / An architectural understanding of natural sway frequencies in trees. In: Journal of the Royal Society. Interface. 2019 ; Vol. 16, No. 155.

Ali, Ihtisham ; Suominen, Olli ; Gotchev, Atanas ; Morales, Emilio Ruiz. / Methods for simultaneous robot-world-hand–eye calibration : A comparative study. In: Sensors (Switzerland). 2019 ; Vol. 19, No. 12.

Habib, Mohsin ; Serebryannikov, Andriy E. ; Caglayan, Humeyra ; Vandenbosch, Guy A.E. ; Ozbay, Ekmel. / Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons. In: Plasmonics. 2019 ; Vol. 14, No. 3. pp. 721-729.

Kekonen, Atte ; Bergelin, Mikael ; Johansson, Max ; Kumar Joon, Narender ; Bobacka, Johan ; Viik, Jari. / Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current. In: Sensors. 2019 ; Vol. 19, No. 11.

Kerst, Thomas ; Malmbeck, Rikard ; lal Banik, Nidhu L. ; Toivonen, Juha. / Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution. In: Sensors (Switzerland). 2019 ; Vol. 19, No. 7.

Ometov, Aleksandr ; Bezzateev, Sergey ; Davydov, Vadim ; Shchesniak, Anna ; Masek, Pavel ; Lohan, Elena Simona ; Koucheryavy, Yevgeni. / Positioning information privacy in intelligent transportation systems : An overview and future perspective. In: Sensors. 2019 ; Vol. 19, No. 7.

Liimatainen, Kaisa ; Kananen, Lauri ; Latonen, Leena ; Ruusuvuori, Pekka. / Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. In: BMC Bioinformatics. 2019 ; Vol. 20, No. 1.

Startceva, Sofia ; Kandavalli, Vinodh K. ; Visa, Ari ; Ribeiro, Andre S. / Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression. In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 2019 ; Vol. 1862, No. 2. pp. 119-128.

Ylä-Outinen, Laura ; Tanskanen, Jarno M.A. ; Kapucu, Fikret E. ; Hyysalo, Anu ; Hyttinen, Jari A.K. ; Narkilahti, Susanna. / Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis. In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, 2019. pp. 299-329 (Advances in Neurobiology).

Martins, Leonardo ; Neeli-Venkata, Ramakanth ; Oliveira, Samuel M.D. ; Häkkinen, Antti ; Ribeiro, Andre S. ; Fonseca, José M. / SCIP : a single-cell image processor toolbox. In: Bioinformatics. 2018 ; Vol. 34, No. 24. pp. 4318-4320.

Rinne, Jukka ; Keskinen, Jari ; Berger, Paul R. ; Lupo, Donald ; Valkama, Mikko. / M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components. In: Sensors (Basel, Switzerland). 2018 ; Vol. 18, No. 11.

Chevrier, Daniel M. ; Raich, Lluís ; Rovira, Carme ; Das, Anindita ; Luo, Zhentao ; Yao, Qiaofeng ; Chatt, Amares ; Xie, Jianping ; Jin, Rongchao ; Akola, Jaakko ; Zhang, Peng. / Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters. In: Journal of the American Chemical Society. 2018 ; Vol. 140, No. 45. pp. 15430-15436.

Mobarak, Edouard ; Javanainen, Matti ; Kulig, Waldemar ; Honigmann, Alf ; Sezgin, Erdinc ; Aho, Noora ; Eggeling, Christian ; Rog, Tomasz ; Vattulainen, Ilpo. / How to minimize dye-induced perturbations while studying biomembrane structure and dynamics : PEG linkers as a rational alternative. In: Biochimica et Biophysica Acta - Biomembranes. 2018 ; Vol. 1860, No. 11. pp. 2436-2445.

Calderón-Garcidueñas, Lilian ; González-Maciel, Angélica ; Reynoso-Robles, Rafael ; Kulesza, Randy J. ; Mukherjee, Partha S. ; Torres-Jardón, Ricardo ; Rönkkö, Topi ; Doty, Richard L. / Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology. In: Environmental Research. 2018 ; Vol. 166. pp. 348-362.

Kartasalo, Kimmo ; Latonen, Leena ; Vihinen, Jorma ; Visakorpi, Tapio ; Nykter, Matti ; Ruusuvuori, Pekka. / Comparative analysis of tissue reconstruction algorithms for 3D histology. In: Bioinformatics. 2018 ; Vol. 34, No. 17. pp. 3013-3021.

Owen, Michael C. ; Kulig, Waldemar ; Poojari, Chetan ; Rog, Tomasz ; Strodel, Birgit. / Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. In: Biochimica et Biophysica Acta - Biomembranes. 2018 ; Vol. 1860, No. 9. pp. 1709-1720.

Pirhonen, Mikko ; Peltokangas, Mikko ; Vehkaoja, Antti. / Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra. In: Sensors. 2018 ; Vol. 18, No. 6.

Virtanen, Juhani ; Somppi, Sanni ; Törnqvist, Heini ; Jeyhani, Vala ; Fiedler, Patrique ; Gizatdinova, Yulia ; Majaranta, Päivi ; Väätäjä, Heli ; Cardó, Anna Valldeoriola ; Lekkala, Jukka ; Tuukkanen, Sampo ; Surakka, Veikko ; Vainio, Outi ; Vehkaoja, Antti. / Evaluation of dry electrodes in canine heart rate monitoring. In: Sensors. 2018 ; Vol. 18, No. 6.

George, Lijo ; Hiltunen, Arto ; Santala, Ville ; Efimov, Alexander. / Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp. In: Journal of Inorganic Biochemistry. 2018 ; Vol. 183. pp. 94-100.

Åkerblom, Markku ; Raumonen, Pasi ; Casella, Eric ; Disney, Mathias I. ; Danson, F. Mark ; Gaulton, Rachel ; Schofield, Lucy A. ; Kaasalainen, Mikko. / Non-intersecting leaf insertion algorithm for tree structure models. In: Interface Focus. 2018 ; Vol. 8, No. 2.

Kaasalainen, Sanna ; Åkerblom, Markku ; Nevalainen, Olli ; Hakala, Teemu ; Kaasalainen, Mikko. / Uncertainty in multispectral lidar signals caused by incidence angle effects. In: Interface Focus. 2018 ; Vol. 8, No. 2.

Disney, M. I. ; Boni Vicari, M. ; Burt, A. ; Calders, K. ; Lewis, S. L. ; Raumonen, P. ; Wilkes, P. / Weighing trees with lasers : Advances, challenges and opportunities. In: Interface Focus. 2018 ; Vol. 8, No. 2.

Karvinen, Jennika ; Joki, Tiina ; Ylä-Outinen, Laura ; Koivisto, Janne T. ; Narkilahti, Susanna ; Kellomäki, Minna. / Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells. In: Reactive and Functional Polymers. 2018 ; Vol. 124. pp. 29-39.

Mehrang, Saeed ; Pietilä, Julia ; Korhonen, Ilkka. / An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band. In: Sensors. 2018 ; Vol. 18, No. 2.

Hakala, Markku ; Kalimeri, Maria ; Enkavi, Giray ; Vattulainen, Ilpo ; Lappalainen, Pekka. / Molecular mechanism for inhibition of twinfilin by phosphoinositides. In: Journal of Biological Chemistry. 2018 ; Vol. 293, No. 13. pp. 4818-4829.

Tienaho, Jenni ; Poikulainen, Emmi ; Sarjala, Tytti ; Muilu-Mäkelä, Riina ; Santala, Ville ; Karp, Matti. / A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. In: Photochemistry and Photobiology. 2018 ; Vol. 94, No. 6. pp. 1273-1280.

Ojansivu, M. ; Wang, X. ; Hyväri, L. ; Kellomäki, M. ; Hupa, L. ; Vanhatupa, S. ; Miettinen, S. / Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases. In: European Cells and Materials. 2018 ; Vol. 35. pp. 53-71.

Khanongnuch, Ramita ; Di Capua, Francesco ; Lakaniemi, Aino-Maija ; Rene, Eldon R. ; Lens, Piet N.L. / Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor : Experimental and artificial neural network model analysis. In: Process Biochemistry. 2018 ; Vol. 68. pp. 171-181.

Rokade, Shalaka S. ; Joshi, Komal A. ; Mahajan, Ketakee ; Patil, Saniya ; Tomar, Geetanjali ; Dubal, Dnyanesh S. ; Parihar, Vijay Singh ; Kitture, Rohini ; Bellare, Jayesh R. ; Ghosh, Sougata. / Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer. In: Bioinorganic Chemistry and Applications. 2018 ; Vol. 2018.

Fedele, Chiara ; De Gregorio, Maria ; Netti, Paolo A. ; Cavalli, Silvia ; Attanasio, Chiara. / Azopolymer photopatterning for directional control of angiogenesis. In: Acta Biomaterialia. 2017 ; Vol. 63. pp. 317-325.

Ferreira, Ana R.V. ; Haapanen, Janne ; Mäkelä, Jyrki M. ; Bratvold, Jon E. ; Nilsen, Ola ; Tuominen, Mikko ; Alves, Vítor D. ; Coelhoso, Isabel M. / Comparison of different coating techniques on the properties of FucoPol films. In: International Journal of Biological Macromolecules. 2017 ; Vol. 103. pp. 268-274.

Sciacca, Michele F.M. ; Romanucci, Valeria ; Zarrelli, Armando ; Monaco, Irene ; Lolicato, Fabio ; Spinella, Natalia ; Galati, Clelia ; Grasso, Giuseppe ; D'Urso, Luisa ; Romeo, Margherita ; Diomede, Luisa ; Salmona, Mario ; Bongiorno, Corrado ; Di Fabio, Giovanni ; La Rosa, Carmelo ; Milardi, Danilo. / Inhibition of Aβ Amyloid Growth and Toxicity by Silybins : The Crucial Role of Stereochemistry. In: ACS Chemical Neuroscience. 2017 ; Vol. 8, No. 8. pp. 1767-1778.

Tripathi, Shailesh ; Lloyd-Price, Jason ; Ribeiro, Andre ; Yli-Harja, Olli ; Dehmer, Matthias ; Emmert-Streib, Frank. / sgnesR : An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters. In: BMC Bioinformatics. 2017 ; Vol. 18, No. 1.

Nogueira, Idelfonso B.R. ; Ribeiro, Ana M. ; Martins, Márcio A.F. ; Rodrigues, Alírio E. ; Koivisto, Hannu ; Loureiro, José M. / Dynamics of a True Moving Bed separation process : Linear model identification and advanced process control. In: Journal of Chromatography A. 2017 ; Vol. 1504.

Mokkila, Sini ; Postila, Pekka A. ; Rissanen, Sami ; Juhola, Hanna ; Vattulainen, Ilpo ; Róg, Tomasz. / Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. In: ACS Chemical Neuroscience. 2017 ; Vol. 8, No. 6. pp. 1242-1250.

Manna, Moutusi ; Javanainen, Matti ; Martinez-Seara Monne, Hector ; Gabius, Hans-Joachim ; Rog, Tomasz ; Vattulainen, Ilpo. / Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation. In: Biochimica et Biophysica Acta: Biomembranes. 2017 ; Vol. 1859, No. 5. pp. 870-878.

Kahraman, Mehmet ; Ozbay, Ayse ; Yuksel, Handan ; Solmaz, Ramazan ; Demir, Baran ; Caglayan, Humeyra. / Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. In: Plasmonics. 2017 ; pp. 1-11.

Higashino, Tomohiro ; Nakatsuji, Hirotaka ; Fukuda, Ryosuke ; Okamoto, Haruki ; Imai, Hirohiko ; Matsuda, Tetsuya ; Tochio, Hidehito ; Shirakawa, Masahiro ; Tkachenko, Nikolai V. ; Hashida, Mitsuru ; Murakami, Tatsuya ; Imahori, Hiroshi. / Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging. In: ChemBioChem. 2017 ; Vol. 18, No. 10. pp. 951-959.

Bilkova, Eva ; Pleskot, Roman ; Rissanen, Sami ; Sun, Simou ; Czogalla, Aleksander ; Cwiklik, Lukasz ; Róg, Tomasz ; Vattulainen, Ilpo ; Cremer, Paul S. ; Jungwirth, Pavel ; Coskun, Ünal. / Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition. In: Journal of the American Chemical Society. 2017 ; Vol. 139, No. 11. pp. 4019-4024.

Milani, Roberto ; Houbenov, Nikolay ; Fernandez-Palacio, Francisco ; Cavallo, Gabriella ; Luzio, Alessandro ; Haataja, Johannes ; Giancane, Gabriele ; Saccone, Marco ; Priimägi, Arri ; Metrangolo, Pierangelo ; Ikkala, Olli. / Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains. In: CheM. 2017 ; Vol. 2, No. 3. pp. 417-426.

Euro, Liliya ; Haapanen, Outi ; Róg, Tomasz ; Vattulainen, Ilpo ; Suomalainen, Anu ; Sharma, Vivek. / Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ : Novel Mechanisms of Function and Pathogenesis. In: Biochemistry. 2017 ; Vol. 56, No. 9. pp. 1227-1238.

Balanta, M. A G ; Orsi Gordo, V. ; Carvalho, A. R H ; Puustinen, J. ; Alghamdi, H. M. ; Henini, M. ; Galeti, H. V A ; Guina, M. ; Galvão Gobato, Y. / Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells. In: Journal of Luminescence. 2017 ; Vol. 182. pp. 49-52.

Rahmatallah, Yasir ; Zybailov, Boris ; Emmert-Streib, Frank ; Glazko, Galina. / GSAR : Bioconductor package for Gene Set analysis in R. In: BMC Bioinformatics. 2017 ; Vol. 18, No. 1.

Grabon, Aby ; Orłowski, Adam ; Tripathi, Ashutosh ; Vuorio, Joni ; Javanainen, Matti ; Róg, Tomasz ; Lönnfors, Max ; McDermott, Mark I. ; Siebert, Garland ; Somerharju, Pentti ; Vattulainen, Ilpo ; Bankaitis, Vytas A. / Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle. In: Journal of Biological Chemistry. 2017 ; Vol. 292, No. 35. pp. 14438-14455.

Lahbib, Ikram ; Valkonen, Arto ; Rzaigui, Mohamed ; Smirani, Wajda. / Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex. In: Journal of Cluster Science. 2017 ; Vol. 28, No. 4. pp. 2239–2252.

Stupnikov, Alexey ; Tripathi, Shailesh ; De Matos Simoes, Ricardo ; McArt, Darragh ; Salto-Tellez, Manuel ; Glazko, Galina ; Dehmer, Matthias ; Emmert-Streib, Frank. / SamExploreR : Exploring reproducibility and robustness of RNA-seq results based on SAM files. In: Bioinformatics. 2016 ; Vol. 32, No. 21. pp. 3345-3347.

Kandavalli, Vinodh K. ; Tran, Huy ; Ribeiro, Andre S. / Effects of σ factor competition are promoter initiation kinetics dependent. In: Biochimica et Biophysica Acta: Gene Regulatory Mechanisms. 2016 ; Vol. 1859, No. 10. pp. 1281-1288.

Kuleta, Patryk ; Sarewicz, Marcin ; Postila, Pekka ; Róg, Tomasz ; Osyczka, Artur. / Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1. In: Biochimica et Biophysica Acta: Bioenergetics. 2016 ; Vol. 1857, No. 10. pp. 1661-1668.

Vattulainen, Ilpo ; Róg, Tomasz. / Lipid membranes : Theory and simulations bridged to experiments. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 1858, No. 10. pp. 2251-2253.

Javanainen, Matti ; Martinez-Seara, Hector. / Efficient preparation and analysis of membrane and membrane protein systems. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 1858, No. 10. pp. 2468-2482.

Kepczynski, Mariusz ; Róg, Tomasz. / Functionalized lipids and surfactants for specific applications. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 1858, No. 10. pp. 2362-2379.

Kaurola, Petri ; Sharma, Vivek ; Vonk, Amanda ; Vattulainen, Ilpo ; Róg, Tomasz. / Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 1858, No. 9. pp. 2116-2122.

Sharma, Vivek ; Wikström, Mårten. / The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. In: Biochimica et Biophysica Acta: Bioenergetics. 2016 ; Vol. 1857, No. 8. pp. 1111-1115.

Razavi, Alireza ; Valkama, Mikko ; Lohan, Elena Simona. / Robust statistical approaches for RSS-based floor detection in indoor localization. In: Sensors. 2016 ; Vol. 16, No. 6.

Häkkinen, Antti ; Ribeiro, Andre S. / Characterizing rate limiting steps in transcription from RNA production times in live cells. In: Bioinformatics. 2016 ; Vol. 32, No. 9. pp. 1346-1352.

Vuornos, Kaisa ; Björninen, Miina ; Talvitie, Elina ; Paakinaho, Kaarlo ; Kellomäki, Minna ; Huhtala, Heini ; Miettinen, Susanna ; Seppänen-Kaijansinkko, Riitta ; Haimi, Suvi. / Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering. In: Tissue Engineering Part A. 2016 ; Vol. 22, No. 5-6. pp. 513-523.

Kulig, Waldemar ; Cwiklik, Lukasz ; Jurkiewicz, Piotr ; Rog, Tomasz ; Vattulainen, Ilpo. / Cholesterol oxidation products and their biological importance. In: Chemistry and Physics of Lipids. 2016 ; Vol. 199. pp. 144-160.

Teppola, Heidi ; Sarkanen, Jertta Riina ; Jalonen, Tuula O. ; Linne, Marja-Leena. / Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol. In: Neurochemical Research. 2016 ; Vol. 41, No. 4. pp. 731-747.

Metzler, R. ; Jeon, J. H. ; Cherstvy, A. G. / Non-Brownian diffusion in lipid membranes : Experiments and simulations. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 215. pp. 173–185.

Pöyry, Sanja ; Vattulainen, Ilpo. / Role of charged lipids in membrane structures : Insight given by simulations. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; pp. 2322–2333.

Rog, Tomasz ; Koivuniemi, Artturi. / The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations. In: Biochimica et Biophysica Acta: Biomembranes. 2016 ; Vol. 1858, No. 1. pp. 97-103.

Jia, Li ; Sun, Zhonghe ; Wu, Xiaolin ; Misteli, Tom ; Sharma, Vivek. / Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. In: Genomics Data. 2015 ; Vol. 6. pp. 277-279.

Ravi, Aruna ; Luthra, Antriksh ; Teixeira, Fernando L. ; Berger, Paul R. ; Coe, James V. / Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. In: Plasmonics. 2015 ; Vol. 10, No. 6. pp. 1505-1512.

Sharma, Vivek ; Khurana, Simran ; Kubben, Nard ; Abdelmohsen, Kotb ; Oberdoerffer, Philipp ; Gorospe, Myriam ; Misteli, Tom. / A BRCA1-interacting lncRNA regulates homologous recombination. In: EMBO REPORTS. 2015 ; Vol. 16, No. 11. pp. 1520-1534.

Vapaavuori, Jaana ; Laventure, Audrey ; Bazuin, C. Geraldine ; Lebel, Olivier ; Pellerin, Christian. / Submolecular Plasticization Induced by Photons in Azobenzene Materials. In: Journal of the American Chemical Society. 2015 ; Vol. 137, No. 42. pp. 13510-13517.

Ryödi, Essi ; Metso, Saara ; Jaatinen, Pia ; Huhtala, Heini ; Saaristo, Rauni ; Välimäki, Matti ; Auvinen, Anssi. / Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism. In: Journal of Clinical Endocrinology and Metabolism. 2015 ; Vol. 100, No. 10. pp. 3710-3717.

Sorkio, Anni ; Porter, Patrick J. ; Juuti-Uusitalo, Kati ; Meenan, Brian J. ; Skottman, Heli ; Burke, George A. / Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells. In: Tissue Engineering Part A. 2015 ; Vol. 21, No. 17-18. pp. 2301-2314.

Ojansivu, Miina ; Vanhatupa, Sari ; Björkvik, Leena ; Häkkänen, Heikki ; Kellomäki, Minna ; Autio, Reija ; Ihalainen, Janne A. ; Hupa, Leena ; Miettinen, Susanna. / Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells. In: Acta Biomaterialia. 2015 ; Vol. 21. pp. 190-203.

Rodrigues, Paulo C. ; Monteiro, Andreia ; Lourenço, Vanda M. / A robust AMMI model for the analysis of genotype-by-environment data. In: Bioinformatics. 2015 ; Vol. 32, No. 1. pp. 58-66.

Kulig, Waldemar ; Olzyńska, Agnieszka ; Jurkiewicz, Piotr ; Kantola, Anu M. ; Komulainen, Sanna ; Manna, Moutusi ; Pourmousa, Mohsen ; Vazdar, Mario ; Cwiklik, Lukasz ; Rog, Tomasz ; Khelashvili, George ; Harries, Daniel ; Telkki, Ville Veikko ; Hof, Martin ; Vattulainen, Ilpo ; Jungwirth, Pavel. / Cholesterol under oxidative stress : How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. In: Free Radical Biology and Medicine. 2015 ; Vol. 84. pp. 30-41.

Nguyen, Su Duy ; Javanainen, Matti ; Rissanen, Sami ; Zhao, Hongxia ; Huusko, Jenni ; Kivelä, Annukka M. ; Ylä-Herttuala, Seppo ; Navab, Mohamad ; Fogelman, Alan M. ; Vattulainen, Ilpo ; Kovanen, Petri T. ; Öörni, Katariina. / Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation. In: Journal of Lipid Research. 2015 ; Vol. 56, No. 6. pp. 1206-1221.

Olsen, Catharina ; Fleming, Kathleen ; Prendergast, Niall ; Rubio, Renee ; Emmert-Streib, Frank ; Bontempi, Gianluca ; Quackenbush, John ; Haibe-Kains, Benjamin. / Using shRNA experiments to validate gene regulatory networks. In: Genomics Data. 2015 ; Vol. 4. pp. 123-126.

Sharma, Vivek ; Ala-Vannesluoma, Pauliina ; Vattulainen, Ilpo ; Wikström, Mårten ; Róg, Tomasz. / Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase. In: Biochimica et Biophysica Acta: Bioenergetics. 2015 ; Vol. 1847, No. 8. pp. 690-697.

Potapov, Ilya ; Zhurov, Boris ; Volkov, Evgeny. / Multi-stable dynamics of the non-adiabatic repressilator. In: Journal of the Royal Society. Interface. 2015 ; Vol. 12, No. 104.

Schroeder, Christi A. ; Pluharová, Eva ; Seidel, Robert ; Schroeder, William P. ; Faubel, Manfred ; Slavíçek, Petr ; Winter, Bernd ; Jungwirth, Pavel ; Bradforth, Stephen E. / Oxidation half-reaction of aqueous nucleosides and nucleotides via photoelectron spectroscopy augmented by ab initio calculations. In: Journal of the American Chemical Society. 2015 ; Vol. 137, No. 1. pp. 201-209.

Häkkinen, Antti ; Ribeiro, Andre S. / Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. In: Bioinformatics. 2015 ; Vol. 31, No. 1. pp. 69-75.

Lehtonen, Soili I. ; Taskinen, Barbara ; Ojala, Elina ; Kukkurainen, Sampo ; Rahikainen, Rolle ; Riihimäki, Tiina A. ; Laitinen, Olli H. ; Kulomaa, Markku S. ; Hytönen, Vesa P. / Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning. In: Protein Engineering Design and Selection. 2015 ; Vol. 28, No. 1. pp. 23-28.

Kulig, Waldemar ; Jurkiewicz, Piotr ; Olzyńska, Agnieszka ; Tynkkynen, Joona ; Javanainen, Matti ; Manna, Moutusi ; Rog, Tomasz ; Hof, Martin ; Vattulainen, Ilpo ; Jungwirth, Pavel. / Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate. In: Biochimica et Biophysica Acta: Biomembranes. 2015 ; Vol. 1848, No. 2. pp. 422-432.

Akimova, A. V. ; Rychkov, G. N. ; Grin, M. A. ; Filippova, N. A. ; Golovina, G. V. ; Durandin, N. A. ; Vinogradov, A. M. ; Kokrashvili, T. A. ; Mironov, A. F. ; Shtil, A. A. ; Kuzmin, V. A. / Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives. In: ACTA NATURAE. 2015 ; Vol. 7, No. 1. pp. 109-116.

Rahmatallah, Yasir ; Emmert-Streib, Frank ; Glazko, Galina. / Comparative evaluation of gene set analysis approaches for RNA-Seq data. In: BMC Bioinformatics. 2014 ; Vol. 15, No. 1.

Takala, Heikki ; Lehtivuori, Heli ; Hammarén, Henrik ; Hytönen, Vesa P. ; Ihalainen, Janne A. / Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome. In: Biochemistry. 2014 ; Vol. 53, No. 45. pp. 7076-7085.

Deng, Yang ; Alicea-Velázquez, Nilda L. ; Bannwarth, Ludovic ; Lehtonen, Soili I. ; Boggon, Titus J. ; Cheng, Heung Chin ; Hytönen, Vesa P. ; Turk, Benjamin E. / Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays. In: Journal of Proteome Research. 2014 ; Vol. 13, No. 10. pp. 4339-4346.

Spencer, C. Ian ; Baba, Shiro ; Nakamura, Kenta ; Hua, Ethan A. ; Sears, Marie A F ; Fu, Chi Cheng ; Zhang, Jianhua ; Balijepalli, Sadguna ; Tomoda, Kiichiro ; Hayashi, Yohei ; Lizarraga, Paweena ; Wojciak, Julianne ; Scheinman, Melvin M. ; Aalto-Setälä, Katriina ; Makielski, Jonathan C. ; January, Craig T. ; Healy, Kevin E. ; Kamp, Timothy J. ; Yamanaka, Shinya ; Conklin, Bruce R. / Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. In: Stem Cell Reports. 2014 ; Vol. 3, No. 2. pp. 269-281.

Raitoharju, Emma ; Seppälä, Ilkka ; Oksala, Niku ; Lyytikäinen, Leo Pekka ; Raitakari, Olli ; Viikari, Jorma ; Ala-Korpela, Mika ; Soininen, Pasi ; Kangas, Antti J. ; Waldenberger, Melanie ; Klopp, Norman ; Illig, Thomas ; Leiviskä, Jaana ; Loo, Britt Marie ; Hutri-Kähönen, Nina ; Kähönen, Mika ; Laaksonen, Reijo ; Lehtimäki, Terho. / Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study. In: Molecular and Cellular Endocrinology. 2014 ; Vol. 391, No. 1-2. pp. 41-49.

Koskela, Jenni E. ; Liljeström, Ville ; Lim, Jongdoo ; Simanek, Eric E. ; Ras, Robin H A ; Priimagi, Arri ; Kostiainen, Mauri A. / Light-fuelled transport of large dendrimers and proteins. In: Journal of the American Chemical Society. 2014 ; Vol. 136, No. 19. pp. 6850-6853.

Kokkola, Tarja ; Suuronen, Tiina ; Molnár, Ferdinand ; Määttä, Juha ; Salminen, Antero ; Jarho, Elina M. ; Lahtela-Kakkonen, Maija. / AROS has a context-dependent effect on SIRT1. In: FEBS Letters. 2014 ; Vol. 588, No. 9. pp. 1523-1528.

Tripathi, Shailesh ; Dehmer, Matthias ; Emmert-Streib, Frank. / NetBioV : An R package for visualizing large network data in biology and medicine. In: Bioinformatics. 2014 ; Vol. 30, No. 19. pp. 2834-2836.

Mikhailova, Alexandra ; Ilmarinen, Tanja ; Uusitalo, Hannu ; Skottman, Heli. / Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells. In: Stem Cell Reports. 2014 ; Vol. 2, No. 2. pp. 219-231.

Rahmatallah, Yasir ; Emmert-Streib, Frank ; Glazko, Galina. / Gene Sets Net Correlations Analysis (GSNCA) : A multivariate differential coexpression test for gene sets. In: Bioinformatics. 2014 ; Vol. 30, No. 3. pp. 360-368.

Sorkio, Anni ; Hongisto, Heidi ; Kaarniranta, Kai ; Uusitalo, Hannu ; Juuti-Uusitalo, Kati ; Skottman, Heli. / Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating. In: Tissue Engineering Part A. 2014 ; Vol. 20, No. 3-4. pp. 622-634.

Ji, Junfeng ; Sharma, Vivek ; Qi, Suxia ; Guarch, Meritxell Espino ; Zhao, Ping ; Luo, Zhiwei ; Fan, Wenxia ; Wang, Yu ; Mbabaali, Faridah ; Neculai, Dante ; Esteban, Miguel Angel ; McPherson, John D. ; Batada, Nizar N. / Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. In: Stem Cell Reports. 2014 ; Vol. 2, No. 1. pp. 44-51.

Oksala, Niku K J ; Ekmekçi, F. Güler ; Özsoy, Ergi ; Kirankaya, Şerife ; Kokkola, Tarja ; Emecen, Güzin ; Lappalainen, Jani ; Kaarniranta, Kai ; Atalay, Mustafa. / Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress. In: REDOX BIOLOGY. 2014 ; Vol. 3. pp. 25-28.

Maria Cherian, Reeja ; Gaunitz, Stefan ; Nilsson, Anki ; Liu, Jining ; Karlsson, Niclas G. ; Holgersson, Jan. / Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins. In: GLYCOBIOLOGY. 2014 ; Vol. 24, No. 1. pp. 26-38.

Křížek, Tomáš ; Kubíčková, Anna ; Hladílková, Jana ; Coufal, Pavel ; Heyda, Jan ; Jungwirth, Pavel. / Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts. In: ELECTROPHORESIS. 2014 ; Vol. 35, No. 5. pp. 617-624.

Emmert-Streib, Frank ; de Matos Simoes, Ricardo ; Glazko, Galina ; McDade, Simon ; Haibe-Kains, Benjamin ; Holzinger, Andreas ; Dehmer, Matthias ; Campbell, Frederick. / Functional and genetic analysis of the colon cancer network. In: BMC Bioinformatics. 2014 ; Vol. 15, No. Suppl 6.

Näreoja, Tuomas ; Ebner, Andreas ; Gruber, Hermann J. ; Taskinen, Barbara ; Kienberger, Ferry ; Hänninen, Pekka E. ; Hytönen, Vesa P. ; Hinterdorfer, Peter ; Härmä, Harri. / Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay. In: Analytical and Bioanalytical Chemistry. 2014 ; Vol. 406, No. 2. pp. 493-503.

Akimova, A. V. ; Grin, M. A. ; Golovina, G. V. ; Kokrashvili, T. A. ; Vinogradov, A. M. ; Mironov, A. F. ; Rychkov, G. N. ; Shtil, A. A. ; Kuzmin, V. A. ; Durandin, N. A. / Novel derivatives of bacteriochlorophyll a : Complex formation with albumin and the mechanism of tumor cell photodamage. In: DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 2014 ; Vol. 454, No. 1. pp. 17-20.

Hakala, Tommi ; Sand, Juhani ; Kellokumpu-Lehtinen, Pirkko Liisa ; Huhtala, Heini ; Leinonen, Rauha ; Kholová, Ivana. / Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers. In: European Journal of Clinical Investigation. 2014 ; Vol. 44, No. 9. pp. 825-832.

Emmert-Streib, Frank ; Zhang, Shu Dong ; Hamilton, Peter. / Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. In: Genomics Data. 2014 ; Vol. 2. pp. 37-39.

Häkkinen, Merja R. ; Roine, Antti ; Auriola, Seppo ; Tuokko, Antti ; Veskimäe, Erik ; Keinänen, Tuomo A. ; Lehtimäki, Terho ; Oksala, Niku ; Vepsäläinen, Jouko. / Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS. In: JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2013 ; Vol. 941. pp. 81-89.

Stirnemann, Guillaume ; Wernersson, Erik ; Jungwirth, Pavel ; Laage, Damien. / Mechanisms of acceleration and retardation of water dynamics by ions. In: Journal of the American Chemical Society. 2013 ; Vol. 135, No. 32. pp. 11824-11831.

Chen, Jing ; Xi, Jiefeng ; Tian, Yuan ; Bova, George Steven ; Zhang, Hui. / Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. In: Proteomics. 2013 ; Vol. 13, No. 15. pp. 2268-2277.

Diban, Nazely ; Haimi, Suvi ; Bolhuis-Versteeg, Lydia ; Teixeira, Sandra ; Miettinen, Susanna ; Poot, André ; Grijpma, Dirk ; Stamatialis, Dimitrios. / Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering. In: Journal of Membrane Science. 2013 ; Vol. 438. pp. 29-37.

Leppiniemi, Jenni ; Meir, Amit ; Kahkonen, Niklas ; Kukkurainen, Sampo ; Maatta, Juha A. ; Ojanen, Markus ; Janis, Janne ; Kulomaa, Markku S. ; Livnah, Oded ; Hytonen, Vesa P. / The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins. In: PROTEIN SCIENCE. 2013 ; Vol. 22, No. 7. pp. 980-994.

Sharma, Vivek ; Misteli, Tom. / Non-coding RNAs in DNA damage and repair. In: FEBS Letters. 2013 ; Vol. 587, No. 13. pp. 1832-1839.

Tossavainen, Helena ; Helppolainen, Satu H. ; Määttä, Juha A E ; Pihlajamaa, Tero ; Hytönen, Vesa P. ; Kulomaa, Markku S. ; Permi, Perttu. / Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms. In: BIOMOLECULAR NMR ASSIGNMENTS. 2013 ; Vol. 7, No. 1. pp. 35-38.

Poojari, Chetan ; Kukol, Andreas ; Strodel, Birgit. / How the amyloid-β peptide and membranes affect each other : An extensive simulation study. In: Biochimica et Biophysica Acta: Biomembranes. 2013 ; Vol. 1828, No. 2. pp. 327-339.

Shaikh, Saher A. ; Li, Jing ; Enkavi, Giray ; Wen, Po Chao ; Huang, Zhijian ; Tajkhorshid, Emad. / Visualizing functional motions of membrane transporters with molecular dynamics simulations. In: Biochemistry. 2013 ; Vol. 52, No. 4. pp. 569-587.

Diban, Nazely ; Haimi, Suvi ; Bolhuis-Versteeg, Lydia ; Teixeira, Sandra ; Miettinen, Susanna ; Poot, André ; Grijpma, Dirk ; Stamatialis, Dimitrios. / Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. In: Acta Biomaterialia. 2013 ; Vol. 9, No. 5. pp. 6450-6458.

Ylilauri, Mikko ; Mattila, Elina ; Nurminen, Elisa M. ; Käpylä, Jarmo ; Niinivehmas, Sanna P. ; Määttä, Juha A. ; Pentikäinen, Ulla ; Ivaska, Johanna ; Pentikäinen, Olli T. / Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone. In: Biochimica et biophysica acta: proteins and proteomics. 2013 ; Vol. 1834, No. 10. pp. 1988-1997.

Rahmatallah, Y. ; Emmert-Streib, F. ; Glazko, G. / Gene set analysis for self-contained tests : Complex null and specific alternative hypotheses. In: Bioinformatics. 2012 ; Vol. 28, No. 23. pp. 3073-3080.

Jurkiewicz, Piotr ; Olzyńska, Agnieszka ; Cwiklik, Lukasz ; Conte, Elena ; Jungwirth, Pavel ; Megli, Francesco M. ; Hof, Martin. / Biophysics of lipid bilayers containing oxidatively modified phospholipids : Insights from fluorescence and EPR experiments and from MD simulations. In: Biochimica et Biophysica Acta: Biomembranes. 2012 ; Vol. 1818, No. 10. pp. 2388-2402.

Tammela, Teuvo L J. / Endocrine prevention and treatment of prostate cancer. In: Molecular and Cellular Endocrinology. 2012 ; Vol. 360, No. 1-2. pp. 59-67.

Rembert, Kelvin B. ; Paterová, Jana ; Heyda, Jan ; Hilty, Christian ; Jungwirth, Pavel ; Cremer, Paul S. / Molecular mechanisms of ion-specific effects on proteins. In: Journal of the American Chemical Society. 2012 ; Vol. 134, No. 24. pp. 10039-10046.

Sharma, Vivek ; Bala, Ashu ; Deshmukh, Rahul ; Bedi, K. L. ; Sharma, P. L. / Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats. In: PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 2012 ; Vol. 101, No. 2. pp. 239-245.

Jääskeläinen, Tiina ; Makkonen, Harri ; Visakorpi, Tapio ; Kim, Jaehoon ; Roeder, Robert G. ; Palvimo, Jorma J. / Histone H2B ubiquitin ligases RNF20 and RNF40 in androgen signaling and prostate cancer cell growth. In: Molecular and Cellular Endocrinology. 2012 ; Vol. 350, No. 1. pp. 87-98.

Wernersson, Erik ; Heyda, Jan ; Kubíčková, Anna ; Křížek, Tomáš ; Coufal, Pavel ; Jungwirth, Pavel. / Counterion condensation in short cationic peptides : Limiting mobilities beyond the Onsager-Fuoss theory. In: ELECTROPHORESIS. 2012 ; Vol. 33, No. 6. pp. 981-989.

Usvalampi, Anne ; Turunen, Ossi ; Valjakka, Jarkko ; Pastinen, Ossi ; Leisola, Matti ; Nyyssölä, Antti. / Production of l-xylose from l-xylulose using Escherichia coli l-fucose isomerase. In: ENZYME AND MICROBIAL TECHNOLOGY. 2012 ; Vol. 50, No. 1. pp. 71-76.

Sarkanen, Jertta Riina ; Kaila, Ville ; Mannerström, Bettina ; Räty, Sari ; Kuokkanen, Hannu ; Miettinen, Susanna ; Ylikomi, Timo. / Human adipose tissue extract induces angiogenesis and adipogenesis in vitro. In: Tissue Engineering Part A. 2012 ; Vol. 18, No. 1-2. pp. 17-25.

Jurkiewicz, P. ; Cwiklik, L. ; Jungwirth, P. ; Hof, M. / Lipid hydration and mobility : An interplay between fluorescence solvent relaxation experiments and molecular dynamics simulations. In: Biochimie. 2012 ; Vol. 94, No. 1. pp. 26-32.

Tirkkonen, L. ; Haimi, Suvi ; Huttunen, S. ; Wolff, J. ; Pirhonen, E. ; Sándor, G. K. ; Miettinen, S. / Osteogenic medium is superior to growth factors in differentiation of human adipose stem cells towards boneforming cells in 3D culture. In: European Cells and Materials. 2012 ; Vol. 25. pp. 144-158.

Grönholm, Juha ; Vanhatupa, Sari ; Ungureanu, Daniela ; Väliaho, Jouni ; Laitinen, Tuomo ; Valjakka, Jarkko ; Silvennoinen, Olli. / Structure-function analysis indicates that sumoylation modulates DNA-binding activity of STAT1. In: BMC BIOCHEMISTRY. 2012 ; Vol. 13, No. 1.

Mueller, Laurin A. J. ; Kugler, Karl G. ; Graber, Armin ; Emmert-Streib, Frank ; Dehmer, Matthias. / Structural Measures for Network Biology Using QuACN. In: BMC Bioinformatics. 2011 ; Vol. 12, No. 1.

Tevyashova, Anna N. ; Shtil, Alexander A. ; Olsufyeva, Eugenia N. ; Luzikov, Yury N. ; Reznikova, Marina I. ; Dezhenkova, Lyubov G. ; Isakova, Elena B. ; Bukhman, Vladimir M. ; Durandin, Nikita A. ; Vinogradov, Alexander M. ; Kuzmin, Vladimir A. ; Preobrazhenskaya, Maria N. / Modification of olivomycin A at the side chain of the aglycon yields the derivative with perspective antitumor characteristics. In: BIOORGANIC AND MEDICINAL CHEMISTRY. 2011 ; Vol. 19, No. 24. pp. 7387-7393.

Heger, Michal ; Salles, Isabelle I. ; Bezemer, Rick ; Cloos, Martijn A. ; Mordon, Serge R. ; Bégu, Sylvie ; Deckmyn, Hans ; Beek, Johan F. / Laser-induced primary and secondary hemostasis dynamics and mechanisms in relation to selective photothermolysis of port wine stains. In: JOURNAL OF DERMATOLOGICAL SCIENCE. 2011 ; Vol. 63, No. 3. pp. 139-147.

Sharma, Vivek ; Wikström, Mårten ; Kaila, Ville R I. / Stabilization of the peroxy intermediate in the oxygen splitting reaction of cytochrome cbb3. In: Biochimica et Biophysica Acta: Bioenergetics. 2011 ; Vol. 1807, No. 7. pp. 813-818.

Yu, Guoqiang ; Zhang, Bai ; Bova, G. Steven ; Xu, Jianfeng ; Shih, Ie Ming ; Wang, Yue. / BACOM : In silico detection of genomic deletion types and correction of normal cell contamination in copy number data. In: Bioinformatics. 2011 ; Vol. 27, No. 11. pp. 1473-1480.

Heikkilä, Eija ; Ristola, Mervi ; Havana, Marika ; Jones, Nina ; Holthöfer, Harry ; Lehtonen, Sanna. / Trans-interaction of nephrin and Neph1/Neph3 induces cell adhesion that associates with decreased tyrosine phosphorylation of nephrin. In: BIOCHEMICAL JOURNAL. 2011 ; Vol. 435, No. 3. pp. 619-628.

Auer, Sanna ; Nirschl, Martin ; Schreiter, Matthias ; Vikholm-Lundin, Inger. / Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators. In: Analytical and Bioanalytical Chemistry. 2011 ; Vol. 400, No. 5. pp. 1387-1396.

Kaila, Ville R I ; Sharma, Vivek ; Wikström, Mårten. / The identity of the transient proton loading site of the proton-pumping mechanism of cytochrome c oxidase. In: Biochimica et Biophysica Acta: Bioenergetics. 2011 ; Vol. 1807, No. 1. pp. 80-84.

Dantelle, G. ; Slablab, A. ; Rondin, L. ; Lainé, F. ; Carrel, F. ; Bergonzo, Ph. ; Perruchas, S. ; Gacoin, T. ; Treussart, F. ; Roch, J. F. / Efficient production of NV colour centres in nanodiamonds using high-energy electron irradiation. In: Journal of Luminescence. 2010 ; Vol. 130, No. 9. pp. 1655-1658.

Altay, Gökmen ; Emmert-Streib, Frank. / Revealing differences in gene network inference algorithms on the network level by ensemble methods. In: Bioinformatics. 2010 ; Vol. 26, No. 14. pp. 1738-1744.

Kanninen, L. ; Jokinen, N. ; Lahtonen, K. ; Jussila, P. ; Ali-Löytty, H. ; Hirsimäki, M. ; Leppiniemi, J. ; Hytönen, V. ; Kulomaa, M. ; Ahola, N. ; Paakinaho, K. ; Kellomäki, M. ; Valden, M. / Surface science analysis and surface modification methods for biomaterials research. In: European Cells and Materials. 2010 ; Vol. 20, No. SUPPL. 3. pp. 133.

Glazko, Galina V. ; Emmert-Streib, Frank. / Unite and conquer : Univariate and multivariate approaches for finding differentially expressed gene sets. In: Bioinformatics. 2009 ; Vol. 25, No. 18. pp. 2348-2354.

Dehmer, Matthias ; Emmert-Streib, Frank. / Structural information content of networks : Graph entropy based on local vertex functionals. In: Computational Biology and Chemistry. 2008 ; Vol. 32, No. 2. pp. 131-138.

Einola, Juha Kalle M ; Kettunen, Riitta H. ; Rintala, Jukka A. / Responses of methane oxidation to temperature and water content in cover soil of a boreal landfill. In: Soil Biology and Biochemistry. 2007 ; Vol. 39, No. 5. pp. 1156-1164.

Lokshina, L. Y. ; Vavilin, V. A. ; Salminen, E. ; Rintala, J. / Modeling of anaerobic degradation of solid slaughterhouse waste : Inhibition effects of long-chain fatty acids or ammonia. In: Applied Biochemistry and Biotechnology. 2003 ; Vol. 109, No. 1-3. pp. 15-32.

Tois, Jan ; Franzén, Robert ; Aitio, Olli ; Huikko, Katri ; Taskinen, Jyrki. / Preparation of 5-substituted 2-carboxyindoles on solid support. In: Tetrahedron Letters. 2000 ; Vol. 41, No. 14. pp. 2443-2446.

Franzén, Robert G. / Utilization of Grignard reagents in solid-phase synthesis : A review of the literature. In: Tetrahedron. 2000 ; Vol. 56, No. 5. pp. 685-691.

Annila, Arto ; Lehtimäki, Jaana ; Mattila, Kimmo ; Eriksson, John E. ; Sivonen, Kaarina ; Rantala, Tapio T. ; Drakenberg, Torbjörn. / Solution structure of nodularin : An inhibitor of serine/threonine- specific protein phosphatases. In: Journal of Biological Chemistry. 1996 ; Vol. 271, No. 28. pp. 16695-16702.

Franzén, Robert ; Kronberg, Leif. / Synthesis of chlorinated 5-hydroxy 4-methyl-2(5H)-furanones and mucochloric acid. In: Tetrahedron Letters. 1995 ; Vol. 36, No. 22. pp. 3905-3908.