Mixed carbon substrates: a necessary nuisance or a missed opportunity?

Liu, N., Santala, S. & Stephanopoulos, G., 1 Apr 2020, In : CURRENT OPINION IN BIOTECHNOLOGY. 62, p. 15-21 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films

Calejo, M. T., Saari, J., Vuorenpää, H., Vuorimaa-Laukkanen, E., Kallio, P., Aalto-Setälä, K., Miettinen, S., Skottman, H., Kellomäki, M. & Juuti-Uusitalo, K., 2020, In : Acta Biomaterialia. 101, p. 327-343 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

Research output: Contribution to journalArticleScientificpeer-review

Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms

Hajdu-Rahkama, R., Ahoranta, S., Lakaniemi, A-M. & Puhakka, J. A., 15 Oct 2019, In : Biochemical Engineering Journal. 150, 107286.

Research output: Contribution to journalArticleScientificpeer-review

An efficient auxin-inducible degron system with low basal degradation in human cells

Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes

Kreutzer, J., Viehrig, M., Pölönen, R. P., Zhao, F., Ojala, M., Aalto-Setälä, K. & Kallio, P., 23 Aug 2019, In : BIOMECHANICS AND MODELING IN MECHANOBIOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium

Johansson, J. K., Karema-Jokinen, V. I., Hakanen, S., Jylhä, A., Uusitalo, H., Vihinen-Ranta, M., Skottman, H., Ihalainen, T. O. & Nymark, S., 15 Aug 2019, In : BMC BIOLOGY. 17, 1, 63.

Research output: Contribution to journalArticleScientificpeer-review

Alkane and wax ester production from lignin-related aromatic compounds

Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 1 Aug 2019, In : Biotechnology and Bioengineering. 116, 8, p. 1934-1945 12 p.

Research output: Contribution to journalArticleScientificpeer-review

An architectural understanding of natural sway frequencies in trees

Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

Research output: Contribution to journalArticleScientificpeer-review

The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers

Lolicato, F., Joly, L., Martinez-Seara, H., Fragneto, G., Scoppola, E., Baldelli Bombelli, F., Vattulainen, I., Akola, J. & Maccarini, M., 7 Jun 2019, In : Small. 15, 23, 1805046.

Research output: Contribution to journalArticleScientificpeer-review

Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons

Habib, M., Serebryannikov, A. E., Caglayan, H., Vandenbosch, G. A. E. & Ozbay, E., Jun 2019, In : Plasmonics. 14, 3, p. 721-729 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times

Peltokangas, M., Suominen, V., Vakhitov, D., Korhonen, J., Verho, J., Mattila, V. M., Romsi, P., Lekkala, J., Vehkaoja, A. & Oksala, N., May 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1058-1065

Research output: Contribution to journalArticleScientificpeer-review

Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules

Luo, J., Lehtinen, T., Efimova, E., Santala, V. & Santala, S., 11 Mar 2019, In : Microbial Cell Factories. 18, 1, 13 p., 48.

Research output: Contribution to journalArticleScientificpeer-review

Mechanical impact stimulation platform tailored for high-resolution light microscopy

Halonen, H. T., Hyttinen, J. A. K. & Ihalainen, T. O., 2019, In : HEALTH AND TECHNOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Optical wireless cochlear implants

Trevlakis, S. E., Boulogeorgos, A. A. A., Sofotasios, P. C., Muhaidat, S. & Karagiannidis, G. K., 2019, In : Biomedical Optics Express. 10, 2, p. 707-730 24 p.

Research output: Contribution to journalArticleScientificpeer-review

O2-requiring molecular reporters of gene expression for anaerobic microorganisms

Guglielmetti, S., Santala, V., Mangayil, R., Ciranna, A. & Karp, M. T., 2019, In : Biosensors and Bioelectronics. 123, p. 1-6 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits

Martins, D. P., Barros, M. T. & Balasubramaniam, S., 2019, (Accepted/In press) In : IEEE Transactions on Nanobioscience.

Research output: Contribution to journalArticleScientificpeer-review

Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds

Baino, F., Barberi, J., Fiume, E., Orlygsson, G., Massera, J. & Verné, E., 2019, In : Journal of Healthcare Engineering. 2019, 5153136.

Research output: Contribution to journalArticleScientificpeer-review

Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch

Santala, S., Efimova, E. & Santala, V., 1 Dec 2018, In : Metabolic Engineering Communications. 7, e00078.

Research output: Contribution to journalArticleScientificpeer-review

The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration

Gasik, M., Zühlke, A., Haaparanta, A-M., Muhonen, V., Laine, K., Bilotsky, Y., Kellomäki, M. & Kiviranta, I., 30 Nov 2018, In : Frontiers in Bioengineering and Biotechnology. 6, NOV, 187.

Research output: Contribution to journalArticleScientificpeer-review

Super-resolution microscopy for biological specimens: Lensless phase retrieval in noisy conditions

Shevkunov, I., Katkovnik, V., Petrov, N. V. & Egiazarian, K., 1 Nov 2018, In : Biomedical Optics Express. 9, 11, p. 5511-5523 13 p., #340805.

Research output: Contribution to journalArticleScientificpeer-review

Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression

Martins, D. P., Leetanasaksakul, K., Barros, M. T., Thamchaipenet, A., Donnelly, W. & Balasubramaniam, S., Oct 2018, In : IEEE Transactions on Nanobioscience. 17, 4, p. 533-542 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater

Dessì, P., Porca, E., Lakaniemi, A-M., Collins, G. & Lens, P. N. L., 15 Sep 2018, In : Biochemical Engineering Journal. 137, p. 214-221 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms

Milagro, J., Gil, E., Lazaro, J., Seppae, V. P., Malmberg, L. P., Pelkonen, A. S., Kotaniemi-Syrjanen, A., Makela, M., Viik, J. & Bailon, R., Sep 2018, In : IEEE Journal of Biomedical and Health Informatics. 22, 5, p. 1332-1340

Research output: Contribution to journalArticleScientificpeer-review

Production of alkanes from CO2 by engineered bacteria

Lehtinen, T., Virtanen, H., Santala, S. & Santala, V., 21 Aug 2018, In : Biotechnology for Biofuels. 11, 228.

Research output: Contribution to journalArticleScientificpeer-review

Selenate removal in biofilm systems: Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community

Tan, L. C., Espinosa-Ortiz, E. J., Nancharaiah, Y. V., van Hullebusch, E. D., Gerlach, R. & Lens, P. N., Aug 2018, In : Journal of Chemical Technology and Biotechnology. 93, 8, p. 2380-2389

Research output: Contribution to journalArticleScientificpeer-review

Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation

Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Mangayil, R., 3 Jul 2018, In : Biotechnology for Biofuels. 11, 1, 187.

Research output: Contribution to journalArticleScientificpeer-review

Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films

Laurén, P., Paukkonen, H., Lipiäinen, T., Dong, Y., Oksanen, T., Räikkönen, H., Ehlers, H., Laaksonen, P., Yliperttula, M. & Laaksonen, T., 1 Jul 2018, In : Pharmaceutical Research. 35, 7, 145.

Research output: Contribution to journalArticleScientificpeer-review

Segmentation of vessel structures from photoacoustic images with reliability assessment

Raumonen, P. & Tarvainen, T., 1 Jul 2018, In : Biomedical Optics Express. 9, 7, p. 2887-2904 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires

Sutka, A., Timusk, M., Joost, U., Ignatans, R. & Maiorov, M., 2 May 2018, In : e-Journal of Surface Science and Nanotechnology. 16, p. 119-121 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Non-intersecting leaf insertion algorithm for tree structure models

Åkerblom, M., Raumonen, P., Casella, E., Disney, M. I., Danson, F. M., Gaulton, R., Schofield, L. A. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170045.

Research output: Contribution to journalArticleScientificpeer-review

Uncertainty in multispectral lidar signals caused by incidence angle effects

Kaasalainen, S., Åkerblom, M., Nevalainen, O., Hakala, T. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170033.

Research output: Contribution to journalArticleScientificpeer-review

Weighing trees with lasers: Advances, challenges and opportunities

Disney, M. I., Boni Vicari, M., Burt, A., Calders, K., Lewis, S. L., Raumonen, P. & Wilkes, P., 6 Apr 2018, In : Interface Focus. 8, 2, 20170048.

Research output: Contribution to journalArticleScientificpeer-review

Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases

Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 8 Feb 2018, In : Microbial Cell Factories. 17, 1, 19.

Research output: Contribution to journalArticleScientificpeer-review

Azopolymer photopatterning for directional control of angiogenesis

Fedele, C., De Gregorio, M., Netti, P. A., Cavalli, S. & Attanasio, C., 1 Nov 2017, In : Acta Biomaterialia. 63, p. 317-325 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy

Mah, P. T., Novakovic, D., Saarinen, J., van Landeghem, S., Peltonen, L., Laaksonen, T., Isomäki, A. & Strachan, C. J., May 2017, In : Pharmaceutical Research. 34, 5, p. 957-970 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering

Kahraman, M., Ozbay, A., Yuksel, H., Solmaz, R., Demir, B. & Caglayan, H., 5 Apr 2017, (Accepted/In press) In : Plasmonics. p. 1-11 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Multivariate statistical analysis for the identification of potential seafood spoilage indicators

Kuuliala, L., Abatih, E., Ioannidis, A. G., Vanderroost, M., De Meulenaer, B., Ragaert, P. & Devlieghere, F., 1 Feb 2017, In : Food Control. 84, p. 49-60 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro

Hyysalo, A., Ristola, M., Joki, T., Honkanen, M., Vippola, M. & Narkilahti, S., 2017, In : MACROMOLECULAR BIOSCIENCE. 17, 7, 1600517.

Research output: Contribution to journalArticleScientificpeer-review

Electrical Contacts in SOI MEMS Using Aerosol Jet Printing

Khorramdel, B., Torkkeli, A. & Mäntysalo, M., 2017, In : IEEE Journal of the Electron Devices Society. 6, p. 34-40

Research output: Contribution to journalArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in bone tissue engineering

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 25 Nov 2016.

Research output: Other conference contributionPaper, poster or abstractScientific

Selenium: environmental significance, pollution, and biological treatment technologies

Tan, L. C., Nancharaiah, Y. V., van Hullebusch, E. D. & Lens, P. N. L., 1 Sep 2016, In : Biotechnology Advances. 34, 5, p. 886-907 22 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 10 Jul 2016. 1 p.

Research output: Other conference contributionPaper, poster or abstractScientific

Biological and Bioelectrochemical Recovery of Critical and Scarce Metals

Nancharaiah, Y. V., Mohan, S. V. & Lens, P. N. L., 2016, In : Trends in Biotechnology. 34, 2, p. 137-155 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating

Lahti, J., Lavonen, J., Lahtinen, K., Johansson, P., Seppänen, T. & Cameron, D. C., 2016, TAPPI International Conference on Nanotechnology for Renewable Materials 2016. TAPPI Press, Vol. 2. p. 684-706 23 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality

Saarinen, J. J., Valtakari, D., Bollström, R., Stepien, M., Haapanen, J., Mäkelä, J. M. & Toivakka, M., 2016, Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. TechConnect, Vol. 4. p. 47-50 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts

Jia, L., Sun, Z., Wu, X., Misteli, T. & Sharma, V., 1 Dec 2015, In : Genomics Data. 6, p. 277-279 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates

Kannisto, M. S., Mangayil, R. K., Shrivastava-Bhattacharya, A., Pletschke, B. I., Karp, M. T. & Santala, V. P., 1 Dec 2015, In : Biotechnology for Biofuels. 8, 1, 198.

Research output: Contribution to journalArticleScientificpeer-review

Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles

Ravi, A., Luthra, A., Teixeira, F. L., Berger, P. R. & Coe, J. V., 1 Dec 2015, In : Plasmonics. 10, 6, p. 1505-1512 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater

Marjakangas, J. M., Chen, C. Y., Lakaniemi, A. M., Puhakka, J. A., Whang, L. M. & Chang, J. S., 5 Nov 2015, In : Biochemical Engineering Journal. 103, p. 177-184 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery

Zorzi, G. K., Párraga, J. E., Seijo, B. & Sanchez, A., 1 Nov 2015, In : Colloids and Surfaces B: Biointerfaces. 135, p. 533-541 9 p.

Research output: Contribution to journalArticleScientificpeer-review

ESD qualification data used as the basis for building electrostatic discharge protected areas

Tamminen, P., Viheriäkoski, T., Sydänheimo, L. & Ukkonen, L., 1 Oct 2015, In : Journal of Electrostatics. 77, p. 174-181 8 p., 3024.

Research output: Contribution to journalArticleScientificpeer-review

Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions

Kokko, M. E., Mäkinen, A. E., Sulonen, M. L. K. & Puhakka, J. A., 5 Sep 2015, In : Biochemical Engineering Journal. 101, p. 248-252 5 p.

Research output: Contribution to journalArticleScientificpeer-review

His-tagged norovirus-like particles: A versatile platform for cellular delivery and surface display

Koho, T., Ihalainen, T. O., Stark, M., Uusi-Kerttula, H., Wieneke, R., Rahikainen, R., Blazevic, V., Marjomäki, V., Tampé, R., Kulomaa, M. S. & Hytönen, V. P., 21 Jul 2015, In : European Journal of Pharmaceutics and Biopharmaceutics. 96, p. 22-31 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of the cellular intake of a gene expression inducer at high concentrations

Tran, H., Oliveira, S. M. D. D., Goncalves, N. & Ribeiro, A. S., 20 Jul 2015, In : Molecular Biosystems. 11, 9, p. 2579-2587 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells

Ojansivu, M., Vanhatupa, S., Björkvik, L., Häkkänen, H., Kellomäki, M., Autio, R., Ihalainen, J. A., Hupa, L. & Miettinen, S., 15 Jul 2015, In : Acta Biomaterialia. 21, p. 190-203 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent

Marjakangas, J. M., Lakaniemi, A. M., Koskinen, P. E. P., Chang, J. S. & Puhakka, J. A., 5 Jul 2015, In : Biochemical Engineering Journal. 99, p. 48-54 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts

Nybond, S., Karp, M., Yrjönen, T. & Tammela, P., 1 Jul 2015, In : Journal of Microbiological Methods. 114, p. 54-56 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid

Oliveira, S. M. D., Chandraseelan, J. G., Häkkinen, A., Goncalves, N. S. M., Yli-Harja, O., Startceva, S. & S. Ribeiro, A., 1 Jul 2015, In : Molecular Biosystems. 11, 7, p. 1939-1945 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Using shRNA experiments to validate gene regulatory networks

Olsen, C., Fleming, K., Prendergast, N., Rubio, R., Emmert-Streib, F., Bontempi, G., Quackenbush, J. & Haibe-Kains, B., 1 Jun 2015, In : Genomics Data. 4, p. 123-126 4 p.

Research output: Contribution to journalArticleScientificpeer-review

O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs

Liu, J., Jin, C., Cherian, R. M., Karlsson, N. G. & Holgersson, J., 1 Apr 2015, In : Journal of Biotechnology. 199, p. 77-89 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Ageing-associated changes in the human DNA methylome: Genomic locations and effects on gene expression

Marttila, S., Kananen, L., Häyrynen, S., Jylhävä, J., Nevalainen, T., Hervonen, A., Jylhä, M., Nykter, M. & Hurme, M., 14 Mar 2015, In : BMC Genomics. 16, 1, 179.

Research output: Contribution to journalArticleScientificpeer-review

Multi-stable dynamics of the non-adiabatic repressilator

Potapov, I., Zhurov, B. & Volkov, E., 6 Mar 2015, In : Journal of the Royal Society. Interface. 12, 104, 20141315.

Research output: Contribution to journalArticleScientificpeer-review

Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning

Lehtonen, S. I., Taskinen, B., Ojala, E., Kukkurainen, S., Rahikainen, R., Riihimäki, T. A., Laitinen, O. H., Kulomaa, M. S. & Hytönen, V. P., 2015, In : Protein Engineering Design and Selection. 28, 1, p. 23-28 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives

Akimova, A. V., Rychkov, G. N., Grin, M. A., Filippova, N. A., Golovina, G. V., Durandin, N. A., Vinogradov, A. M., Kokrashvili, T. A., Mironov, A. F., Shtil, A. A. & Kuzmin, V. A., 2015, In : ACTA NATURAE. 7, 1, p. 109-116 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Switchavidin: Reversible biotin-avidin-biotin bridges with high affinity and specificity

Taskinen, B., Zauner, D., Lehtonen, S. I., Koskinen, M., Thomson, C., Kähkönen, N., Kukkurainen, S., Määttä, J. A. E., Ihalainen, T. O., Kulomaa, M. S., Gruber, H. J. & Hytönen, V. P., 17 Dec 2014, In : Bioconjugate Chemistry. 25, 12, p. 2233-2243 11 p.

Research output: Contribution to journalArticleScientificpeer-review

The talin-integrin interface under mechanical stress

Kukkurainen, S., Määttä, J. A., Saeger, J., Valjakka, J., Vogel, V. & Hytönen, V. P., 1 Dec 2014, In : Molecular Biosystems. 10, 12, p. 3217-3228 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography

Rasappa, S., Schulte, L., Borah, D., Morris, M. A. & Ndoni, S., 1 Oct 2014, In : Colloids and Interface Science Communications. 2, p. 1-5 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production

Praveenkumar, R., Kim, B., Choi, E., Lee, K., Cho, S., Hyun, J. S., Park, J. Y., Lee, Y. C., Lee, H. U., Lee, J. S. & Oh, Y. K., 12 Sep 2014, In : Bioprocess and Biosystems Engineering. 37, 10, p. 2083-2094 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces

Kurppa, K., Hytönen, V. P., Nakari-Setälä, T., Kulomaa, M. S. & Linder, M. B., 1 Aug 2014, In : Colloids and Surfaces B: Biointerfaces. 120, p. 102-109 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure

Ciranna, A., Pawar, S. S., Santala, V., Karp, M. & van Niel, E. W. J., 28 Mar 2014, In : Microbial Cell Factories. 13, 1, 48.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose

Kannisto, M., Aho, T., Karp, M. & Santala, V., 2014, In : Applied and Environmental Microbiology. 80, 22, p. 7021-7027 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain

Guglielmetti, S., Zanoni, I., Balzaretti, S., Miriani, M., Taverniti, V., de Noni, I., Presti, I., Stuknyte, M., Scarafoni, A., Arioli, S., Iametti, S., Bonomi, F., Mora, D., Karp, M. & Granucci, F., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5170-5177 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast

Emmert-Streib, F., Zhang, S. D. & Hamilton, P., 2014, In : Genomics Data. 2, p. 37-39 3 p.

Research output: Contribution to journalArticleScientificpeer-review

TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75

Guglielmetti, S., Balzaretti, S., Taverniti, V., Miriani, M., Milani, C., Scarafoni, A., Corona, S., Ciranna, A., Arioli, S., Santala, V., Iametti, S., Bonomi, F., Ventura, M., Mora, D. & Karp, M., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5161-5169 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Reversible biofunctionalization of surfaces with a switchable mutant of avidin

Pollheimer, P., Taskinen, B., Scherfler, A., Gusenkov, S., Creus, M., Wiesauer, P., Zauner, D., Schöfberger, W., Schwarzinger, C., Ebner, A., Tampé, R., Stutz, H., Hytönen, V. P. & Gruber, H. J., 16 Oct 2013, In : Bioconjugate Chemistry. 24, 10, p. 1656-1668 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

Matos Simoes, R. D., Dehmer, M. & Emmert-Streib, F., 11 May 2013, In : BMC Genomics. 14, 1, 324.

Research output: Contribution to journalArticleScientificpeer-review

Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications

Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 2013, In : Acta Biomaterialia. 9, 5, p. 6450-6458 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream

Magarkar, A., Stepniewski, M., Karakas, E., Rog, T., Yliperttula, M., Urtti, A. & Bunker, A., 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2. p. 576-578 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on Artificial Neural Networks

Iosifidis, A., Tefas, A. & Pitas, I., 2013, IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. p. 7-13 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on dynemes and discriminant learning

Iosifidis, A., Tefas, A. & Pitas, I., 2013, 2013 International Workshop on Biometrics and Forensics, IWBF 2013.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll atomic layer deposition for flexible substrates

Lahtinen, K., Maydannik, P., Kääriäinen, T., Seppänen, T., Cameron, D. C., Johansson, P., Kraft, M. & Kuusipalo, J., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 726-739 14 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Undercut edges for robust capillary self-alignment in hybrid microassembly

Liimatainen, V., Sariola, V. & Zhou, Q., 2013, 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. p. 1088-1091 4 p. 6559911

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Wear resistance of nanoparticle coatings on paperboard

Stepien, M., Chinga-Carrasco, G., Saarinen, J. J., Teisala, H., Tuominen, M., Aromaa, M., Haapanen, J., Kuusipalo, J., Mäkelä, J. M. & Toivakka, M., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 821-829 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Oxidative stress response and fatty acid changes associated with bioaccumulation of chromium [Cr(VI)] by a fresh water cyanobacterium Chroococcus sp.

Kumar, M. S., Praveenkumar, R., Ilavarasi, A., Rajeshwari, K. & Thajuddin, N., Feb 2012, In : Biotechnology Letters. 34, 2, p. 247-251 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Production of l-xylose from l-xylulose using Escherichia coli l-fucose isomerase

Usvalampi, A., Turunen, O., Valjakka, J., Pastinen, O., Leisola, M. & Nyyssölä, A., 5 Jan 2012, In : ENZYME AND MICROBIAL TECHNOLOGY. 50, 1, p. 71-76 6 p.

Research output: Contribution to journalArticleScientificpeer-review

DNA family shuffling within the chicken avidin protein family - A shortcut to more powerful protein tools

Niederhauser, B., Siivonen, J., Määttä, J. A., Jänis, J., Kulomaa, M. S. & Hytönen, V. P., Jan 2012, In : Journal of Biotechnology. 157, 1, p. 38-49 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of proprotein convertase substrates using genome-wide expression correlation analysis

Turpeinen, H., Kukkurainen, S., Pulkkinen, K., Kauppila, T., Ojala, K., Hytönen, V. P. & Pesu, M., 20 Dec 2011, In : BMC Genomics. 12, 618.

Research output: Contribution to journalArticleScientificpeer-review

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

Amps, K., Andrews, P. W., Anyfantis, G., Armstrong, L., Avery, S., Baharvand, H., Baker, J., Baker, D., Munoz, M. B., Beil, S., Benvenisty, N., Ben-Yosef, D., Biancotti, J. C., Bosman, A., Brena, R. M., Brison, D., Caisander, G., Camarasa, M. V., Chen, J., Chiao, E., Choi, Y. M., Choo, A. B. H., Collins, D., Colman, A., Crook, J. M., Daley, G. Q., Dalton, A., De Sousa, P. A., Denning, C., Downie, J., Dvorak, P., Montgomery, K. D., Feki, A., Ford, A., Fox, V., Fraga, A. M., Frumkin, T., Ge, L., Gokhale, P. J., Golan-Lev, T., Gourabi, H., Gropp, M., Guangxiu, L., Hampl, A., Harron, K., Healy, L., Herath, W., Holm, F., Hovatta, O., Hyllner, J., Inamdar, M. S., Irwanto, A. K., Ishii, T., Jaconi, M., Jin, Y., Kimber, S., Kiselev, S., Knowles, B. B., Kopper, O., Kukharenko, V., Kuliev, A., Lagarkova, M. A., Laird, P. W., Lako, M., Laslett, A. L., Lavon, N., Lee, D. R., Lee, J. E., Li, C., Lim, L. S., Ludwig, T. E., Ma, Y., Maltby, E., Mateizel, I., Mayshar, Y., Mileikovsky, M., Minger, S. L., Miyazaki, T., Moon, S. Y., Moore, H., Mummery, C., Nagy, A., Nakatsuji, N., Narwani, K., Oh, S. K. W., Oh, S. K., Olson, C., Otonkoski, T., Pan, F., Park, I. H., Pells, S., Pera, M. F., Pereira, L. V., Qi, O., Raj, G. S., Reubinoff, B., Robins, A., Robson, P., Rossant, J., Salekdeh, G. H., Schulz, T. C., Sermon, K., Mohamed, J. S., Shen, H., Sherrer, E., Sidhu, K., Sivarajah, S., Skottman, H., Spits, C., Stacey, G. N., Strehl, R., Strelchenko, N., Suemori, H., Sun, B., Suuronen, R., Takahashi, K., Tuuri, T., Venu, P., Verlinsky, Y., Oostwaard, D. W. V., Weisenberger, D. J., Wu, Y., Yamanaka, S., Young, L. & Zhou, Q., Dec 2011, In : Nature Biotechnology. 29, 12, p. 1132-1144 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Versatile bio-ink for covalent immobilization of chimeric avidin on sol-gel substrates

Heikkinen, J. J., Kivimäki, L., Määttä, J. A. E., Mäkelä, I., Hakalahti, L., Takkinen, K., Kulomaa, M. S., Hytönen, V. P. & Hormi, O. E. O., 15 Oct 2011, In : Colloids and Surfaces B: Biointerfaces. 87, 2, p. 409-414 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Hybrid nanoparticle design based on cationized gelatin and the polyanions dextran sulfate and chondroitin sulfate for ocular gene therapy

Zorzi, G. K., Párraga, J. E., Seijo, B. & Sánchez, A., 7 Jul 2011, In : MACROMOLECULAR BIOSCIENCE. 11, 7, p. 905-913 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein

Riihimäki, T. A., Hiltunen, S., Rangl, M., Nordlund, H. R., Määttä, J. A. E., Ebner, A., Hinterdorfer, P., Kulomaa, M. S., Takkinen, K. & Hytönen, V. P., 9 Jun 2011, In : BMC BIOTECHNOLOGY. 11, 64.

Research output: Contribution to journalArticleScientificpeer-review

Networks for systems biology: Conceptual connection of data and function

Emmert-Streib, F. & Dehmer, M., May 2011, In : IET Systems Biology. 5, 3, p. 185-207 23 p.

Research output: Contribution to journalArticleScientificpeer-review

Chimeric avidin shows stability against harsh chemical conditions-biochemical analysis and 3D structure

Määttä, J. A. E., Eisenberg-Domovich, Y., Nordlund, H. R., Hayouka, R., Kulomaa, M. S., Livnah, O. & Hytönen, V. P., Mar 2011, In : Biotechnology and Bioengineering. 108, 3, p. 481-490 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Local network-based measures to assess the inferability of different regulatory networks

Emmert-Streib, F. & Altay, G., Jul 2010, In : IET Systems Biology. 4, 4, p. 277-288 12 p., ISBEAT000004000004000277000001.

Research output: Contribution to journalArticleScientificpeer-review

Photostable second-harmonic generation from a single KTiOPO4 nanocrystal for nonlinear microscopy

Le Xuan, L., Zhou, C., Slablab, A., Chauvat, D., Tard, C., Perruchas, S., Gacoin, T., Villeval, P. & Roch, J-F., Sep 2008, In : Small. 4, 9, p. 1332-1336 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Modeling of anaerobic degradation of solid slaughterhouse waste: Inhibition effects of long-chain fatty acids or ammonia

Lokshina, L. Y., Vavilin, V. A., Salminen, E. & Rintala, J., Apr 2003, In : Applied Biochemistry and Biotechnology. 109, 1-3, p. 15-32 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Start-up and Operation of Laboratory-Scale Thermophilic Upflow Anaerobic Sludge Blanket Reactors Treating Vegetable Processing Wastewaters

Lepistö, S. S. & Rintala, J. A., Mar 1997, In : Journal of Chemical Technology and Biotechnology. 68, 3, p. 331-339 9 p.

Research output: Contribution to journalArticleScientificpeer-review

A two-stage thermophilic anaerobic process for the treatment of source sorted household solid waste

Rintala, J. A. & Ahring, B. K., Oct 1994, In : Biotechnology Letters. 16, 10, p. 1097-1102 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Thermophilic anaerobic digestion of source-sorted household solid waste: the effects of enzyme additions

Rintala, J. A. & Ahring, B. K., Feb 1994, In : Applied Microbiology and Biotechnology. 40, 6, p. 916-919 4 p.

Research output: Contribution to journalArticleScientificpeer-review