Mixed carbon substrates : a necessary nuisance or a missed opportunity? / Liu, Nian; Santala, Suvi; Stephanopoulos, Gregory.

In: CURRENT OPINION IN BIOTECHNOLOGY, Vol. 62, 01.04.2020, p. 15-21.

Research output: Contribution to journalReview ArticleScientificpeer-review

Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films. / Calejo, Maria Teresa; Saari, Jaakko; Vuorenpää, Hanna; Vuorimaa-Laukkanen, Elina; Kallio, Pasi; Aalto-Setälä, Katriina; Miettinen, Susanna; Skottman, Heli; Kellomäki, Minna; Juuti-Uusitalo, Kati.

In: Acta Biomaterialia, Vol. 101, 2020, p. 327-343.

Research output: Contribution to journalArticleScientificpeer-review

Toward Rigorous Materials Production : New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices. / Nymark, Penny; Bakker, Martine; Dekkers, Susan; Franken, Remy; Fransman, Wouter; García-Bilbao, Amaia; Greco, Dario; Gulumian, Mary; Hadrup, Niels; Halappanavar, Sabina; Hongisto, Vesa; Hougaard, Karin Sørig; Jensen, Keld Alstrup; Kohonen, Pekka; Koivisto, Antti Joonas; Dal Maso, Miikka; Oosterwijk, Thies; Poikkimäki, Mikko; Rodriguez-Llopis, Isabel; Stierum, Rob; Sørli, Jorid Birkelund; Grafström, Roland.

In: Small, 2020.

Research output: Contribution to journalReview ArticleScientificpeer-review

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region. / Häkkinen, Antti; Oliveira, Samuel M.D.; Neeli-Venkata, Ramakanth; Ribeiro, Andre S.

In: Journal of the Royal Society Interface, Vol. 16, No. 161, 20190507, 01.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms. / Hajdu-Rahkama, Réka; Ahoranta, Sarita; Lakaniemi, Aino-Maija; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 150, 107286, 15.10.2019.

Research output: Contribution to journalArticleScientificpeer-review

An efficient auxin-inducible degron system with low basal degradation in human cells. / Li, Shiqian; Prasanna, Xavier; Salo, Veijo T.; Vattulainen, Ilpo; Ikonen, Elina.

In: Nature Methods, Vol. 16, No. 9, 01.09.2019, p. 866-869.

Research output: Contribution to journalArticleScientificpeer-review

Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes. / Kreutzer, Joose; Viehrig, Marlitt; Pölönen, Risto Pekka; Zhao, Feihu; Ojala, Marisa; Aalto-Setälä, Katriina; Kallio, Pasi.

In: BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 23.08.2019.

Research output: Contribution to journalArticleScientificpeer-review

Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium. / Johansson, Julia K.; Karema-Jokinen, Viivi I.; Hakanen, Satu; Jylhä, Antti; Uusitalo, Hannu; Vihinen-Ranta, Maija; Skottman, Heli; Ihalainen, Teemu O.; Nymark, Soile.

In: BMC BIOLOGY, Vol. 17, No. 1, 63, 15.08.2019.

Research output: Contribution to journalArticleScientificpeer-review

Alkane and wax ester production from lignin-related aromatic compounds. / Salmela, Milla; Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Santala, Ville.

In: Biotechnology and Bioengineering, Vol. 116, No. 8, 01.08.2019, p. 1934-1945.

Research output: Contribution to journalArticleScientificpeer-review

An architectural understanding of natural sway frequencies in trees. / Jackson, T.; Shenkin, A.; Moore, J.; Bunce, A.; van Emmerik, T.; Kane, B.; Burcham, D.; James, K.; Selker, J.; Calders, K.; Origo, N.; Disney, M.; Burt, A.; Wilkes, P.; Raumonen, P.; Gonzalez de Tanago Menaca, J.; Lau, A.; Herold, M.; Goodman, R. C.; Fourcaud, T.; Malhi, Y.

In: Journal of the Royal Society. Interface, Vol. 16, No. 155, 28.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers. / Lolicato, Fabio; Joly, Loic; Martinez-Seara, Hector; Fragneto, Giovanna; Scoppola, Ernesto; Baldelli Bombelli, Francesca; Vattulainen, Ilpo; Akola, Jaakko; Maccarini, Marco.

In: Small, Vol. 15, No. 23, 1805046, 07.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons. / Habib, Mohsin; Serebryannikov, Andriy E.; Caglayan, Humeyra; Vandenbosch, Guy A.E.; Ozbay, Ekmel.

In: Plasmonics, Vol. 14, No. 3, 06.2019, p. 721-729.

Research output: Contribution to journalArticleScientificpeer-review

Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times. / Peltokangas, Mikko; Suominen, Velipekka; Vakhitov, Damir; Korhonen, Janne; Verho, Jarmo; Mattila, Ville M.; Romsi, Pekka; Lekkala, Jukka; Vehkaoja, Antti; Oksala, Niku.

In: IEEE Journal of Biomedical and Health Informatics, Vol. 23, No. 3, 05.2019, p. 1058-1065.

Research output: Contribution to journalArticleScientificpeer-review

Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules. / Luo, Jin; Lehtinen, Tapio; Efimova, Elena; Santala, Ville; Santala, Suvi.

In: Microbial Cell Factories, Vol. 18, No. 1, 48, 11.03.2019.

Research output: Contribution to journalArticleScientificpeer-review

Mechanical impact stimulation platform tailored for high-resolution light microscopy. / Halonen, Heidi T.; Hyttinen, Jari A.K.; Ihalainen, Teemu O.

In: HEALTH AND TECHNOLOGY, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Optical wireless cochlear implants. / Trevlakis, Stylianos E.; Boulogeorgos, Alexandros Apostolos A.; Sofotasios, Paschalis C.; Muhaidat, Sami; Karagiannidis, George K.

In: Biomedical Optics Express, Vol. 10, No. 2, 2019, p. 707-730.

Research output: Contribution to journalArticleScientificpeer-review

O2-requiring molecular reporters of gene expression for anaerobic microorganisms. / Guglielmetti, Simone; Santala, Ville; Mangayil, Rahul; Ciranna, Alessandro; Karp, Matti T.

In: Biosensors and Bioelectronics, Vol. 123, 2019, p. 1-6.

Research output: Contribution to journalArticleScientificpeer-review

Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits. / Martins, Daniel P.; Barros, Michael Taynnan; Balasubramaniam, Sasitharan.

In: IEEE Transactions on Nanobioscience, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds. / Baino, Francesco; Barberi, Jacopo; Fiume, Elisa; Orlygsson, Gissur; Massera, Jonathan; Verné, Enrica.

In: Journal of Healthcare Engineering, Vol. 2019, 5153136, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch. / Santala, Suvi; Efimova, Elena; Santala, Ville.

In: Metabolic Engineering Communications, Vol. 7, e00078, 01.12.2018.

Research output: Contribution to journalArticleScientificpeer-review

The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration. / Gasik, Michael; Zühlke, Alexandra; Haaparanta, Anne-Marie; Muhonen, Virpi; Laine, Kaisa; Bilotsky, Yevgen; Kellomäki, Minna; Kiviranta, Ilkka.

In: Frontiers in Bioengineering and Biotechnology, Vol. 6, No. NOV, 187, 30.11.2018.

Research output: Contribution to journalArticleScientificpeer-review

Super-resolution microscopy for biological specimens : Lensless phase retrieval in noisy conditions. / Shevkunov, Igor; Katkovnik, Vladimir; Petrov, Nikolay V.; Egiazarian, Karen.

In: Biomedical Optics Express, Vol. 9, No. 11, #340805, 01.11.2018, p. 5511-5523.

Research output: Contribution to journalArticleScientificpeer-review

Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression. / Martins, Daniel P.; Leetanasaksakul, Kantinan; Barros, Michael Taynnan; Thamchaipenet, Arinthip; Donnelly, William; Balasubramaniam, Sasitharan.

In: IEEE Transactions on Nanobioscience, Vol. 17, No. 4, 10.2018, p. 533-542.

Research output: Contribution to journalArticleScientificpeer-review

Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater. / Dessì, Paolo; Porca, Estefania; Lakaniemi, Aino-Maija; Collins, Gavin; Lens, Piet N.L.

In: Biochemical Engineering Journal, Vol. 137, 15.09.2018, p. 214-221.

Research output: Contribution to journalArticleScientificpeer-review

Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms. / Milagro, Javier; Gil, Eduardo; Lazaro, Jesus; Seppae, Ville Pekka; Malmberg, Leo Pekka; Pelkonen, Anna Susanna; Kotaniemi-Syrjanen, Anne; Makela, Mika; Viik, Jari; Bailon, Raquel.

In: IEEE Journal of Biomedical and Health Informatics, Vol. 22, No. 5, 09.2018, p. 1332-1340.

Research output: Contribution to journalArticleScientificpeer-review

Production of alkanes from CO2 by engineered bacteria. / Lehtinen, Tapio; Virtanen, Henri; Santala, Suvi; Santala, Ville.

In: Biotechnology for Biofuels, Vol. 11, 228, 21.08.2018.

Research output: Contribution to journalArticleScientificpeer-review

Selenate removal in biofilm systems : Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community. / Tan, Lea Chua; Espinosa-Ortiz, Erika J.; Nancharaiah, Yarlagadda V.; van Hullebusch, Eric D.; Gerlach, Robin; Lens, Piet Nl.

In: Journal of Chemical Technology and Biotechnology, Vol. 93, No. 8, 08.2018, p. 2380-2389.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation. / Salmela, Milla; Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Mangayil, Rahul.

In: Biotechnology for Biofuels, Vol. 11, No. 1, 187, 03.07.2018.

Research output: Contribution to journalArticleScientificpeer-review

Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films. / Laurén, Patrick; Paukkonen, Heli; Lipiäinen, Tiina; Dong, Yujiao; Oksanen, Timo; Räikkönen, Heikki; Ehlers, Henrik; Laaksonen, Päivi; Yliperttula, Marjo; Laaksonen, Timo.

In: Pharmaceutical Research, Vol. 35, No. 7, 145, 01.07.2018.

Research output: Contribution to journalArticleScientificpeer-review

Segmentation of vessel structures from photoacoustic images with reliability assessment. / Raumonen, Pasi; Tarvainen, Tanja.

In: Biomedical Optics Express, Vol. 9, No. 7, 01.07.2018, p. 2887-2904.

Research output: Contribution to journalArticleScientificpeer-review

Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires. / Sutka, Andris; Timusk, Martin; Joost, Urmas; Ignatans, Reinis; Maiorov, Mikhail.

In: e-Journal of Surface Science and Nanotechnology, Vol. 16, 02.05.2018, p. 119-121.

Research output: Contribution to journalArticleScientificpeer-review

Non-intersecting leaf insertion algorithm for tree structure models. / Åkerblom, Markku; Raumonen, Pasi; Casella, Eric; Disney, Mathias I.; Danson, F. Mark; Gaulton, Rachel; Schofield, Lucy A.; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170045, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Uncertainty in multispectral lidar signals caused by incidence angle effects. / Kaasalainen, Sanna; Åkerblom, Markku; Nevalainen, Olli; Hakala, Teemu; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170033, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Weighing trees with lasers : Advances, challenges and opportunities. / Disney, M. I.; Boni Vicari, M.; Burt, A.; Calders, K.; Lewis, S. L.; Raumonen, P.; Wilkes, P.

In: Interface Focus, Vol. 8, No. 2, 20170048, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases. / Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Santala, Ville.

In: Microbial Cell Factories, Vol. 17, No. 1, 19, 08.02.2018.

Research output: Contribution to journalArticleScientificpeer-review

Azopolymer photopatterning for directional control of angiogenesis. / Fedele, Chiara; De Gregorio, Maria; Netti, Paolo A.; Cavalli, Silvia; Attanasio, Chiara.

In: Acta Biomaterialia, Vol. 63, 01.11.2017, p. 317-325.

Research output: Contribution to journalArticleScientificpeer-review

Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy. / Mah, Pei T.; Novakovic, Dunja; Saarinen, Jukka; van Landeghem, Stijn; Peltonen, Leena; Laaksonen, Timo; Isomäki, Antti; Strachan, Clare J.

In: Pharmaceutical Research, Vol. 34, No. 5, 05.2017, p. 957-970.

Research output: Contribution to journalArticleScientificpeer-review

Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. / Kahraman, Mehmet; Ozbay, Ayse; Yuksel, Handan; Solmaz, Ramazan; Demir, Baran; Caglayan, Humeyra.

In: Plasmonics, 05.04.2017, p. 1-11.

Research output: Contribution to journalArticleScientificpeer-review

Multivariate statistical analysis for the identification of potential seafood spoilage indicators. / Kuuliala, L.; Abatih, E.; Ioannidis, A. G.; Vanderroost, M.; De Meulenaer, B.; Ragaert, P.; Devlieghere, F.

In: Food Control, Vol. 84, 01.02.2017, p. 49-60.

Research output: Contribution to journalArticleScientificpeer-review

Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro. / Hyysalo, Anu; Ristola, Mervi; Joki, Tiina; Honkanen, Mari; Vippola, Minnamari; Narkilahti, Susanna.

In: MACROMOLECULAR BIOSCIENCE, Vol. 17, No. 7, 1600517, 2017.

Research output: Contribution to journalArticleScientificpeer-review

Electrical Contacts in SOI MEMS Using Aerosol Jet Printing. / Khorramdel, Behnam; Torkkeli, Altti; Mäntysalo, Matti.

In: IEEE Journal of the Electron Devices Society, Vol. 6, 2017, p. 34-40.

Research output: Contribution to journalArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in bone tissue engineering. / Halonen, Heidi; Kyllönen, Laura; Ihalainen, Teemu O.; Miettinen, Susanna; Hyttinen, Jari.

2016. Paper presented at BioMediTech Research Day 2016, Tampere, Finland.

Research output: Other conference contributionPaper, poster or abstractScientific

Selenium : environmental significance, pollution, and biological treatment technologies. / Tan, Lea Chua; Nancharaiah, Yarlagadda V.; van Hullebusch, Eric D.; Lens, Piet N L.

In: Biotechnology Advances, Vol. 34, No. 5, 01.09.2016, p. 886-907.

Research output: Contribution to journalReview ArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells. / Halonen, Heidi; Kyllönen, Laura; Ihalainen, Teemu O.; Miettinen, Susanna; Hyttinen, Jari.

2016. Paper presented at Congress of the European Society of biomechanics ESB2016, Lyon, France.

Research output: Other conference contributionPaper, poster or abstractScientific

Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. / Nancharaiah, Y. V.; Mohan, S. Venkata; Lens, P. N L.

In: Trends in Biotechnology, Vol. 34, No. 2, 2016, p. 137-155.

Research output: Contribution to journalArticleScientificpeer-review

Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating. / Lahti, Johanna; Lavonen, Juho; Lahtinen, Kimmo; Johansson, Petri; Seppänen, Tarja; Cameron, David C.

TAPPI International Conference on Nanotechnology for Renewable Materials 2016. Vol. 2 TAPPI Press, 2016. p. 684-706.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality. / Saarinen, J. J.; Valtakari, D.; Bollström, R.; Stepien, M.; Haapanen, J.; Mäkelä, J. M.; Toivakka, M.

Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. Vol. 4 TechConnect, 2016. p. 47-50.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. / Jia, Li; Sun, Zhonghe; Wu, Xiaolin; Misteli, Tom; Sharma, Vivek.

In: Genomics Data, Vol. 6, 01.12.2015, p. 277-279.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates. / Kannisto, Matti S.; Mangayil, Rahul K.; Shrivastava-Bhattacharya, Ankita; Pletschke, Brett I.; Karp, Matti T.; Santala, Ville P.

In: Biotechnology for Biofuels, Vol. 8, No. 1, 198, 01.12.2015.

Research output: Contribution to journalArticleScientificpeer-review

Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. / Ravi, Aruna; Luthra, Antriksh; Teixeira, Fernando L.; Berger, Paul R.; Coe, James V.

In: Plasmonics, Vol. 10, No. 6, 01.12.2015, p. 1505-1512.

Research output: Contribution to journalArticleScientificpeer-review

Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. / Marjakangas, Jatta M.; Chen, Chun Yen; Lakaniemi, Aino Maija; Puhakka, Jaakko A.; Whang, Liang Ming; Chang, Jo Shu.

In: Biochemical Engineering Journal, Vol. 103, 05.11.2015, p. 177-184.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery. / Zorzi, Giovanni K.; Párraga, Jenny E.; Seijo, Begoña; Sanchez, Alejandro.

In: Colloids and Surfaces B: Biointerfaces, Vol. 135, 01.11.2015, p. 533-541.

Research output: Contribution to journalArticleScientificpeer-review

ESD qualification data used as the basis for building electrostatic discharge protected areas. / Tamminen, Pasi; Viheriäkoski, Toni; Sydänheimo, Lauri; Ukkonen, Leena.

In: Journal of Electrostatics, Vol. 77, 3024, 01.10.2015, p. 174-181.

Research output: Contribution to journalArticleScientificpeer-review

Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions. / Kokko, Marika E.; Mäkinen, Annukka E.; Sulonen, Mira L K; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 101, 05.09.2015, p. 248-252.

Research output: Contribution to journalArticleScientificpeer-review

His-tagged norovirus-like particles : A versatile platform for cellular delivery and surface display. / Koho, Tiia; Ihalainen, Teemu O.; Stark, Marie; Uusi-Kerttula, Hanni; Wieneke, Ralph; Rahikainen, Rolle; Blazevic, Vesna; Marjomäki, Varpu; Tampé, Robert; Kulomaa, Markku S.; Hytönen, Vesa P.

In: European Journal of Pharmaceutics and Biopharmaceutics, Vol. 96, 21.07.2015, p. 22-31.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of the cellular intake of a gene expression inducer at high concentrations. / Tran, Huy; Oliveira, Samuel M.D. Dias; Goncalves, Nadia; Ribeiro, Andre S.

In: Molecular Biosystems, Vol. 11, No. 9, 20.07.2015, p. 2579-2587.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells. / Ojansivu, Miina; Vanhatupa, Sari; Björkvik, Leena; Häkkänen, Heikki; Kellomäki, Minna; Autio, Reija; Ihalainen, Janne A.; Hupa, Leena; Miettinen, Susanna.

In: Acta Biomaterialia, Vol. 21, 15.07.2015, p. 190-203.

Research output: Contribution to journalArticleScientificpeer-review

Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent. / Marjakangas, Jatta M.; Lakaniemi, Aino Maija; Koskinen, Perttu E. P.; Chang, Jo Shu; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 99, 05.07.2015, p. 48-54.

Research output: Contribution to journalArticleScientificpeer-review

Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts. / Nybond, Susanna; Karp, Matti; Yrjönen, Teijo; Tammela, Päivi.

In: Journal of Microbiological Methods, Vol. 114, 01.07.2015, p. 54-56.

Research output: Contribution to journalArticleScientificpeer-review

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid. / Oliveira, Samuel M. D.; Chandraseelan, Jerome G.; Häkkinen, Antti; Goncalves, Nadia S. M.; Yli-Harja, Olli; Startceva, Sofia; S. Ribeiro, Andre.

In: Molecular Biosystems, Vol. 11, No. 7, 01.07.2015, p. 1939-1945.

Research output: Contribution to journalArticleScientificpeer-review

Using shRNA experiments to validate gene regulatory networks. / Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin.

In: Genomics Data, Vol. 4, 01.06.2015, p. 123-126.

Research output: Contribution to journalArticleScientificpeer-review

O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs. / Liu, Jining; Jin, Chunsheng; Cherian, Reeja Maria; Karlsson, Niclas G.; Holgersson, Jan.

In: Journal of Biotechnology, Vol. 199, 01.04.2015, p. 77-89.

Research output: Contribution to journalArticleScientificpeer-review

Ageing-associated changes in the human DNA methylome : Genomic locations and effects on gene expression. / Marttila, Saara; Kananen, Laura; Häyrynen, Sergei; Jylhävä, Juulia; Nevalainen, Tapio; Hervonen, Antti; Jylhä, Marja; Nykter, Matti; Hurme, Mikko.

In: BMC Genomics, Vol. 16, No. 1, 179, 14.03.2015.

Research output: Contribution to journalArticleScientificpeer-review

Multi-stable dynamics of the non-adiabatic repressilator. / Potapov, Ilya; Zhurov, Boris; Volkov, Evgeny.

In: Journal of the Royal Society. Interface, Vol. 12, No. 104, 20141315, 06.03.2015.

Research output: Contribution to journalArticleScientificpeer-review

Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning. / Lehtonen, Soili I.; Taskinen, Barbara; Ojala, Elina; Kukkurainen, Sampo; Rahikainen, Rolle; Riihimäki, Tiina A.; Laitinen, Olli H.; Kulomaa, Markku S.; Hytönen, Vesa P.

In: Protein Engineering Design and Selection, Vol. 28, No. 1, 2015, p. 23-28.

Research output: Contribution to journalArticleScientificpeer-review

Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives. / Akimova, A. V.; Rychkov, G. N.; Grin, M. A.; Filippova, N. A.; Golovina, G. V.; Durandin, N. A.; Vinogradov, A. M.; Kokrashvili, T. A.; Mironov, A. F.; Shtil, A. A.; Kuzmin, V. A.

In: ACTA NATURAE, Vol. 7, No. 1, 2015, p. 109-116.

Research output: Contribution to journalArticleScientificpeer-review

Switchavidin : Reversible biotin-avidin-biotin bridges with high affinity and specificity. / Taskinen, Barbara; Zauner, Dominik; Lehtonen, Soili I.; Koskinen, Masi; Thomson, Chloe; Kähkönen, Niklas; Kukkurainen, Sampo; Määttä, Juha A E; Ihalainen, Teemu O.; Kulomaa, Markku S.; Gruber, Hermann J.; Hytönen, Vesa P.

In: Bioconjugate Chemistry, Vol. 25, No. 12, 17.12.2014, p. 2233-2243.

Research output: Contribution to journalArticleScientificpeer-review

The talin-integrin interface under mechanical stress. / Kukkurainen, Sampo; Määttä, Juha A.; Saeger, John; Valjakka, Jarkko; Vogel, Viola; Hytönen, Vesa P.

In: Molecular Biosystems, Vol. 10, No. 12, 01.12.2014, p. 3217-3228.

Research output: Contribution to journalArticleScientificpeer-review

Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography. / Rasappa, Sozaraj; Schulte, Lars; Borah, Dipu; Morris, Michael A.; Ndoni, Sokol.

In: Colloids and Interface Science Communications, Vol. 2, 01.10.2014, p. 1-5.

Research output: Contribution to journalArticleScientificpeer-review

Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production. / Praveenkumar, Ramasamy; Kim, Bohwa; Choi, Eunji; Lee, Kyubock; Cho, Sunja; Hyun, Ju Soo; Park, Ji Yeon; Lee, Young Chul; Lee, Hyun Uk; Lee, Jin Suk; Oh, You Kwan.

In: Bioprocess and Biosystems Engineering, Vol. 37, No. 10, 12.09.2014, p. 2083-2094.

Research output: Contribution to journalArticleScientificpeer-review

Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces. / Kurppa, Katri; Hytönen, Vesa P.; Nakari-Setälä, Tiina; Kulomaa, Markku S.; Linder, Markus B.

In: Colloids and Surfaces B: Biointerfaces, Vol. 120, 01.08.2014, p. 102-109.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure. / Ciranna, Alessandro; Pawar, Sudhanshu S.; Santala, Ville; Karp, Matti; van Niel, Ed W J.

In: Microbial Cell Factories, Vol. 13, No. 1, 48, 28.03.2014.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. / Kannisto, Matti; Aho, Tommi; Karp, Matti; Santala, Ville.

In: Applied and Environmental Microbiology, Vol. 80, No. 22, 2014, p. 7021-7027.

Research output: Contribution to journalArticleScientificpeer-review

Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. / Guglielmetti, Simone; Zanoni, Ivan; Balzaretti, Silvia; Miriani, Matteo; Taverniti, Valentina; de Noni, Ivano; Presti, Ilaria; Stuknyte, Milda; Scarafoni, Alessio; Arioli, Stefania; Iametti, Stefania; Bonomi, Francesco; Mora, Diego; Karp, Matti; Granucci, Francesca.

In: Applied and Environmental Microbiology, Vol. 80, No. 17, 2014, p. 5170-5177.

Research output: Contribution to journalArticleScientificpeer-review

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. / Emmert-Streib, Frank; Zhang, Shu Dong; Hamilton, Peter.

In: Genomics Data, Vol. 2, 2014, p. 37-39.

Research output: Contribution to journalArticleScientificpeer-review

TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. / Guglielmetti, Simone; Balzaretti, Silvia; Taverniti, Valentina; Miriani, Matteo; Milani, Christian; Scarafoni, Alessio; Corona, Silvia; Ciranna, Alessandro; Arioli, Stefania; Santala, Ville; Iametti, Stefania; Bonomi, Francesco; Ventura, Marco; Mora, Diego; Karp, Matti.

In: Applied and Environmental Microbiology, Vol. 80, No. 17, 2014, p. 5161-5169.

Research output: Contribution to journalArticleScientificpeer-review

Reversible biofunctionalization of surfaces with a switchable mutant of avidin. / Pollheimer, Philipp; Taskinen, Barbara; Scherfler, Andreas; Gusenkov, Sergey; Creus, Marc; Wiesauer, Philipp; Zauner, Dominik; Schöfberger, Wolfgang; Schwarzinger, Clemens; Ebner, Andreas; Tampé, Robert; Stutz, Hanno; Hytönen, Vesa P.; Gruber, Hermann J.

In: Bioconjugate Chemistry, Vol. 24, No. 10, 16.10.2013, p. 1656-1668.

Research output: Contribution to journalArticleScientificpeer-review

Interfacing cellular networks of S. cerevisiae and E. coli : Connecting dynamic and genetic information. / Matos Simoes, Ricardo de; Dehmer, Matthias; Emmert-Streib, Frank.

In: BMC Genomics, Vol. 14, No. 1, 324, 11.05.2013.

Research output: Contribution to journalArticleScientificpeer-review

Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. / Diban, Nazely; Haimi, Suvi; Bolhuis-Versteeg, Lydia; Teixeira, Sandra; Miettinen, Susanna; Poot, André; Grijpma, Dirk; Stamatialis, Dimitrios.

In: Acta Biomaterialia, Vol. 9, No. 5, 2013, p. 6450-6458.

Research output: Contribution to journalArticleScientificpeer-review

Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream. / Magarkar, Aniket; Stepniewski, Michal; Karakas, Esra; Rog, Tomasz; Yliperttula, Marjo; Urtti, Arto; Bunker, Alex.

Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2 2013. p. 576-578.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on Artificial Neural Networks. / Iosifidis, Alexandros; Tefas, Anastasios; Pitas, Ioannis.

IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 2013. p. 7-13.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on dynemes and discriminant learning. / Iosifidis, Alexandros; Tefas, Anastasios; Pitas, Ioannis.

2013 International Workshop on Biometrics and Forensics, IWBF 2013. 2013.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll atomic layer deposition for flexible substrates. / Lahtinen, K.; Maydannik, P.; Kääriäinen, T.; Seppänen, T.; Cameron, D. C.; Johansson, P.; Kraft, M.; Kuusipalo, J.

TAPPI International Conference on Nanotechnology 2013. TAPPI Press, 2013. p. 726-739.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Undercut edges for robust capillary self-alignment in hybrid microassembly. / Liimatainen, Ville; Sariola, Veikko; Zhou, Quan.

8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. 2013. p. 1088-1091 6559911.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Wear resistance of nanoparticle coatings on paperboard. / Stepien, Milena; Chinga-Carrasco, Gary; Saarinen, Jarkko J.; Teisala, Hannu; Tuominen, Mikko; Aromaa, Mikko; Haapanen, Janne; Kuusipalo, Jurkka; Mäkelä, Jyrki M.; Toivakka, Martti.

TAPPI International Conference on Nanotechnology 2013. TAPPI Press, 2013. p. 821-829.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Oxidative stress response and fatty acid changes associated with bioaccumulation of chromium [Cr(VI)] by a fresh water cyanobacterium Chroococcus sp. / Kumar, Muthukannan Satheesh; Praveenkumar, Ramasy; Ilavarasi, Asokraja; Rajeshwari, Kamaraj; Thajuddin, Nooruddin.

In: Biotechnology Letters, Vol. 34, No. 2, 02.2012, p. 247-251.

Research output: Contribution to journalArticleScientificpeer-review

Production of l-xylose from l-xylulose using Escherichia coli l-fucose isomerase. / Usvalampi, Anne; Turunen, Ossi; Valjakka, Jarkko; Pastinen, Ossi; Leisola, Matti; Nyyssölä, Antti.

In: ENZYME AND MICROBIAL TECHNOLOGY, Vol. 50, No. 1, 05.01.2012, p. 71-76.

Research output: Contribution to journalArticleScientificpeer-review

DNA family shuffling within the chicken avidin protein family - A shortcut to more powerful protein tools. / Niederhauser, Barbara; Siivonen, Joonas; Määttä, Juha A.; Jänis, Janne; Kulomaa, Markku S.; Hytönen, Vesa P.

In: Journal of Biotechnology, Vol. 157, No. 1, 01.2012, p. 38-49.

Research output: Contribution to journalArticleScientificpeer-review

Identification of proprotein convertase substrates using genome-wide expression correlation analysis. / Turpeinen, Hannu; Kukkurainen, Sampo; Pulkkinen, Kati; Kauppila, Timo; Ojala, Kalle; Hytönen, Vesa P.; Pesu, Marko.

In: BMC Genomics, Vol. 12, 618, 20.12.2011.

Research output: Contribution to journalArticleScientificpeer-review

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage. / Amps, Katherine; Andrews, Peter W.; Anyfantis, George; Armstrong, Lyle; Avery, Stuart; Baharvand, Hossein; Baker, Julie; Baker, Duncan; Munoz, Maria B.; Beil, Stephen; Benvenisty, Nissim; Ben-Yosef, Dalit; Biancotti, Juan Carlos; Bosman, Alexis; Brena, Romulo Martin; Brison, Daniel; Caisander, Gunilla; Camarasa, Marãa V.; Chen, Jieming; Chiao, Eric; Choi, Young Min; Choo, Andre B H; Collins, Daniel; Colman, Alan; Crook, Jeremy M.; Daley, George Q.; Dalton, Anne; De Sousa, Paul A.; Denning, Chris; Downie, Janet; Dvorak, Petr; Montgomery, Karen D.; Feki, Anis; Ford, Angela; Fox, Victoria; Fraga, Ana M.; Frumkin, Tzvia; Ge, Lin; Gokhale, Paul J.; Golan-Lev, Tamar; Gourabi, Hamid; Gropp, Michal; Guangxiu, Lu; Hampl, Ales; Harron, Katie; Healy, Lyn; Herath, Wishva; Holm, Frida; Hovatta, Outi; Hyllner, Johan; Inamdar, Maneesha S.; Irwanto, Astrid Kresentia; Ishii, Tetsuya; Jaconi, Marisa; Jin, Ying; Kimber, Susan; Kiselev, Sergey; Knowles, Barbara B.; Kopper, Oded; Kukharenko, Valeri; Kuliev, Anver; Lagarkova, Maria A.; Laird, Peter W.; Lako, Majlinda; Laslett, Andrew L.; Lavon, Neta; Lee, Dong Ryul; Lee, Jeoung Eun; Li, Chunliang; Lim, Linda S.; Ludwig, Tenneille E.; Ma, Yu; Maltby, Edna; Mateizel, Ileana; Mayshar, Yoav; Mileikovsky, Maria; Minger, Stephen L.; Miyazaki, Takamichi; Moon, Shin Yong; Moore, Harry; Mummery, Christine; Nagy, Andras; Nakatsuji, Norio; Narwani, Kavita; Oh, Steve K W; Oh, Sun Kyung; Olson, Cia; Otonkoski, Timo; Pan, Fei; Park, In Hyun; Pells, Steve; Pera, Martin F.; Pereira, Lygia V.; Qi, Ouyang; Raj, Grace Selva; Reubinoff, Benjamin; Robins, Alan; Robson, Paul; Rossant, Janet; Salekdeh, Ghasem H.; Schulz, Thomas C.; Sermon, Karen; Mohamed, Jameelah Sheik; Shen, Hui; Sherrer, Eric; Sidhu, Kuldip; Sivarajah, Shirani; Skottman, Heli; Spits, Claudia; Stacey, Glyn N.; Strehl, Raimund; Strelchenko, Nick; Suemori, Hirofumi; Sun, Bowen; Suuronen, Riitta; Takahashi, Kazutoshi; Tuuri, Timo; Venu, Parvathy; Verlinsky, Yuri; Oostwaard, Dorien Ward Van; Weisenberger, Daniel J.; Wu, Yue; Yamanaka, Shinya; Young, Lorraine; Zhou, Qi.

In: Nature Biotechnology, Vol. 29, No. 12, 12.2011, p. 1132-1144.

Research output: Contribution to journalArticleScientificpeer-review

Versatile bio-ink for covalent immobilization of chimeric avidin on sol-gel substrates. / Heikkinen, Jarkko J.; Kivimäki, Liisa; Määttä, Juha A E; Mäkelä, Inka; Hakalahti, Leena; Takkinen, Kristiina; Kulomaa, Markku S.; Hytönen, Vesa P.; Hormi, Osmo E O.

In: Colloids and Surfaces B: Biointerfaces, Vol. 87, No. 2, 15.10.2011, p. 409-414.

Research output: Contribution to journalArticleScientificpeer-review

Hybrid nanoparticle design based on cationized gelatin and the polyanions dextran sulfate and chondroitin sulfate for ocular gene therapy. / Zorzi, Giovanni Konat; Párraga, Jenny Evelin; Seijo, Begoña; Sánchez, Alejandro.

In: MACROMOLECULAR BIOSCIENCE, Vol. 11, No. 7, 07.07.2011, p. 905-913.

Research output: Contribution to journalArticleScientificpeer-review

Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein. / Riihimäki, Tiina A.; Hiltunen, Soili; Rangl, Martina; Nordlund, Henri R.; Määttä, Juha A.E.; Ebner, Andreas; Hinterdorfer, Peter; Kulomaa, Markku S.; Takkinen, Kristiina; Hytönen, Vesa P.

In: BMC BIOTECHNOLOGY, Vol. 11, 64, 09.06.2011.

Research output: Contribution to journalArticleScientificpeer-review

Networks for systems biology : Conceptual connection of data and function. / Emmert-Streib, F.; Dehmer, M.

In: IET Systems Biology, Vol. 5, No. 3, 05.2011, p. 185-207.

Research output: Contribution to journalArticleScientificpeer-review

Chimeric avidin shows stability against harsh chemical conditions-biochemical analysis and 3D structure. / Määttä, Juha A.E.; Eisenberg-Domovich, Yael; Nordlund, Henri R.; Hayouka, Ruchama; Kulomaa, Markku S.; Livnah, Oded; Hytönen, Vesa P.

In: Biotechnology and Bioengineering, Vol. 108, No. 3, 03.2011, p. 481-490.

Research output: Contribution to journalArticleScientificpeer-review

Local network-based measures to assess the inferability of different regulatory networks. / Emmert-Streib, F.; Altay, G.

In: IET Systems Biology, Vol. 4, No. 4, ISBEAT000004000004000277000001, 07.2010, p. 277-288.

Research output: Contribution to journalArticleScientificpeer-review

Photostable second-harmonic generation from a single KTiOPO4 nanocrystal for nonlinear microscopy. / Le Xuan, Loc; Zhou, Chunyuan; Slablab, Abdallah; Chauvat, Dominique; Tard, Cédric; Perruchas, Sandrine; Gacoin, Thierry; Villeval, Philippe; Roch, Jean-François.

In: Small, Vol. 4, No. 9, 09.2008, p. 1332-1336.

Research output: Contribution to journalArticleScientificpeer-review

Modeling of anaerobic degradation of solid slaughterhouse waste : Inhibition effects of long-chain fatty acids or ammonia. / Lokshina, L. Y.; Vavilin, V. A.; Salminen, E.; Rintala, J.

In: Applied Biochemistry and Biotechnology, Vol. 109, No. 1-3, 04.2003, p. 15-32.

Research output: Contribution to journalArticleScientificpeer-review

Start-up and Operation of Laboratory-Scale Thermophilic Upflow Anaerobic Sludge Blanket Reactors Treating Vegetable Processing Wastewaters. / Lepistö, Satu S.; Rintala, Jukka A.

In: Journal of Chemical Technology and Biotechnology, Vol. 68, No. 3, 03.1997, p. 331-339.

Research output: Contribution to journalArticleScientificpeer-review

A two-stage thermophilic anaerobic process for the treatment of source sorted household solid waste. / Rintala, Jukka A.; Ahring, Birgitte K.

In: Biotechnology Letters, Vol. 16, No. 10, 10.1994, p. 1097-1102.

Research output: Contribution to journalArticleScientificpeer-review

Thermophilic anaerobic digestion of source-sorted household solid waste : the effects of enzyme additions. / Rintala, Jukka A.; Ahring, Birgitte K.

In: Applied Microbiology and Biotechnology, Vol. 40, No. 6, 02.1994, p. 916-919.

Research output: Contribution to journalArticleScientificpeer-review