Statistical evaluation of barkhausen noise testing (BNT) for ground samples. / Tomkowski, Robert; Sorsa, Aki; Santa-Aho, Suvi; Lundin, Per; Vippola, Minnamari.

In: Sensors (Switzerland), Vol. 19, No. 21, 4716, 01.11.2019.

Research output: Contribution to journalArticleScientificpeer-review

Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission. / Saegusa, Toshiyuki; Sakai, Hayato; Nagashima, Hiroki; Kobori, Yasuhiro; Tkachenko, Nikolai V.; Hasobe, Taku.

In: Journal of the American Chemical Society, Vol. 141, No. 37, 18.09.2019, p. 14720-14727.

Research output: Contribution to journalArticleScientificpeer-review

An efficient auxin-inducible degron system with low basal degradation in human cells. / Li, Shiqian; Prasanna, Xavier; Salo, Veijo T.; Vattulainen, Ilpo; Ikonen, Elina.

In: Nature Methods, Vol. 16, No. 9, 01.09.2019, p. 866-869.

Research output: Contribution to journalArticleScientificpeer-review

Behavior of the DPH fluorescence probe in membranes perturbed by drugs. / Poojari, Chetan; Wilkosz, Natalia; Lira, Rafael B.; Dimova, Rumiana; Jurkiewicz, Piotr; Petka, Rafał; Kepczynski, Mariusz; Róg, Tomasz.

In: Chemistry and Physics of Lipids, Vol. 223, 104784, 01.09.2019.

Research output: Contribution to journalArticleScientificpeer-review

Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels. / Wang, Shujiang; Nawale, Ganesh N.; Oommen, Oommen P.; Hilborn, Jöns; Varghese, Oommen P.

In: Polymer Chemistry, Vol. 10, No. 31, 21.08.2019, p. 4322-4327.

Research output: Contribution to journalArticleScientificpeer-review

Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications. / Pitkänen, S.; Paakinaho, K.; Pihlman, H.; Ahola, N.; Hannula, M.; Asikainen, S.; Manninen, M.; Morelius, M.; Keränen, P.; Hyttinen, J.; Kellomäki, M.; Laitinen-Vapaavuori, O.; Miettinen, S.

In: European cells & materials, Vol. 38, 05.08.2019, p. 35-50.

Research output: Contribution to journalArticleScientificpeer-review

An architectural understanding of natural sway frequencies in trees. / Jackson, T.; Shenkin, A.; Moore, J.; Bunce, A.; van Emmerik, T.; Kane, B.; Burcham, D.; James, K.; Selker, J.; Calders, K.; Origo, N.; Disney, M.; Burt, A.; Wilkes, P.; Raumonen, P.; Gonzalez de Tanago Menaca, J.; Lau, A.; Herold, M.; Goodman, R. C.; Fourcaud, T.; Malhi, Y.

In: Journal of the Royal Society. Interface, Vol. 16, No. 155, 28.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Methods for simultaneous robot-world-hand–eye calibration : A comparative study. / Ali, Ihtisham; Suominen, Olli; Gotchev, Atanas; Morales, Emilio Ruiz.

In: Sensors (Switzerland), Vol. 19, No. 12, 2837, 02.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons. / Habib, Mohsin; Serebryannikov, Andriy E.; Caglayan, Humeyra; Vandenbosch, Guy A.E.; Ozbay, Ekmel.

In: Plasmonics, Vol. 14, No. 3, 06.2019, p. 721-729.

Research output: Contribution to journalArticleScientificpeer-review

Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current. / Kekonen, Atte; Bergelin, Mikael; Johansson, Max; Kumar Joon, Narender; Bobacka, Johan; Viik, Jari.

In: Sensors, Vol. 19, No. 11, 31.05.2019.

Research output: Contribution to journalArticleScientificpeer-review

Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution. / Kerst, Thomas; Malmbeck, Rikard; lal Banik, Nidhu L.; Toivonen, Juha.

In: Sensors (Switzerland), Vol. 19, No. 7, 1602, 01.04.2019.

Research output: Contribution to journalArticleScientificpeer-review

Positioning information privacy in intelligent transportation systems : An overview and future perspective. / Ometov, Aleksandr; Bezzateev, Sergey; Davydov, Vadim; Shchesniak, Anna; Masek, Pavel; Lohan, Elena Simona; Koucheryavy, Yevgeni.

In: Sensors, Vol. 19, No. 7, 1603, 01.04.2019.

Research output: Contribution to journalArticleScientificpeer-review

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. / Liimatainen, Kaisa; Kananen, Lauri; Latonen, Leena; Ruusuvuori, Pekka.

In: BMC Bioinformatics, Vol. 20, No. 1, 80, 15.02.2019.

Research output: Contribution to journalArticleScientificpeer-review

Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression. / Startceva, Sofia; Kandavalli, Vinodh K.; Visa, Ari; Ribeiro, Andre S.

In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1862, No. 2, 01.02.2019, p. 119-128.

Research output: Contribution to journalArticleScientificpeer-review

Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis. / Ylä-Outinen, Laura; Tanskanen, Jarno M.A.; Kapucu, Fikret E.; Hyysalo, Anu; Hyttinen, Jari A.K.; Narkilahti, Susanna.

In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, 2019. p. 299-329 (Advances in Neurobiology; Vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

SCIP : a single-cell image processor toolbox. / Martins, Leonardo; Neeli-Venkata, Ramakanth; Oliveira, Samuel M.D.; Häkkinen, Antti; Ribeiro, Andre S.; Fonseca, José M.

In: Bioinformatics, Vol. 34, No. 24, 15.12.2018, p. 4318-4320.

Research output: Contribution to journalArticleScientificpeer-review

M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components. / Rinne, Jukka; Keskinen, Jari; Berger, Paul R.; Lupo, Donald; Valkama, Mikko.

In: Sensors (Basel, Switzerland), Vol. 18, No. 11, 16.11.2018.

Research output: Contribution to journalArticleScientificpeer-review

Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters. / Chevrier, Daniel M.; Raich, Lluís; Rovira, Carme; Das, Anindita; Luo, Zhentao; Yao, Qiaofeng; Chatt, Amares; Xie, Jianping; Jin, Rongchao; Akola, Jaakko; Zhang, Peng.

In: Journal of the American Chemical Society, Vol. 140, No. 45, 14.11.2018, p. 15430-15436.

Research output: Contribution to journalArticleScientificpeer-review

How to minimize dye-induced perturbations while studying biomembrane structure and dynamics : PEG linkers as a rational alternative. / Mobarak, Edouard; Javanainen, Matti; Kulig, Waldemar; Honigmann, Alf; Sezgin, Erdinc; Aho, Noora; Eggeling, Christian; Rog, Tomasz; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta - Biomembranes, Vol. 1860, No. 11, 11.2018, p. 2436-2445.

Research output: Contribution to journalArticleScientificpeer-review

Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology. / Calderón-Garcidueñas, Lilian; González-Maciel, Angélica; Reynoso-Robles, Rafael; Kulesza, Randy J.; Mukherjee, Partha S.; Torres-Jardón, Ricardo; Rönkkö, Topi; Doty, Richard L.

In: Environmental Research, Vol. 166, 01.10.2018, p. 348-362.

Research output: Contribution to journalArticleScientificpeer-review

Comparative analysis of tissue reconstruction algorithms for 3D histology. / Kartasalo, Kimmo; Latonen, Leena; Vihinen, Jorma; Visakorpi, Tapio; Nykter, Matti; Ruusuvuori, Pekka.

In: Bioinformatics, Vol. 34, No. 17, 01.09.2018, p. 3013-3021.

Research output: Contribution to journalArticleScientificpeer-review

Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. / Owen, Michael C.; Kulig, Waldemar; Poojari, Chetan; Rog, Tomasz; Strodel, Birgit.

In: Biochimica et Biophysica Acta - Biomembranes, Vol. 1860, No. 9, 09.2018, p. 1709-1720.

Research output: Contribution to journalArticleScientificpeer-review

Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra. / Pirhonen, Mikko; Peltokangas, Mikko; Vehkaoja, Antti.

In: Sensors, Vol. 18, No. 6, 1693, 01.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Evaluation of dry electrodes in canine heart rate monitoring. / Virtanen, Juhani; Somppi, Sanni; Törnqvist, Heini; Jeyhani, Vala; Fiedler, Patrique; Gizatdinova, Yulia; Majaranta, Päivi; Väätäjä, Heli; Cardó, Anna Valldeoriola; Lekkala, Jukka; Tuukkanen, Sampo; Surakka, Veikko; Vainio, Outi; Vehkaoja, Antti.

In: Sensors, Vol. 18, No. 6, 1757, 01.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp. / George, Lijo; Hiltunen, Arto; Santala, Ville; Efimov, Alexander.

In: Journal of Inorganic Biochemistry, Vol. 183, 01.06.2018, p. 94-100.

Research output: Contribution to journalArticleScientificpeer-review

Non-intersecting leaf insertion algorithm for tree structure models. / Åkerblom, Markku; Raumonen, Pasi; Casella, Eric; Disney, Mathias I.; Danson, F. Mark; Gaulton, Rachel; Schofield, Lucy A.; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170045, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Uncertainty in multispectral lidar signals caused by incidence angle effects. / Kaasalainen, Sanna; Åkerblom, Markku; Nevalainen, Olli; Hakala, Teemu; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170033, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Weighing trees with lasers : Advances, challenges and opportunities. / Disney, M. I.; Boni Vicari, M.; Burt, A.; Calders, K.; Lewis, S. L.; Raumonen, P.; Wilkes, P.

In: Interface Focus, Vol. 8, No. 2, 20170048, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells. / Karvinen, Jennika; Joki, Tiina; Ylä-Outinen, Laura; Koivisto, Janne T.; Narkilahti, Susanna; Kellomäki, Minna.

In: Reactive and Functional Polymers, Vol. 124, 01.03.2018, p. 29-39.

Research output: Contribution to journalArticleScientificpeer-review

An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band. / Mehrang, Saeed; Pietilä, Julia; Korhonen, Ilkka.

In: Sensors, Vol. 18, No. 2, 613, 22.02.2018.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism for inhibition of twinfilin by phosphoinositides. / Hakala, Markku; Kalimeri, Maria; Enkavi, Giray; Vattulainen, Ilpo; Lappalainen, Pekka.

In: Journal of Biological Chemistry, Vol. 293, No. 13, 01.01.2018, p. 4818-4829.

Research output: Contribution to journalArticleScientificpeer-review

A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. / Tienaho, Jenni; Poikulainen, Emmi; Sarjala, Tytti; Muilu-Mäkelä, Riina; Santala, Ville; Karp, Matti.

In: Photochemistry and Photobiology, Vol. 94, No. 6, 2018, p. 1273-1280.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases. / Ojansivu, M.; Wang, X.; Hyväri, L.; Kellomäki, M.; Hupa, L.; Vanhatupa, S.; Miettinen, S.

In: European Cells and Materials, Vol. 35, 2018, p. 53-71.

Research output: Contribution to journalArticleScientificpeer-review

Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor : Experimental and artificial neural network model analysis. / Khanongnuch, Ramita; Di Capua, Francesco; Lakaniemi, Aino-Maija; Rene, Eldon R.; Lens, Piet N.L.

In: Process Biochemistry, Vol. 68, 2018, p. 171-181.

Research output: Contribution to journalArticleScientificpeer-review

Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer. / Rokade, Shalaka S.; Joshi, Komal A.; Mahajan, Ketakee; Patil, Saniya; Tomar, Geetanjali; Dubal, Dnyanesh S.; Parihar, Vijay Singh; Kitture, Rohini; Bellare, Jayesh R.; Ghosh, Sougata.

In: Bioinorganic Chemistry and Applications, Vol. 2018, 4924186, 2018.

Research output: Contribution to journalArticleScientificpeer-review

Azopolymer photopatterning for directional control of angiogenesis. / Fedele, Chiara; De Gregorio, Maria; Netti, Paolo A.; Cavalli, Silvia; Attanasio, Chiara.

In: Acta Biomaterialia, Vol. 63, 01.11.2017, p. 317-325.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different coating techniques on the properties of FucoPol films. / Ferreira, Ana R.V.; Haapanen, Janne; Mäkelä, Jyrki M.; Bratvold, Jon E.; Nilsen, Ola; Tuominen, Mikko; Alves, Vítor D.; Coelhoso, Isabel M.

In: International Journal of Biological Macromolecules, Vol. 103, 01.10.2017, p. 268-274.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of Aβ Amyloid Growth and Toxicity by Silybins : The Crucial Role of Stereochemistry. / Sciacca, Michele F.M.; Romanucci, Valeria; Zarrelli, Armando; Monaco, Irene; Lolicato, Fabio; Spinella, Natalia; Galati, Clelia; Grasso, Giuseppe; D'Urso, Luisa; Romeo, Margherita; Diomede, Luisa; Salmona, Mario; Bongiorno, Corrado; Di Fabio, Giovanni; La Rosa, Carmelo; Milardi, Danilo.

In: ACS Chemical Neuroscience, Vol. 8, No. 8, 16.08.2017, p. 1767-1778.

Research output: Contribution to journalArticleScientificpeer-review

sgnesR : An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters. / Tripathi, Shailesh; Lloyd-Price, Jason; Ribeiro, Andre; Yli-Harja, Olli; Dehmer, Matthias; Emmert-Streib, Frank.

In: BMC Bioinformatics, Vol. 18, No. 1, 325, 04.07.2017.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics of a True Moving Bed separation process : Linear model identification and advanced process control. / Nogueira, Idelfonso B.R.; Ribeiro, Ana M.; Martins, Márcio A.F.; Rodrigues, Alírio E.; Koivisto, Hannu; Loureiro, José M.

In: Journal of Chromatography A, Vol. 1504, 30.06.2017.

Research output: Contribution to journalArticleScientificpeer-review

Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. / Mokkila, Sini; Postila, Pekka A.; Rissanen, Sami; Juhola, Hanna; Vattulainen, Ilpo; Róg, Tomasz.

In: ACS Chemical Neuroscience, Vol. 8, No. 6, 21.06.2017, p. 1242-1250.

Research output: Contribution to journalArticleScientificpeer-review

Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation. / Manna, Moutusi; Javanainen, Matti; Martinez-Seara Monne, Hector; Gabius, Hans-Joachim; Rog, Tomasz; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1859, No. 5, 01.05.2017, p. 870-878.

Research output: Contribution to journalArticleScientificpeer-review

Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. / Kahraman, Mehmet; Ozbay, Ayse; Yuksel, Handan; Solmaz, Ramazan; Demir, Baran; Caglayan, Humeyra.

In: Plasmonics, 05.04.2017, p. 1-11.

Research output: Contribution to journalArticleScientificpeer-review

Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging. / Higashino, Tomohiro; Nakatsuji, Hirotaka; Fukuda, Ryosuke; Okamoto, Haruki; Imai, Hirohiko; Matsuda, Tetsuya; Tochio, Hidehito; Shirakawa, Masahiro; Tkachenko, Nikolai V.; Hashida, Mitsuru; Murakami, Tatsuya; Imahori, Hiroshi.

In: ChemBioChem, Vol. 18, No. 10, 24.03.2017, p. 951-959.

Research output: Contribution to journalArticleScientificpeer-review

Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition. / Bilkova, Eva; Pleskot, Roman; Rissanen, Sami; Sun, Simou; Czogalla, Aleksander; Cwiklik, Lukasz; Róg, Tomasz; Vattulainen, Ilpo; Cremer, Paul S.; Jungwirth, Pavel; Coskun, Ünal.

In: Journal of the American Chemical Society, Vol. 139, No. 11, 22.03.2017, p. 4019-4024.

Research output: Contribution to journalArticleScientificpeer-review

Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains. / Milani, Roberto; Houbenov, Nikolay; Fernandez-Palacio, Francisco; Cavallo, Gabriella; Luzio, Alessandro; Haataja, Johannes; Giancane, Gabriele; Saccone, Marco; Priimägi, Arri; Metrangolo, Pierangelo; Ikkala, Olli.

In: CheM, Vol. 2, No. 3, 09.03.2017, p. 417-426.

Research output: Contribution to journalArticleScientificpeer-review

Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ : Novel Mechanisms of Function and Pathogenesis. / Euro, Liliya; Haapanen, Outi; Róg, Tomasz; Vattulainen, Ilpo; Suomalainen, Anu; Sharma, Vivek.

In: Biochemistry, Vol. 56, No. 9, 07.03.2017, p. 1227-1238.

Research output: Contribution to journalArticleScientificpeer-review

Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells. / Balanta, M. A G; Orsi Gordo, V.; Carvalho, A. R H; Puustinen, J.; Alghamdi, H. M.; Henini, M.; Galeti, H. V A; Guina, M.; Galvão Gobato, Y.

In: Journal of Luminescence, Vol. 182, 02.2017, p. 49-52.

Research output: Contribution to journalArticleScientificpeer-review

GSAR : Bioconductor package for Gene Set analysis in R. / Rahmatallah, Yasir; Zybailov, Boris; Emmert-Streib, Frank; Glazko, Galina.

In: BMC Bioinformatics, Vol. 18, No. 1, 61, 24.01.2017.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle. / Grabon, Aby; Orłowski, Adam; Tripathi, Ashutosh; Vuorio, Joni; Javanainen, Matti; Róg, Tomasz; Lönnfors, Max; McDermott, Mark I.; Siebert, Garland; Somerharju, Pentti; Vattulainen, Ilpo; Bankaitis, Vytas A.

In: Journal of Biological Chemistry, Vol. 292, No. 35, 2017, p. 14438-14455.

Research output: Contribution to journalArticleScientificpeer-review

Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex. / Lahbib, Ikram; Valkonen, Arto; Rzaigui, Mohamed; Smirani, Wajda.

In: Journal of Cluster Science, Vol. 28, No. 4, 2017, p. 2239–2252.

Research output: Contribution to journalArticleScientificpeer-review

SamExploreR : Exploring reproducibility and robustness of RNA-seq results based on SAM files. / Stupnikov, Alexey; Tripathi, Shailesh; De Matos Simoes, Ricardo; McArt, Darragh; Salto-Tellez, Manuel; Glazko, Galina; Dehmer, Matthias; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 32, No. 21, 01.11.2016, p. 3345-3347.

Research output: Contribution to journalArticleScientificpeer-review

Effects of σ factor competition are promoter initiation kinetics dependent. / Kandavalli, Vinodh K.; Tran, Huy; Ribeiro, Andre S.

In: Biochimica et Biophysica Acta: Gene Regulatory Mechanisms, Vol. 1859, No. 10, 01.10.2016, p. 1281-1288.

Research output: Contribution to journalArticleScientificpeer-review

Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1. / Kuleta, Patryk; Sarewicz, Marcin; Postila, Pekka; Róg, Tomasz; Osyczka, Artur.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1857, No. 10, 01.10.2016, p. 1661-1668.

Research output: Contribution to journalArticleScientificpeer-review

Lipid membranes : Theory and simulations bridged to experiments. / Vattulainen, Ilpo; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 01.10.2016, p. 2251-2253.

Research output: Contribution to journalEditorialScientificpeer-review

Efficient preparation and analysis of membrane and membrane protein systems. / Javanainen, Matti; Martinez-Seara, Hector.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 10.2016, p. 2468-2482.

Research output: Contribution to journalArticleScientificpeer-review

Functionalized lipids and surfactants for specific applications. / Kepczynski, Mariusz; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 10.2016, p. 2362-2379.

Research output: Contribution to journalArticleScientificpeer-review

Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. / Kaurola, Petri; Sharma, Vivek; Vonk, Amanda; Vattulainen, Ilpo; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 9, 01.09.2016, p. 2116-2122.

Research output: Contribution to journalArticleScientificpeer-review

The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. / Sharma, Vivek; Wikström, Mårten.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1857, No. 8, 08.2016, p. 1111-1115.

Research output: Contribution to journalArticleScientificpeer-review

Robust statistical approaches for RSS-based floor detection in indoor localization. / Razavi, Alireza; Valkama, Mikko; Lohan, Elena Simona.

In: Sensors, Vol. 16, No. 6, 793, 01.06.2016.

Research output: Contribution to journalArticleScientificpeer-review

Characterizing rate limiting steps in transcription from RNA production times in live cells. / Häkkinen, Antti; Ribeiro, Andre S.

In: Bioinformatics, Vol. 32, No. 9, 01.05.2016, p. 1346-1352.

Research output: Contribution to journalArticleScientificpeer-review

Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering. / Vuornos, Kaisa; Björninen, Miina; Talvitie, Elina; Paakinaho, Kaarlo; Kellomäki, Minna; Huhtala, Heini; Miettinen, Susanna; Seppänen-Kaijansinkko, Riitta; Haimi, Suvi.

In: Tissue Engineering Part A, Vol. 22, No. 5-6, 01.03.2016, p. 513-523.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol oxidation products and their biological importance. / Kulig, Waldemar; Cwiklik, Lukasz; Jurkiewicz, Piotr; Rog, Tomasz; Vattulainen, Ilpo.

In: Chemistry and Physics of Lipids, Vol. 199, 2016, p. 144-160.

Research output: Contribution to journalArticleScientificpeer-review

Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol. / Teppola, Heidi; Sarkanen, Jertta Riina; Jalonen, Tuula O.; Linne, Marja-Leena.

In: Neurochemical Research, Vol. 41, No. 4, 2016, p. 731-747.

Research output: Contribution to journalArticleScientificpeer-review

Non-Brownian diffusion in lipid membranes : Experiments and simulations. / Metzler, R.; Jeon, J. H.; Cherstvy, A. G.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 215, 2016, p. 173–185.

Research output: Contribution to journalReview ArticleScientificpeer-review

Role of charged lipids in membrane structures : Insight given by simulations. / Pöyry, Sanja; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta: Biomembranes, 2016, p. 2322–2333.

Research output: Contribution to journalArticleScientificpeer-review

The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations. / Rog, Tomasz; Koivuniemi, Artturi.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 1, 2016, p. 97-103.

Research output: Contribution to journalArticleScientificpeer-review

Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. / Jia, Li; Sun, Zhonghe; Wu, Xiaolin; Misteli, Tom; Sharma, Vivek.

In: Genomics Data, Vol. 6, 01.12.2015, p. 277-279.

Research output: Contribution to journalArticleScientificpeer-review

Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. / Ravi, Aruna; Luthra, Antriksh; Teixeira, Fernando L.; Berger, Paul R.; Coe, James V.

In: Plasmonics, Vol. 10, No. 6, 01.12.2015, p. 1505-1512.

Research output: Contribution to journalArticleScientificpeer-review

A BRCA1-interacting lncRNA regulates homologous recombination. / Sharma, Vivek; Khurana, Simran; Kubben, Nard; Abdelmohsen, Kotb; Oberdoerffer, Philipp; Gorospe, Myriam; Misteli, Tom.

In: EMBO REPORTS, Vol. 16, No. 11, 01.11.2015, p. 1520-1534.

Research output: Contribution to journalArticleScientificpeer-review

Submolecular Plasticization Induced by Photons in Azobenzene Materials. / Vapaavuori, Jaana; Laventure, Audrey; Bazuin, C. Geraldine; Lebel, Olivier; Pellerin, Christian.

In: Journal of the American Chemical Society, Vol. 137, No. 42, 28.10.2015, p. 13510-13517.

Research output: Contribution to journalArticleScientificpeer-review

Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism. / Ryödi, Essi; Metso, Saara; Jaatinen, Pia; Huhtala, Heini; Saaristo, Rauni; Välimäki, Matti; Auvinen, Anssi.

In: Journal of Clinical Endocrinology and Metabolism, Vol. 100, No. 10, 01.10.2015, p. 3710-3717.

Research output: Contribution to journalArticleScientificpeer-review

Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells. / Sorkio, Anni; Porter, Patrick J.; Juuti-Uusitalo, Kati; Meenan, Brian J.; Skottman, Heli; Burke, George A.

In: Tissue Engineering Part A, Vol. 21, No. 17-18, 01.09.2015, p. 2301-2314.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells. / Ojansivu, Miina; Vanhatupa, Sari; Björkvik, Leena; Häkkänen, Heikki; Kellomäki, Minna; Autio, Reija; Ihalainen, Janne A.; Hupa, Leena; Miettinen, Susanna.

In: Acta Biomaterialia, Vol. 21, 15.07.2015, p. 190-203.

Research output: Contribution to journalArticleScientificpeer-review

A robust AMMI model for the analysis of genotype-by-environment data. / Rodrigues, Paulo C.; Monteiro, Andreia; Lourenço, Vanda M.

In: Bioinformatics, Vol. 32, No. 1, 01.07.2015, p. 58-66.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol under oxidative stress : How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. / Kulig, Waldemar; Olzyńska, Agnieszka; Jurkiewicz, Piotr; Kantola, Anu M.; Komulainen, Sanna; Manna, Moutusi; Pourmousa, Mohsen; Vazdar, Mario; Cwiklik, Lukasz; Rog, Tomasz; Khelashvili, George; Harries, Daniel; Telkki, Ville Veikko; Hof, Martin; Vattulainen, Ilpo; Jungwirth, Pavel.

In: Free Radical Biology and Medicine, Vol. 84, 01.07.2015, p. 30-41.

Research output: Contribution to journalArticleScientificpeer-review

Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation. / Nguyen, Su Duy; Javanainen, Matti; Rissanen, Sami; Zhao, Hongxia; Huusko, Jenni; Kivelä, Annukka M.; Ylä-Herttuala, Seppo; Navab, Mohamad; Fogelman, Alan M.; Vattulainen, Ilpo; Kovanen, Petri T.; Öörni, Katariina.

In: Journal of Lipid Research, Vol. 56, No. 6, 01.06.2015, p. 1206-1221.

Research output: Contribution to journalArticleScientificpeer-review

Using shRNA experiments to validate gene regulatory networks. / Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin.

In: Genomics Data, Vol. 4, 01.06.2015, p. 123-126.

Research output: Contribution to journalArticleScientificpeer-review

Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase. / Sharma, Vivek; Ala-Vannesluoma, Pauliina; Vattulainen, Ilpo; Wikström, Mårten; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1847, No. 8, 17.04.2015, p. 690-697.

Research output: Contribution to journalArticleScientificpeer-review

Multi-stable dynamics of the non-adiabatic repressilator. / Potapov, Ilya; Zhurov, Boris; Volkov, Evgeny.

In: Journal of the Royal Society. Interface, Vol. 12, No. 104, 20141315, 06.03.2015.

Research output: Contribution to journalArticleScientificpeer-review

Oxidation half-reaction of aqueous nucleosides and nucleotides via photoelectron spectroscopy augmented by ab initio calculations. / Schroeder, Christi A.; Pluharová, Eva; Seidel, Robert; Schroeder, William P.; Faubel, Manfred; Slavíçek, Petr; Winter, Bernd; Jungwirth, Pavel; Bradforth, Stephen E.

In: Journal of the American Chemical Society, Vol. 137, No. 1, 14.01.2015, p. 201-209.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. / Häkkinen, Antti; Ribeiro, Andre S.

In: Bioinformatics, Vol. 31, No. 1, 01.01.2015, p. 69-75.

Research output: Contribution to journalArticleScientificpeer-review

Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning. / Lehtonen, Soili I.; Taskinen, Barbara; Ojala, Elina; Kukkurainen, Sampo; Rahikainen, Rolle; Riihimäki, Tiina A.; Laitinen, Olli H.; Kulomaa, Markku S.; Hytönen, Vesa P.

In: Protein Engineering Design and Selection, Vol. 28, No. 1, 2015, p. 23-28.

Research output: Contribution to journalArticleScientificpeer-review

Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate. / Kulig, Waldemar; Jurkiewicz, Piotr; Olzyńska, Agnieszka; Tynkkynen, Joona; Javanainen, Matti; Manna, Moutusi; Rog, Tomasz; Hof, Martin; Vattulainen, Ilpo; Jungwirth, Pavel.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1848, No. 2, 2015, p. 422-432.

Research output: Contribution to journalArticleScientificpeer-review

Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives. / Akimova, A. V.; Rychkov, G. N.; Grin, M. A.; Filippova, N. A.; Golovina, G. V.; Durandin, N. A.; Vinogradov, A. M.; Kokrashvili, T. A.; Mironov, A. F.; Shtil, A. A.; Kuzmin, V. A.

In: ACTA NATURAE, Vol. 7, No. 1, 2015, p. 109-116.

Research output: Contribution to journalArticleScientificpeer-review

Comparative evaluation of gene set analysis approaches for RNA-Seq data. / Rahmatallah, Yasir; Emmert-Streib, Frank; Glazko, Galina.

In: BMC Bioinformatics, Vol. 15, No. 1, 397, 05.12.2014.

Research output: Contribution to journalArticleScientificpeer-review

Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome. / Takala, Heikki; Lehtivuori, Heli; Hammarén, Henrik; Hytönen, Vesa P.; Ihalainen, Janne A.

In: Biochemistry, Vol. 53, No. 45, 18.11.2014, p. 7076-7085.

Research output: Contribution to journalArticleScientificpeer-review

Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays. / Deng, Yang; Alicea-Velázquez, Nilda L.; Bannwarth, Ludovic; Lehtonen, Soili I.; Boggon, Titus J.; Cheng, Heung Chin; Hytönen, Vesa P.; Turk, Benjamin E.

In: Journal of Proteome Research, Vol. 13, No. 10, 03.10.2014, p. 4339-4346.

Research output: Contribution to journalArticleScientificpeer-review

Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. / Spencer, C. Ian; Baba, Shiro; Nakamura, Kenta; Hua, Ethan A.; Sears, Marie A F; Fu, Chi Cheng; Zhang, Jianhua; Balijepalli, Sadguna; Tomoda, Kiichiro; Hayashi, Yohei; Lizarraga, Paweena; Wojciak, Julianne; Scheinman, Melvin M.; Aalto-Setälä, Katriina; Makielski, Jonathan C.; January, Craig T.; Healy, Kevin E.; Kamp, Timothy J.; Yamanaka, Shinya; Conklin, Bruce R.

In: Stem Cell Reports, Vol. 3, No. 2, 12.08.2014, p. 269-281.

Research output: Contribution to journalArticleScientificpeer-review

Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study. / Raitoharju, Emma; Seppälä, Ilkka; Oksala, Niku; Lyytikäinen, Leo Pekka; Raitakari, Olli; Viikari, Jorma; Ala-Korpela, Mika; Soininen, Pasi; Kangas, Antti J.; Waldenberger, Melanie; Klopp, Norman; Illig, Thomas; Leiviskä, Jaana; Loo, Britt Marie; Hutri-Kähönen, Nina; Kähönen, Mika; Laaksonen, Reijo; Lehtimäki, Terho.

In: Molecular and Cellular Endocrinology, Vol. 391, No. 1-2, 25.06.2014, p. 41-49.

Research output: Contribution to journalArticleScientificpeer-review

Light-fuelled transport of large dendrimers and proteins. / Koskela, Jenni E.; Liljeström, Ville; Lim, Jongdoo; Simanek, Eric E.; Ras, Robin H A; Priimagi, Arri; Kostiainen, Mauri A.

In: Journal of the American Chemical Society, Vol. 136, No. 19, 14.05.2014, p. 6850-6853.

Research output: Contribution to journalArticleScientificpeer-review

AROS has a context-dependent effect on SIRT1. / Kokkola, Tarja; Suuronen, Tiina; Molnár, Ferdinand; Määttä, Juha; Salminen, Antero; Jarho, Elina M.; Lahtela-Kakkonen, Maija.

In: FEBS Letters, Vol. 588, No. 9, 02.05.2014, p. 1523-1528.

Research output: Contribution to journalArticleScientificpeer-review

NetBioV : An R package for visualizing large network data in biology and medicine. / Tripathi, Shailesh; Dehmer, Matthias; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 30, No. 19, 02.04.2014, p. 2834-2836.

Research output: Contribution to journalArticleScientificpeer-review

Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells. / Mikhailova, Alexandra; Ilmarinen, Tanja; Uusitalo, Hannu; Skottman, Heli.

In: Stem Cell Reports, Vol. 2, No. 2, 11.02.2014, p. 219-231.

Research output: Contribution to journalArticleScientificpeer-review

Gene Sets Net Correlations Analysis (GSNCA) : A multivariate differential coexpression test for gene sets. / Rahmatallah, Yasir; Emmert-Streib, Frank; Glazko, Galina.

In: Bioinformatics, Vol. 30, No. 3, 01.02.2014, p. 360-368.

Research output: Contribution to journalArticleScientificpeer-review

Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating. / Sorkio, Anni; Hongisto, Heidi; Kaarniranta, Kai; Uusitalo, Hannu; Juuti-Uusitalo, Kati; Skottman, Heli.

In: Tissue Engineering Part A, Vol. 20, No. 3-4, 01.02.2014, p. 622-634.

Research output: Contribution to journalArticleScientificpeer-review

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. / Ji, Junfeng; Sharma, Vivek; Qi, Suxia; Guarch, Meritxell Espino; Zhao, Ping; Luo, Zhiwei; Fan, Wenxia; Wang, Yu; Mbabaali, Faridah; Neculai, Dante; Esteban, Miguel Angel; McPherson, John D.; Batada, Nizar N.

In: Stem Cell Reports, Vol. 2, No. 1, 14.01.2014, p. 44-51.

Research output: Contribution to journalArticleScientificpeer-review

Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress. / Oksala, Niku K J; Ekmekçi, F. Güler; Özsoy, Ergi; Kirankaya, Şerife; Kokkola, Tarja; Emecen, Güzin; Lappalainen, Jani; Kaarniranta, Kai; Atalay, Mustafa.

In: REDOX BIOLOGY, Vol. 3, 01.01.2014, p. 25-28.

Research output: Contribution to journalArticleScientificpeer-review

Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins. / Maria Cherian, Reeja; Gaunitz, Stefan; Nilsson, Anki; Liu, Jining; Karlsson, Niclas G.; Holgersson, Jan.

In: GLYCOBIOLOGY, Vol. 24, No. 1, 01.2014, p. 26-38.

Research output: Contribution to journalArticleScientificpeer-review

Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts. / Křížek, Tomáš; Kubíčková, Anna; Hladílková, Jana; Coufal, Pavel; Heyda, Jan; Jungwirth, Pavel.

In: ELECTROPHORESIS, Vol. 35, No. 5, 2014, p. 617-624.

Research output: Contribution to journalArticleScientificpeer-review

Functional and genetic analysis of the colon cancer network. / Emmert-Streib, Frank; de Matos Simoes, Ricardo; Glazko, Galina; McDade, Simon; Haibe-Kains, Benjamin; Holzinger, Andreas; Dehmer, Matthias; Campbell, Frederick.

In: BMC Bioinformatics, Vol. 15, No. Suppl 6, S6, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay. / Näreoja, Tuomas; Ebner, Andreas; Gruber, Hermann J.; Taskinen, Barbara; Kienberger, Ferry; Hänninen, Pekka E.; Hytönen, Vesa P.; Hinterdorfer, Peter; Härmä, Harri.

In: Analytical and Bioanalytical Chemistry, Vol. 406, No. 2, 2014, p. 493-503.

Research output: Contribution to journalArticleScientificpeer-review

Novel derivatives of bacteriochlorophyll a : Complex formation with albumin and the mechanism of tumor cell photodamage. / Akimova, A. V.; Grin, M. A.; Golovina, G. V.; Kokrashvili, T. A.; Vinogradov, A. M.; Mironov, A. F.; Rychkov, G. N.; Shtil, A. A.; Kuzmin, V. A.; Durandin, N. A.

In: DOKLADY BIOCHEMISTRY AND BIOPHYSICS, Vol. 454, No. 1, 2014, p. 17-20.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers. / Hakala, Tommi; Sand, Juhani; Kellokumpu-Lehtinen, Pirkko Liisa; Huhtala, Heini; Leinonen, Rauha; Kholová, Ivana.

In: European Journal of Clinical Investigation, Vol. 44, No. 9, 2014, p. 825-832.

Research output: Contribution to journalArticleScientificpeer-review

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. / Emmert-Streib, Frank; Zhang, Shu Dong; Hamilton, Peter.

In: Genomics Data, Vol. 2, 2014, p. 37-39.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS. / Häkkinen, Merja R.; Roine, Antti; Auriola, Seppo; Tuokko, Antti; Veskimäe, Erik; Keinänen, Tuomo A.; Lehtimäki, Terho; Oksala, Niku; Vepsäläinen, Jouko.

In: JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, Vol. 941, 15.12.2013, p. 81-89.

Research output: Contribution to journalArticleScientificpeer-review

Mechanisms of acceleration and retardation of water dynamics by ions. / Stirnemann, Guillaume; Wernersson, Erik; Jungwirth, Pavel; Laage, Damien.

In: Journal of the American Chemical Society, Vol. 135, No. 32, 14.08.2013, p. 11824-11831.

Research output: Contribution to journalArticleScientificpeer-review

Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. / Chen, Jing; Xi, Jiefeng; Tian, Yuan; Bova, George Steven; Zhang, Hui.

In: Proteomics, Vol. 13, No. 15, 08.2013, p. 2268-2277.

Research output: Contribution to journalArticleScientificpeer-review

Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering. / Diban, Nazely; Haimi, Suvi; Bolhuis-Versteeg, Lydia; Teixeira, Sandra; Miettinen, Susanna; Poot, André; Grijpma, Dirk; Stamatialis, Dimitrios.

In: Journal of Membrane Science, Vol. 438, 01.07.2013, p. 29-37.

Research output: Contribution to journalArticleScientificpeer-review

The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins. / Leppiniemi, Jenni; Meir, Amit; Kahkonen, Niklas; Kukkurainen, Sampo; Maatta, Juha A.; Ojanen, Markus; Janis, Janne; Kulomaa, Markku S.; Livnah, Oded; Hytonen, Vesa P.

In: PROTEIN SCIENCE, Vol. 22, No. 7, 07.2013, p. 980-994.

Research output: Contribution to journalArticleScientificpeer-review

Non-coding RNAs in DNA damage and repair. / Sharma, Vivek; Misteli, Tom.

In: FEBS Letters, Vol. 587, No. 13, 27.06.2013, p. 1832-1839.

Research output: Contribution to journalReview ArticleScientificpeer-review

Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms. / Tossavainen, Helena; Helppolainen, Satu H.; Määttä, Juha A E; Pihlajamaa, Tero; Hytönen, Vesa P.; Kulomaa, Markku S.; Permi, Perttu.

In: BIOMOLECULAR NMR ASSIGNMENTS, Vol. 7, No. 1, 04.2013, p. 35-38.

Research output: Contribution to journalArticleScientificpeer-review

How the amyloid-β peptide and membranes affect each other : An extensive simulation study. / Poojari, Chetan; Kukol, Andreas; Strodel, Birgit.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1828, No. 2, 02.2013, p. 327-339.

Research output: Contribution to journalArticleScientificpeer-review

Visualizing functional motions of membrane transporters with molecular dynamics simulations. / Shaikh, Saher A.; Li, Jing; Enkavi, Giray; Wen, Po Chao; Huang, Zhijian; Tajkhorshid, Emad.

In: Biochemistry, Vol. 52, No. 4, 29.01.2013, p. 569-587.

Research output: Contribution to journalArticleScientificpeer-review

Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. / Diban, Nazely; Haimi, Suvi; Bolhuis-Versteeg, Lydia; Teixeira, Sandra; Miettinen, Susanna; Poot, André; Grijpma, Dirk; Stamatialis, Dimitrios.

In: Acta Biomaterialia, Vol. 9, No. 5, 2013, p. 6450-6458.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone. / Ylilauri, Mikko; Mattila, Elina; Nurminen, Elisa M.; Käpylä, Jarmo; Niinivehmas, Sanna P.; Määttä, Juha A.; Pentikäinen, Ulla; Ivaska, Johanna; Pentikäinen, Olli T.

In: Biochimica et biophysica acta: proteins and proteomics, Vol. 1834, No. 10, 2013, p. 1988-1997.

Research output: Contribution to journalArticleScientificpeer-review

Gene set analysis for self-contained tests : Complex null and specific alternative hypotheses. / Rahmatallah, Y.; Emmert-Streib, F.; Glazko, G.

In: Bioinformatics, Vol. 28, No. 23, 12.2012, p. 3073-3080.

Research output: Contribution to journalArticleScientificpeer-review

Biophysics of lipid bilayers containing oxidatively modified phospholipids : Insights from fluorescence and EPR experiments and from MD simulations. / Jurkiewicz, Piotr; Olzyńska, Agnieszka; Cwiklik, Lukasz; Conte, Elena; Jungwirth, Pavel; Megli, Francesco M.; Hof, Martin.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1818, No. 10, 10.2012, p. 2388-2402.

Research output: Contribution to journalReview ArticleScientificpeer-review

Endocrine prevention and treatment of prostate cancer. / Tammela, Teuvo L J.

In: Molecular and Cellular Endocrinology, Vol. 360, No. 1-2, 05.09.2012, p. 59-67.

Research output: Contribution to journalReview ArticleScientificpeer-review

Molecular mechanisms of ion-specific effects on proteins. / Rembert, Kelvin B.; Paterová, Jana; Heyda, Jan; Hilty, Christian; Jungwirth, Pavel; Cremer, Paul S.

In: Journal of the American Chemical Society, Vol. 134, No. 24, 20.06.2012, p. 10039-10046.

Research output: Contribution to journalArticleScientificpeer-review

Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats. / Sharma, Vivek; Bala, Ashu; Deshmukh, Rahul; Bedi, K. L.; Sharma, P. L.

In: PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR, Vol. 101, No. 2, 04.2012, p. 239-245.

Research output: Contribution to journalArticleScientificpeer-review

Histone H2B ubiquitin ligases RNF20 and RNF40 in androgen signaling and prostate cancer cell growth. / Jääskeläinen, Tiina; Makkonen, Harri; Visakorpi, Tapio; Kim, Jaehoon; Roeder, Robert G.; Palvimo, Jorma J.

In: Molecular and Cellular Endocrinology, Vol. 350, No. 1, 05.03.2012, p. 87-98.

Research output: Contribution to journalArticleScientificpeer-review

Counterion condensation in short cationic peptides : Limiting mobilities beyond the Onsager-Fuoss theory. / Wernersson, Erik; Heyda, Jan; Kubíčková, Anna; Křížek, Tomáš; Coufal, Pavel; Jungwirth, Pavel.

In: ELECTROPHORESIS, Vol. 33, No. 6, 03.2012, p. 981-989.

Research output: Contribution to journalArticleScientificpeer-review

Production of l-xylose from l-xylulose using Escherichia coli l-fucose isomerase. / Usvalampi, Anne; Turunen, Ossi; Valjakka, Jarkko; Pastinen, Ossi; Leisola, Matti; Nyyssölä, Antti.

In: ENZYME AND MICROBIAL TECHNOLOGY, Vol. 50, No. 1, 05.01.2012, p. 71-76.

Research output: Contribution to journalArticleScientificpeer-review

Human adipose tissue extract induces angiogenesis and adipogenesis in vitro. / Sarkanen, Jertta Riina; Kaila, Ville; Mannerström, Bettina; Räty, Sari; Kuokkanen, Hannu; Miettinen, Susanna; Ylikomi, Timo.

In: Tissue Engineering Part A, Vol. 18, No. 1-2, 01.01.2012, p. 17-25.

Research output: Contribution to journalArticleScientificpeer-review

Lipid hydration and mobility : An interplay between fluorescence solvent relaxation experiments and molecular dynamics simulations. / Jurkiewicz, P.; Cwiklik, L.; Jungwirth, P.; Hof, M.

In: Biochimie, Vol. 94, No. 1, 01.2012, p. 26-32.

Research output: Contribution to journalReview ArticleScientificpeer-review

Osteogenic medium is superior to growth factors in differentiation of human adipose stem cells towards boneforming cells in 3D culture. / Tirkkonen, L.; Haimi, Suvi; Huttunen, S.; Wolff, J.; Pirhonen, E.; Sándor, G. K.; Miettinen, S.

In: European Cells and Materials, Vol. 25, 2012, p. 144-158.

Research output: Contribution to journalArticleScientificpeer-review

Structure-function analysis indicates that sumoylation modulates DNA-binding activity of STAT1. / Grönholm, Juha; Vanhatupa, Sari; Ungureanu, Daniela; Väliaho, Jouni; Laitinen, Tuomo; Valjakka, Jarkko; Silvennoinen, Olli.

In: BMC BIOCHEMISTRY, Vol. 13, No. 1, 20, 2012.

Research output: Contribution to journalArticleScientificpeer-review

Structural Measures for Network Biology Using QuACN. / Mueller, Laurin A. J.; Kugler, Karl G.; Graber, Armin; Emmert-Streib, Frank; Dehmer, Matthias.

In: BMC Bioinformatics, Vol. 12, No. 1, 492, 24.12.2011.

Research output: Contribution to journalArticleScientificpeer-review

Modification of olivomycin A at the side chain of the aglycon yields the derivative with perspective antitumor characteristics. / Tevyashova, Anna N.; Shtil, Alexander A.; Olsufyeva, Eugenia N.; Luzikov, Yury N.; Reznikova, Marina I.; Dezhenkova, Lyubov G.; Isakova, Elena B.; Bukhman, Vladimir M.; Durandin, Nikita A.; Vinogradov, Alexander M.; Kuzmin, Vladimir A.; Preobrazhenskaya, Maria N.

In: BIOORGANIC AND MEDICINAL CHEMISTRY, Vol. 19, No. 24, 15.12.2011, p. 7387-7393.

Research output: Contribution to journalReview ArticleScientificpeer-review

Laser-induced primary and secondary hemostasis dynamics and mechanisms in relation to selective photothermolysis of port wine stains. / Heger, Michal; Salles, Isabelle I.; Bezemer, Rick; Cloos, Martijn A.; Mordon, Serge R.; Bégu, Sylvie; Deckmyn, Hans; Beek, Johan F.

In: JOURNAL OF DERMATOLOGICAL SCIENCE, Vol. 63, No. 3, 09.2011, p. 139-147.

Research output: Contribution to journalArticleScientificpeer-review

Stabilization of the peroxy intermediate in the oxygen splitting reaction of cytochrome cbb3. / Sharma, Vivek; Wikström, Mårten; Kaila, Ville R I.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1807, No. 7, 07.2011, p. 813-818.

Research output: Contribution to journalArticleScientificpeer-review

BACOM : In silico detection of genomic deletion types and correction of normal cell contamination in copy number data. / Yu, Guoqiang; Zhang, Bai; Bova, G. Steven; Xu, Jianfeng; Shih, Ie Ming; Wang, Yue.

In: Bioinformatics, Vol. 27, No. 11, btr183, 06.2011, p. 1473-1480.

Research output: Contribution to journalArticleScientificpeer-review

Trans-interaction of nephrin and Neph1/Neph3 induces cell adhesion that associates with decreased tyrosine phosphorylation of nephrin. / Heikkilä, Eija; Ristola, Mervi; Havana, Marika; Jones, Nina; Holthöfer, Harry; Lehtonen, Sanna.

In: BIOCHEMICAL JOURNAL, Vol. 435, No. 3, 01.05.2011, p. 619-628.

Research output: Contribution to journalArticleScientificpeer-review

Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators. / Auer, Sanna; Nirschl, Martin; Schreiter, Matthias; Vikholm-Lundin, Inger.

In: Analytical and Bioanalytical Chemistry, Vol. 400, No. 5, 05.2011, p. 1387-1396.

Research output: Contribution to journalArticleScientificpeer-review

The identity of the transient proton loading site of the proton-pumping mechanism of cytochrome c oxidase. / Kaila, Ville R I; Sharma, Vivek; Wikström, Mårten.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1807, No. 1, 01.2011, p. 80-84.

Research output: Contribution to journalArticleScientificpeer-review

Efficient production of NV colour centres in nanodiamonds using high-energy electron irradiation. / Dantelle, G.; Slablab, A.; Rondin, L.; Lainé, F.; Carrel, F.; Bergonzo, Ph.; Perruchas, S.; Gacoin, T.; Treussart, F.; Roch, J. F.

In: Journal of Luminescence, Vol. 130, No. 9, 09.2010, p. 1655-1658.

Research output: Contribution to journalArticleScientificpeer-review

Revealing differences in gene network inference algorithms on the network level by ensemble methods. / Altay, Gökmen; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 26, No. 14, btq259, 25.05.2010, p. 1738-1744.

Research output: Contribution to journalArticleScientificpeer-review

Surface science analysis and surface modification methods for biomaterials research. / Kanninen, L.; Jokinen, N.; Lahtonen, K.; Jussila, P.; Ali-Löytty, H.; Hirsimäki, M.; Leppiniemi, J.; Hytönen, V.; Kulomaa, M.; Ahola, N.; Paakinaho, K.; Kellomäki, M.; Valden, M.

In: European Cells and Materials, Vol. 20, No. SUPPL. 3, 01.01.2010, p. 133.

Research output: Contribution to journalArticleScientificpeer-review

Unite and conquer : Univariate and multivariate approaches for finding differentially expressed gene sets. / Glazko, Galina V.; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 25, No. 18, 09.2009, p. 2348-2354.

Research output: Contribution to journalArticleScientificpeer-review

Structural information content of networks : Graph entropy based on local vertex functionals. / Dehmer, Matthias; Emmert-Streib, Frank.

In: Computational Biology and Chemistry, Vol. 32, No. 2, 04.2008, p. 131-138.

Research output: Contribution to journalArticleScientificpeer-review

Responses of methane oxidation to temperature and water content in cover soil of a boreal landfill. / Einola, Juha Kalle M; Kettunen, Riitta H.; Rintala, Jukka A.

In: Soil Biology and Biochemistry, Vol. 39, No. 5, 05.2007, p. 1156-1164.

Research output: Contribution to journalArticleScientificpeer-review

Modeling of anaerobic degradation of solid slaughterhouse waste : Inhibition effects of long-chain fatty acids or ammonia. / Lokshina, L. Y.; Vavilin, V. A.; Salminen, E.; Rintala, J.

In: Applied Biochemistry and Biotechnology, Vol. 109, No. 1-3, 04.2003, p. 15-32.

Research output: Contribution to journalArticleScientificpeer-review

Preparation of 5-substituted 2-carboxyindoles on solid support. / Tois, Jan; Franzén, Robert; Aitio, Olli; Huikko, Katri; Taskinen, Jyrki.

In: Tetrahedron Letters, Vol. 41, No. 14, 01.04.2000, p. 2443-2446.

Research output: Contribution to journalArticleScientificpeer-review

Utilization of Grignard reagents in solid-phase synthesis : A review of the literature. / Franzén, Robert G.

In: Tetrahedron, Vol. 56, No. 5, 28.01.2000, p. 685-691.

Research output: Contribution to journalReview ArticleScientificpeer-review

Solution structure of nodularin : An inhibitor of serine/threonine- specific protein phosphatases. / Annila, Arto; Lehtimäki, Jaana; Mattila, Kimmo; Eriksson, John E.; Sivonen, Kaarina; Rantala, Tapio T.; Drakenberg, Torbjörn.

In: Journal of Biological Chemistry, Vol. 271, No. 28, 1996, p. 16695-16702.

Research output: Contribution to journalArticleScientificpeer-review

Synthesis of chlorinated 5-hydroxy 4-methyl-2(5H)-furanones and mucochloric acid. / Franzén, Robert; Kronberg, Leif.

In: Tetrahedron Letters, Vol. 36, No. 22, 29.05.1995, p. 3905-3908.

Research output: Contribution to journalArticleScientificpeer-review