Covalent immobilization of luminescent oxygen indicators reduces cytotoxicity

Välimäki, H., Hyvärinen, T., Leivo, J., Iftikhar, H., Pekkanen-Mattila, M., Rajan, D. K., Verho, J., Kreutzer, J., Ryynänen, T., Pirhonen, J., Aalto-Setälä, K., Kallio, P., Narkilahti, S. & Lekkala, J., 1 Jun 2020, In : BIOMEDICAL MICRODEVICES. 22, 2, 41.

Research output: Contribution to journalArticleScientificpeer-review

Paclitaxel, carboplatin and 1,25-D3 inhibit proliferation of ovarian cancer cells in vitro

Kuittinen, T., Rovio, P., Luukkaala, T., Laurila, M., Grénman, S., Kallioniemi, A. & Mäenpää, J., 1 Jun 2020, In : Anticancer Research. 40, 6, p. 3129-3138 10 p.

Research output: Contribution to journalArticleScientificpeer-review

All-Optical Electrophysiology Refines Populations of In Silico Human iPSC-CMs for Drug Evaluation

Paci, M., Passini, E., Klimas, A., Severi, S., Hyttinen, J., Rodriguez, B. & Entcheva, E., 19 May 2020, In : Biophysical Journal. 118, 10, p. 2596-2611 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S. & Ribeiro, A. S., 1 May 2020, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 194515.

Research output: Contribution to journalArticleScientificpeer-review

High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants

Vanharanta, L., Peränen, J., Pfisterer, S. G., Enkavi, G., Vattulainen, I. & Ikonen, E., 1 May 2020, In : Traffic. 21, 5, p. 386-397 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

Research output: Contribution to journalReview ArticleScientificpeer-review

Utilizing Gelatinized Starchy Waste from Rice Noodle Factory as Substrate for L(+)-Lactic Acid Production by Amylolytic Lactic Acid Bacterium Enterococcus faecium K-1

Unban, K., Khanongnuch, R., Kanpiengjai, A., Shetty, K. & Khanongnuch, C., May 2020, In : Applied Biochemistry and Biotechnology.

Research output: Contribution to journalArticleScientificpeer-review

Evaluation of scaffold microstructure and comparison of cell seeding methods using micro-computed tomography-based tools

Palmroth, A., Pitkänen, S., Hannula, M., Paakinaho, K., Hyttinen, J., Miettinen, S. & Kellomäki, M., 1 Apr 2020, In : Journal of the Royal Society. Interface. 17, 165, 12 p., 20200102.

Research output: Contribution to journalArticleScientificpeer-review

Mixed carbon substrates: a necessary nuisance or a missed opportunity?

Liu, N., Santala, S. & Stephanopoulos, G., 1 Apr 2020, In : CURRENT OPINION IN BIOTECHNOLOGY. 62, p. 15-21 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

The effect of start-up on energy recovery and compositional changes in brewery wastewater in bioelectrochemical systems

Haavisto, J. M., Kokko, M. E., Lakaniemi, A. M., Sulonen, M. L. K. & Puhakka, J. A., 1 Apr 2020, In : BIOELECTROCHEMISTRY. 132, 8 p., 107402.

Research output: Contribution to journalArticleScientificpeer-review

Utilizing Neurons for Digital Logic Circuits: A Molecular Communications Analysis

Adonias, G. L., Yastrebova, A., Barros, M. T., Koucheryavy, Y., Cleary, F. & Balasubramaniam, S., 1 Apr 2020, In : IEEE Transactions on Nanobioscience. 19, 2, p. 224-236 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Sequential Collinear Photofragmentation and Atomic Absorption Spectroscopy for Online Laser Monitoring of Triatomic Metal Species

Viljanen, J., Kalmankoski, K., Contreras, V., Sarin, J. K., Sorvajärvi, T., Kinnunen, H., Enestam, S. & Toivonen, J., 18 Jan 2020, In : Sensors (Basel, Switzerland). 20, 2, 14 p., 533.

Research output: Contribution to journalArticleScientificpeer-review

A concise synthesis of carbasugars isolated from Streptomyces lincolnensis

Holmstedt, S. & Candeias, N. R., 2020, In : Tetrahedron. 131346.

Research output: Contribution to journalArticleScientificpeer-review

Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films

Rebelo Calejo, T., Vuorenpää, H., Vuorimaa-Laukkanen, E., Kallio, P., Aalto-Setälä, K., Miettinen, S., Skottman, H., Kellomäki, M. & Juuti-Uusitalo, K., 2020, In : Acta Biomaterialia. 101, p. 327-343 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience. 11, 13, p. 1914–1924 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Multiphoton microscopy of the dermoepidermal junction and automated identification of dysplastic tissues with deep learning

Huttunen, M. J., Hristu, R., Dumitru, A., Floroiu, I., Costache, M. & Stanciu, S. G., 2020, In : Biomedical Optics Express. 11, 1, p. 186-199 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex

Liekkinen, J., Enkavi, G., Javanainen, M., Olmeda, B., Pérez-Gil, J. & Vattulainen, I., 2020, In : JOURNAL OF MOLECULAR BIOLOGY. 432, 10, p. 3251-3268 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Surface Stabilization and Dissolution Rate Improvement of Amorphous Compacts with Thin Polymer Coatings: Can We Have It All?

Novakovic, D., Peltonen, L., Isomäki, A., Fraser-Miller, S. J., Nielsen, L. H., Laaksonen, T. & Strachan, C. J., 2020, In : Molecular Pharmaceutics. 17, 4, p. 1248-1260 13 p.

Research output: Contribution to journalArticleScientificpeer-review

The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2

Legrand, C., Saleppico, R., Sticht, J., Lolicato, F., Müller, H. M., Wegehingel, S., Dimou, E., Steringer, J. P., Ewers, H., Vattulainen, I., Freund, C. & Nickel, W., 2020, In : Communications biology. 3, 1, 16 p., 141.

Research output: Contribution to journalArticleScientificpeer-review

Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

Research output: Contribution to journalArticleScientificpeer-review

Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices

Nymark, P., Bakker, M., Dekkers, S., Franken, R., Fransman, W., García-Bilbao, A., Greco, D., Gulumian, M., Hadrup, N., Halappanavar, S., Hongisto, V., Hougaard, K. S., Jensen, K. A., Kohonen, P., Koivisto, A. J., Dal Maso, M., Oosterwijk, T., Poikkimäki, M., Rodriguez-Llopis, I., Stierum, R., Sørli, J. B. & Grafström, R., 2020, In : Small. 16, 6, 13 p., 1904749.

Research output: Contribution to journalReview ArticleScientificpeer-review

Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding

Losoi, P. S., Santala, V. P. & Santala, S. M., 20 Dec 2019, In : ACS Synthetic Biology. 8, 12, p. 2642-2650 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies

Intosalmi, J., Scott, A. C., Hays, M., Flann, N., Yli-Harja, O., Lähdesmäki, H., Dudley, A. M. & Skupin, A., 19 Dec 2019, In : BMC Molecular and Cell Biology. 20, 1, 13 p., 59.

Research output: Contribution to journalArticleScientificpeer-review

Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology: A Cooperative Service Model

Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 17 Dec 2019, In : Frontiers in cell and developmental biology. 7, 349.

Research output: Contribution to journalArticleScientificpeer-review

Environmental monitoring with distributed mesh networks: An overview and practical implementation perspective for urban scenario

Ometov, A., Bezzateev, S., Voloshina, N., Masek, P. & Komarov, M., 2 Dec 2019, In : Sensors (Switzerland). 19, 24, 19 p., 5548.

Research output: Contribution to journalArticleScientificpeer-review

Key drivers of cloud response to surface-active organics

Lowe, S. J., Partridge, D. G., Davies, J. F., Wilson, K. R., Topping, D. & Riipinen, I., 1 Dec 2019, In : Nature Communications. 10, 1, 12 p., 5214.

Research output: Contribution to journalArticleScientificpeer-review

Programmable responsive hydrogels inspired by classical conditioning algorithm

Zhang, H., Zeng, H., Priimägi, A. & Ikkala, O., 1 Dec 2019, In : Nature Communications. 10, 1, 3267.

Research output: Contribution to journalArticleScientificpeer-review

The role of highly oxygenated organic molecules in the Boreal aerosol-cloud-climate system

Roldin, P., Ehn, M., Kurtén, T., Olenius, T., Rissanen, M. P., Sarnela, N., Elm, J., Rantala, P., Hao, L., Hyttinen, N., Heikkinen, L., Worsnop, D. R., Pichelstorfer, L., Xavier, C., Clusius, P., Öström, E., Petäjä, T., Kulmala, M., Vehkamäki, H., Virtanen, A., Riipinen, I. & Boy, M., 1 Dec 2019, In : Nature Communications. 10, 1, 4370.

Research output: Contribution to journalArticleScientificpeer-review

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

Research output: Contribution to journalArticleScientificpeer-review

Spectral object recognition in hyperspectral holography with complex-domain denoising

Shevkunov, I., Katkovnik, V., Claus, D., Pedrini, G., Petrov, N. V. & Egiazarian, K., 26 Nov 2019, In : Sensors (Switzerland). 19, 23, 10 p., 5188.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion

Eerola, S. K., Santio, N. M., Rinne, S., Kouvonen, P., Corthals, G. L., Scaravilli, M., Scala, G., Serra, A., Greco, D., Ruusuvuori, P., Latonen, L., Rainio, E. M., Visakorpi, T. & Koskinen, P. J., 15 Nov 2019, In : CELL COMMUNICATION AND SIGNALING. 17, 1, 148.

Research output: Contribution to journalArticleScientificpeer-review

Statistical evaluation of barkhausen noise testing (BNT) for ground samples

Tomkowski, R., Sorsa, A., Santa-Aho, S., Lundin, P. & Vippola, M., 1 Nov 2019, In : Sensors (Switzerland). 19, 21, 4716.

Research output: Contribution to journalArticleScientificpeer-review

Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

Bahrudeen, M. N. M., Chauhan, V., Palma, C. S. D., Oliveira, S. M. D., Kandavalli, V. K. & Ribeiro, A. S., 22 Oct 2019, In : Journal of Microbiological Methods. 166, 105745.

Research output: Contribution to journalArticleScientificpeer-review

Improved water services cooperation through clarification of rules and roles

Inha, L. M., Katko, T. S. & Rajala, R. P., 19 Oct 2019, In : Water (Switzerland). 11, 10, 2172.

Research output: Contribution to journalArticleScientificpeer-review

Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms

Hajdu-Rahkama, R., Ahoranta, S., Lakaniemi, A-M. & Puhakka, J. A., 15 Oct 2019, In : Biochemical Engineering Journal. 150, 107286.

Research output: Contribution to journalArticleScientificpeer-review

Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission

Saegusa, T., Sakai, H., Nagashima, H., Kobori, Y., Tkachenko, N. V. & Hasobe, T., 18 Sep 2019, In : Journal of the American Chemical Society. 141, 37, p. 14720-14727 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of nanofibrillated cellulose hydrogels on adipose tissue extract and hepatocellular carcinoma cell spheroids in freeze-drying

Auvinen, V-V., Merivaara, A., Kiiskinen, J., Paukkonen, H., Laurén, P., Hakkarainen, T., Koivuniemi, R., Sarkanen, R., Ylikomi, T., Laaksonen, T. & Yliperttula, M., 15 Sep 2019, In : Cryobiology.

Research output: Contribution to journalArticleScientificpeer-review

An efficient auxin-inducible degron system with low basal degradation in human cells

Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Behavior of the DPH fluorescence probe in membranes perturbed by drugs

Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.

Research output: Contribution to journalArticleScientificpeer-review

Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes

Kreutzer, J., Viehrig, M., Pölönen, R. P., Zhao, F., Ojala, M., Aalto-Setälä, K. & Kallio, P., 23 Aug 2019, In : BIOMECHANICS AND MODELING IN MECHANOBIOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels

Wang, S., Nawale, G. N., Oommen, O. P., Hilborn, J. & Varghese, O. P., 21 Aug 2019, In : Polymer Chemistry. 10, 31, p. 4322-4327 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium

Johansson, J. K., Karema-Jokinen, V. I., Hakanen, S., Jylhä, A., Uusitalo, H., Vihinen-Ranta, M., Skottman, H., Ihalainen, T. O. & Nymark, S., 15 Aug 2019, In : BMC BIOLOGY. 17, 1, 63.

Research output: Contribution to journalArticleScientificpeer-review

Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications

Pitkänen, S., Paakinaho, K., Pihlman, H., Ahola, N., Hannula, M., Asikainen, S., Manninen, M., Morelius, M., Keränen, P., Hyttinen, J., Kellomäki, M., Laitinen-Vapaavuori, O. & Miettinen, S., 5 Aug 2019, In : European cells & materials. 38, p. 35-50 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Alkane and wax ester production from lignin-related aromatic compounds

Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 1 Aug 2019, In : Biotechnology and Bioengineering. 116, 8, p. 1934-1945 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders

Smolander, J., Dehmer, M. & Emmert-Streib, F., 1 Jul 2019, In : FEBS Open Bio. 9, 7, p. 1232-1248 17 p.

Research output: Contribution to journalArticleScientificpeer-review

An architectural understanding of natural sway frequencies in trees

Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

Research output: Contribution to journalArticleScientificpeer-review

Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection

Kadekar, S., Nawale, G. N., Karlsson, K., Ålander, C., Oommen, O. P. & Varghese, O. P., 7 Jun 2019, In : Molecular Therapy - Nucleic Acids. 16, p. 597-604 8 p.

Research output: Contribution to journalArticleScientificpeer-review

The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers

Lolicato, F., Joly, L., Martinez-Seara, H., Fragneto, G., Scoppola, E., Baldelli Bombelli, F., Vattulainen, I., Akola, J. & Maccarini, M., 7 Jun 2019, In : Small. 15, 23, 1805046.

Research output: Contribution to journalArticleScientificpeer-review

Methods for simultaneous robot-world-hand–eye calibration: A comparative study

Ali, I., Suominen, O., Gotchev, A. & Morales, E. R., 2 Jun 2019, In : Sensors (Switzerland). 19, 12, 2837.

Research output: Contribution to journalArticleScientificpeer-review

Technical Note: Noise models for virtual clinical trials of digital breast tomosynthesis

Borges, L. R., Barufaldi, B., Caron, R. F., Bakic, P. R., Foi, A., Maidment, A. D. A. & Vieira, M. A. C., 1 Jun 2019, In : Medical Physics. 46, 6, p. 2683-2689 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons

Habib, M., Serebryannikov, A. E., Caglayan, H., Vandenbosch, G. A. E. & Ozbay, E., Jun 2019, In : Plasmonics. 14, 3, p. 721-729 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current

Kekonen, A., Bergelin, M., Johansson, M., Kumar Joon, N., Bobacka, J. & Viik, J., 31 May 2019, In : Sensors. 19, 11

Research output: Contribution to journalArticleScientificpeer-review

Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes

Manna, M., Nieminen, T. & Vattulainen, I., 6 May 2019, In : ANNUAL REVIEW OF BIOPHYSICS. 48, p. 421-439 19 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

Research output: Contribution to journalArticleScientificpeer-review

Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times

Peltokangas, M., Suominen, V., Vakhitov, D., Korhonen, J., Verho, J., Mattila, V. M., Romsi, P., Lekkala, J., Vehkaoja, A. & Oksala, N., May 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1058-1065

Research output: Contribution to journalArticleScientificpeer-review

Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution

Kerst, T., Malmbeck, R., lal Banik, N. L. & Toivonen, J., 1 Apr 2019, In : Sensors (Switzerland). 19, 7, 1602.

Research output: Contribution to journalArticleScientificpeer-review

Positioning information privacy in intelligent transportation systems: An overview and future perspective

Ometov, A., Bezzateev, S., Davydov, V., Shchesniak, A., Masek, P., Lohan, E. S. & Koucheryavy, Y., 1 Apr 2019, In : Sensors. 19, 7, 1603.

Research output: Contribution to journalArticleScientificpeer-review

Deep Learning in Image Cytometry: A Review

Gupta, A., Harrison, P. J., Wieslander, H., Pielawski, N., Kartasalo, K., Partel, G., Solorzano, L., Suveer, A., Klemm, A. H., Spjuth, O., Sintorn, I. M. & Wählby, C., Apr 2019, In : Cytometry Part A. 95, 4, p. 366-380

Research output: Contribution to journalReview ArticleScientificpeer-review

Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules

Luo, J., Lehtinen, T., Efimova, E., Santala, V. & Santala, S., 11 Mar 2019, In : Microbial Cell Factories. 18, 1, 13 p., 48.

Research output: Contribution to journalArticleScientificpeer-review

Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

Rissanen, A. J., Peura, S., Mpamah, P. A., Taipale, S., Tiirola, M., Biasi, C., Mäki, A. & Nykänen, H., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5

Research output: Contribution to journalArticleScientificpeer-review

Metabolic syndrome is associated with decreased heart rate variability in a sex-dependent manner: a comparison between 252 men and 249 women

Kangas, P., Tikkakoski, A., Uitto, M., Viik, J., Bouquin, H., Niemelä, O., Mustonen, J. & Pörsti, I., Mar 2019, In : Clinical Physiology and Functional Imaging. 39, 2, p. 160-167 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

Liimatainen, K., Kananen, L., Latonen, L. & Ruusuvuori, P., 15 Feb 2019, In : BMC Bioinformatics. 20, 1, 80.

Research output: Contribution to journalArticleScientificpeer-review

Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

Startceva, S., Kandavalli, V. K., Visa, A. & Ribeiro, A. S., 1 Feb 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 119-128 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Detection of Pancreatic Cancer by Urine Volatile Organic Compound Analysis

Nissinen, S. I., Roine, A., Hokkinen, L., Karjalainen, M., Venäläinen, M., Helminen, H., Niemi, R., Lehtimäki, T., Rantanen, T. & Oksala, N., Jan 2019, In : Anticancer Research. 39, 1, p. 73-79 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Bioactive glass-ceramics: From macro to nano

Massera, J., 2019, Nanostructured Biomaterials for Regenerative Medicine. Woodhead Publishing, p. 275-292 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Disease modeling of a mutation in α-actinin 2 guides clinical therapy in hypertrophic cardiomyopathy

Prondzynski, M., Lemoine, M. D., Zech, A. T. L., Horváth, A., Di Mauro, V., Koivumäki, J. T., Kresin, N., Busch, J., Krause, T., Krämer, E., Schlossarek, S., Spohn, M., Friedrich, F. W., Münch, J., Laufer, S. D., Redwood, C., Volk, A. E., Hansen, A., Mearini, G., Catalucci, D., Meyer, C., Christ, T., Patten, M., Eschenhagen, T. & Carrier, L., 2019, In : EMBO Molecular Medicine. e11115.

Research output: Contribution to journalArticleScientificpeer-review

Do bone geometric properties of the proximal femoral diaphysis reflect loading history, muscle properties, or body dimensions?

Niinimäki, S., Narra, N., Härkönen, L., Abe, S., Nikander, R., Hyttinen, J., Knüsel, C. J. & Sievänen, H., 2019, In : American Journal of Human Biology. e23246.

Research output: Contribution to journalArticleScientificpeer-review

L1000 viewer: A search engine and Web interface for the LINCS data repository

Musa, A., Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2019, In : Frontiers in Genetics. 10, JUN, 557.

Research output: Contribution to journalArticleScientificpeer-review

Mechanical impact stimulation platform tailored for high-resolution light microscopy

Halonen, H. T., Hyttinen, J. A. K. & Ihalainen, T. O., 2019, In : HEALTH AND TECHNOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic profiling of water-soluble compounds from the extracts of dark septate endophytic fungi (DSE) isolated from scots pine (Pinus sylvestris L.) seedlings using UPLC–orbitrap–MS

Tienaho, J., Karonen, M., Muilu–Mäkelä, R., Wähälä, K., Denegri, E. L., Franzén, R., Karp, M., Santala, V. & Sarjala, T., 2019, In : Molecules. 24, 12, 2330.

Research output: Contribution to journalArticleScientificpeer-review

Optical wireless cochlear implants

Trevlakis, S. E., Boulogeorgos, A. A. A., Sofotasios, P. C., Muhaidat, S. & Karagiannidis, G. K., 2019, In : Biomedical Optics Express. 10, 2, p. 707-730 24 p.

Research output: Contribution to journalArticleScientificpeer-review

O2-requiring molecular reporters of gene expression for anaerobic microorganisms

Guglielmetti, S., Santala, V., Mangayil, R., Ciranna, A. & Karp, M. T., 2019, In : Biosensors and Bioelectronics. 123, p. 1-6 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer gene regulatory network inferred from RNA-seq data

Moore, D., Simoes, R. D. M., Dehmer, M. & Emmert-Streib, F., 2019, In : CURRENT GENOMICS. 20, 1, p. 38-48 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study

Glazko, G., Zybailov, B., Emmert-Streib, F., Baranova, A. & Rahmatallah, Y., 2019, In : PLoS ONE. 14, 8, e0221444.

Research output: Contribution to journalArticleScientificpeer-review

Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits

Martins, D. P., Barros, M. T. & Balasubramaniam, S., 2019, (Accepted/In press) In : IEEE Transactions on Nanobioscience.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent moderate-risk mutations in Finnish breast and ovarian cancer patients

Nurmi, A., Muranen, T. A., Pelttari, L. M., Kiiski, J. I., Heikkinen, T., Lehto, S., Kallioniemi, A., Schleutker, J., Bützow, R., Blomqvist, C., Aittomäki, K. & Nevanlinna, H., 2019, In : International Journal of Cancer.

Research output: Contribution to journalArticleScientificpeer-review

Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds

Baino, F., Barberi, J., Fiume, E., Orlygsson, G., Massera, J. & Verné, E., 2019, In : Journal of Healthcare Engineering. 2019, 5153136.

Research output: Contribution to journalArticleScientificpeer-review

Synthesis of 6,12-disubstituted methanodibenzo[b,f ][1,5]dioxocins: Pyrrolidine catalyzed self-condensation of 2′-Hydroxyacetophenones

Assoah, B., Riihonen, V., Vale, J. R., Valkonen, A. & Candeias, N. R., 2019, In : Molecules. 24, 13, 2405.

Research output: Contribution to journalArticleScientificpeer-review

SCIP: a single-cell image processor toolbox

Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Beaming random lasers with soliton control

Perumbilavil, S., Piccardi, A., Barboza, R., Buchnev, O., Kauranen, M., Strangi, G. & Assanto, G., 1 Dec 2018, In : Nature Communications. 9, 1, 7 p., 3863.

Research output: Contribution to journalArticleScientificpeer-review

Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch

Santala, S., Efimova, E. & Santala, V., 1 Dec 2018, In : Metabolic Engineering Communications. 7, e00078.

Research output: Contribution to journalArticleScientificpeer-review

Machine learning plastic deformation of crystals

Salmenjoki, H., Alava, M. J. & Laurson, L., 1 Dec 2018, In : Nature Communications. 9, 1, 5307.

Research output: Contribution to journalArticleScientificpeer-review

Normalization of force to muscle cross-sectional area: A helpful attempt to reduce data scattering in contractility studies?

Pecha, S., Koivumäki, J., Geelhoed, B., Kempe, R., Berk, E., Engel, A., Reichenspurner, H., Eschenhagen, T., Ravens, U., Kaumann, A. & Christ, T., 1 Dec 2018, In : Acta Physiologica. 224, 4, 4 p., e13202.

Research output: Contribution to journalEditorialScientificpeer-review

Structural basis of actin monomer re-charging by cyclase-Associated protein

Kotila, T., Kogan, K., Enkavi, G., Guo, S., Vattulainen, I., Goode, B. L. & Lappalainen, P., 1 Dec 2018, In : Nature Communications. 9, 1, 1892.

Research output: Contribution to journalArticleScientificpeer-review

Bi-directional cell-pericellular matrix interactions direct stem cell fate

Ferreira, S. A., Motwani, M. S., Faull, P. A., Seymour, A. J., Yu, T. T. L., Enayati, M., Taheem, D. K., Salzlechner, C., Haghighi, T., Kania, E. M., Oommen, O. P., Ahmed, T., Loaiza, S., Parzych, K., Dazzi, F., Varghese, O. P., Festy, F., Grigoriadis, A. E., Auner, H. W., Snijders, A. P., Bozec, L. & Gentleman, E., Dec 2018, In : Nature Communications. 9, 1, 12 p., 4049.

Research output: Contribution to journalArticleScientificpeer-review

The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration

Gasik, M., Zühlke, A., Haaparanta, A-M., Muhonen, V., Laine, K., Bilotsky, Y., Kellomäki, M. & Kiviranta, I., 30 Nov 2018, In : Frontiers in Bioengineering and Biotechnology. 6, NOV, 187.

Research output: Contribution to journalArticleScientificpeer-review

Machine learning analysis of extreme events in optical fibre modulation instability

Närhi, M., Salmela, L., Toivonen, J., Billet, C., Dudley, J. M. & Genty, G., 22 Nov 2018, In : Nature Communications. 9, 1, 1 p.

Research output: Contribution to journalArticleScientificpeer-review

M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components

Rinne, J., Keskinen, J., Berger, P. R., Lupo, D. & Valkama, M., 16 Nov 2018, In : Sensors (Basel, Switzerland). 18, 11

Research output: Contribution to journalArticleScientificpeer-review

Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters

Chevrier, D. M., Raich, L., Rovira, C., Das, A., Luo, Z., Yao, Q., Chatt, A., Xie, J., Jin, R., Akola, J. & Zhang, P., 14 Nov 2018, In : Journal of the American Chemical Society. 140, 45, p. 15430-15436 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Understanding Dissolution and Crystallization with Imaging: A Surface Point of View

Novakovic, D., Isomäki, A., Pleunis, B., Fraser-Miller, S. J., Peltonen, L., Laaksonen, T. & Strachan, C. J., 5 Nov 2018, In : Molecular Pharmaceutics. 15, 11, p. 5361-5373 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Super-resolution microscopy for biological specimens: Lensless phase retrieval in noisy conditions

Shevkunov, I., Katkovnik, V., Petrov, N. V. & Egiazarian, K., 1 Nov 2018, In : Biomedical Optics Express. 9, 11, p. 5511-5523 13 p., #340805.

Research output: Contribution to journalArticleScientificpeer-review

How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative

Mobarak, E., Javanainen, M., Kulig, W., Honigmann, A., Sezgin, E., Aho, N., Eggeling, C., Rog, T. & Vattulainen, I., Nov 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 11, p. 2436-2445

Research output: Contribution to journalArticleScientificpeer-review

Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology

Calderón-Garcidueñas, L., González-Maciel, A., Reynoso-Robles, R., Kulesza, R. J., Mukherjee, P. S., Torres-Jardón, R., Rönkkö, T. & Doty, R. L., 1 Oct 2018, In : Environmental Research. 166, p. 348-362 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel osteoconductive β-tricalcium phosphate/poly(L-lactide-co-e-caprolactone) scaffold for bone regeneration: a study in a rabbit calvarial defect

Pihlman, H., Keränen, P., Paakinaho, K., Linden, J., Hannula, M., Manninen, I. K., Hyttinen, J., Manninen, M. & Laitinen-Vapaavuori, O., 1 Oct 2018, In : Journal of Materials Science: Materials in Medicine. 29, 10, 156.

Research output: Contribution to journalArticleScientificpeer-review

Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression

Martins, D. P., Leetanasaksakul, K., Barros, M. T., Thamchaipenet, A., Donnelly, W. & Balasubramaniam, S., Oct 2018, In : IEEE Transactions on Nanobioscience. 17, 4, p. 533-542 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Quantifying branch architecture of tropical trees using terrestrial LiDAR and 3D modelling

Lau, A., Bentley, L. P., Martius, C., Shenkin, A., Bartholomeus, H., Raumonen, P., Malhi, Y., Jackson, T. & Herold, M., Oct 2018, In : Trees - Structure and Function. 32, 5, p. 1219-1231 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater

Dessì, P., Porca, E., Lakaniemi, A-M., Collins, G. & Lens, P. N. L., 15 Sep 2018, In : Biochemical Engineering Journal. 137, p. 214-221 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

Research output: Contribution to journalArticleScientificpeer-review

Computational modeling of electrophysiology and pharmacotherapy of atrial fibrillation: Recent advances and future challenges

Vagos, M. R. S. S., van Herck, I. G. M., Sundnes, J., Arevalo, H. J., Edwards, A. G. & Koivumäki, J. T., 4 Sep 2018, In : Frontiers in Physiology. 9, SEP, 1221.

Research output: Contribution to journalReview ArticleScientificpeer-review

Comparative analysis of tissue reconstruction algorithms for 3D histology

Kartasalo, K., Latonen, L., Vihinen, J., Visakorpi, T., Nykter, M. & Ruusuvuori, P., 1 Sep 2018, In : Bioinformatics. 34, 17, p. 3013-3021 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms

Milagro, J., Gil, E., Lazaro, J., Seppae, V. P., Malmberg, L. P., Pelkonen, A. S., Kotaniemi-Syrjanen, A., Makela, M., Viik, J. & Bailon, R., Sep 2018, In : IEEE Journal of Biomedical and Health Informatics. 22, 5, p. 1332-1340

Research output: Contribution to journalArticleScientificpeer-review

Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer

Owen, M. C., Kulig, W., Poojari, C., Rog, T. & Strodel, B., Sep 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 9, p. 1709-1720

Research output: Contribution to journalArticleScientificpeer-review

Comparison of food frequency questionnaire data and shopping records for the assessment of food intake

Kallonen, A., Nieminen, H., Das, S. & Sallinen, R., 27 Aug 2018, Proceedings of Seventh International Conference on Well-Being in the Information Society: Fighting Inequalities (WIS 2018). p. 25-30 (TUCS Lecture Notes; vol. 28).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Production of alkanes from CO2 by engineered bacteria

Lehtinen, T., Virtanen, H., Santala, S. & Santala, V., 21 Aug 2018, In : Biotechnology for Biofuels. 11, 228.

Research output: Contribution to journalArticleScientificpeer-review

The effect of S53P4-based borosilicate glasses and glass dissolution products on the osteogenic commitment of human adipose stem cells

Ojansivu, M., Mishra, A., Vanhatupa, S., Juntunen, M., Larionova, A., Massera, J. & Miettinen, S., 1 Aug 2018, In : PLoS ONE. 13, 8, e0202740.

Research output: Contribution to journalArticleScientificpeer-review

Selenate removal in biofilm systems: Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community

Tan, L. C., Espinosa-Ortiz, E. J., Nancharaiah, Y. V., van Hullebusch, E. D., Gerlach, R. & Lens, P. N., Aug 2018, In : Journal of Chemical Technology and Biotechnology. 93, 8, p. 2380-2389

Research output: Contribution to journalArticleScientificpeer-review

Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation

Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Mangayil, R., 3 Jul 2018, In : Biotechnology for Biofuels. 11, 1, 187.

Research output: Contribution to journalArticleScientificpeer-review

Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films

Laurén, P., Paukkonen, H., Lipiäinen, T., Dong, Y., Oksanen, T., Räikkönen, H., Ehlers, H., Laaksonen, P., Yliperttula, M. & Laaksonen, T., 1 Jul 2018, In : Pharmaceutical Research. 35, 7, 145.

Research output: Contribution to journalArticleScientificpeer-review

Segmentation of vessel structures from photoacoustic images with reliability assessment

Raumonen, P. & Tarvainen, T., 1 Jul 2018, In : Biomedical Optics Express. 9, 7, p. 2887-2904 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Automatic optimization of an in silico model of human iPSC derived cardiomyocytes recapitulating calcium handling abnormalities

Paci, M., Pölönen, R-P., Cori, D., Penttinen, K., Aalto-Setälä, K., Severi, S. & Hyttinen, J., 26 Jun 2018, In : Frontiers in Physiology. 9, JUN, 709.

Research output: Contribution to journalArticleScientificpeer-review

Monitoring of heart rate and inter-beat intervals with wrist plethysmography in patients with atrial fibrillation

Harju, J., Tarniceriu, A., Parak, J., Vehkaoja, A., Yli-Hankala, A. & Korhonen, I., 26 Jun 2018, In : Physiological Measurement. 39, 6, 065007.

Research output: Contribution to journalArticleScientificpeer-review

Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins

Laulumaa, S., Nieminen, T., Raasakka, A., Krokengen, O. C., Safaryan, A., Hallin, E. I., Brysbaert, G., Lensink, M. F., Ruskamo, S., Vattulainen, I. & Kursula, P., 25 Jun 2018, In : BMC Structural Biology. 18, 1, 8.

Research output: Contribution to journalArticleScientificpeer-review

Effect of surfactant type and sonication energy on the electrical conductivity properties of nanocellulose-CNT nanocomposite films

Siljander, S., Keinänen, P., Räty, A., Ramakrishnan, K. R., Tuukkanen, S., Kunnari, V., Harlin, A., Vuorinen, J. & Kanerva, M., 20 Jun 2018, In : International Journal of Molecular Sciences. 19, 6, 1819.

Research output: Contribution to journalArticleScientificpeer-review

Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra

Pirhonen, M., Peltokangas, M. & Vehkaoja, A., 1 Jun 2018, In : Sensors. 18, 6, 1693.

Research output: Contribution to journalArticleScientificpeer-review

Altered polyamine profiles in colorectal cancer

Venäläinen, M. K., Roine, A. N., Häkkinen, M. R., Vepsäläinen, J. J., Kumpulainen, P. S., Kiviniemi, M. S., Lehtimäki, T., Oksala, N. K. & Rantanen, T. K., 1 Jun 2018, In : Anticancer Research. 38, 6, p. 3601-3607 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Enhancing the usability of low-cost eye trackers for rehabilitation applications

Gavas, R. D., Roy, S., Chatterjee, D., Tripathy, S. R., Chakravarty, K. & Sinha, A., 1 Jun 2018, In : PLoS ONE. 13, 6, e0196348.

Research output: Contribution to journalArticleScientificpeer-review

Evaluation of dry electrodes in canine heart rate monitoring

Virtanen, J., Somppi, S., Törnqvist, H., Jeyhani, V., Fiedler, P., Gizatdinova, Y., Majaranta, P., Väätäjä, H., Cardó, A. V., Lekkala, J., Tuukkanen, S., Surakka, V., Vainio, O. & Vehkaoja, A., 1 Jun 2018, In : Sensors. 18, 6, 1757.

Research output: Contribution to journalArticleScientificpeer-review

Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp

George, L., Hiltunen, A., Santala, V. & Efimov, A., 1 Jun 2018, In : Journal of Inorganic Biochemistry. 183, p. 94-100 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study

Owen, M. C., Kulig, W., Rog, T., Vattulainen, I. & Strodel, B., Jun 2018, In : Journal of Membrane Biology. 251, 3, p. 521-534 14 p.

Research output: Contribution to journalArticleScientificpeer-review

The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures

Neeli-Venkata, R., Oliveira, S. M. D., Martins, L., Startceva, S., Bahrudeen, M., Fonseca, J. M., Minoia, M. & Ribeiro, A. S., 18 May 2018, In : Physical Biology. 15, 5, 056002.

Research output: Contribution to journalArticleScientificpeer-review

Crystallization Kinetics of an Amorphous Pharmaceutical Compound Using Fluorescence-Lifetime-Imaging Microscopy

Rautaniemi, K., Vuorimaa-Laukkanen, E., Strachan, C. J. & Laaksonen, T., 7 May 2018, In : Molecular Pharmaceutics. 15, 5, p. 1964-1971 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires

Sutka, A., Timusk, M., Joost, U., Ignatans, R. & Maiorov, M., 2 May 2018, In : e-Journal of Surface Science and Nanotechnology. 16, p. 119-121 3 p.

Research output: Contribution to journalArticleScientificpeer-review

A review of connectivity map and computational approaches in pharmacogenomics

Musa, A., Ghoraie, L. S., Zhang, S. D., Glazko, G., Yli-Harja, O., Dehmer, M., Haibe-Kains, B. & Emmert-Streib, F., 1 May 2018, In : Briefings in Bioinformatics. 19, 3, p. 506-523 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Non-intersecting leaf insertion algorithm for tree structure models

Åkerblom, M., Raumonen, P., Casella, E., Disney, M. I., Danson, F. M., Gaulton, R., Schofield, L. A. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170045.

Research output: Contribution to journalArticleScientificpeer-review

Uncertainty in multispectral lidar signals caused by incidence angle effects

Kaasalainen, S., Åkerblom, M., Nevalainen, O., Hakala, T. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170033.

Research output: Contribution to journalArticleScientificpeer-review

Weighing trees with lasers: Advances, challenges and opportunities

Disney, M. I., Boni Vicari, M., Burt, A., Calders, K., Lewis, S. L., Raumonen, P. & Wilkes, P., 6 Apr 2018, In : Interface Focus. 8, 2, 20170048.

Research output: Contribution to journalArticleScientificpeer-review

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

Gao, Q., Liang, W. W., Foltz, S. M., Mutharasu, G., Jayasinghe, R. G., Cao, S., Liao, W. W., Reynolds, S. M., Wyczalkowski, M. A., Yao, L., Yu, L., Sun, S. Q., Caesar-Johnson, S. J., Demchok, J. A., Felau, I., Kasapi, M., Ferguson, M. L., Hutter, C. M., Sofia, H. J., Tarnuzzer, R., Wang, Z., Yang, L., Zenklusen, J. C., Zhang, J. J., Chudamani, S., Liu, J., Lolla, L., Naresh, R., Pihl, T., Sun, Q., Wan, Y., Wu, Y., Cho, J., DeFreitas, T., Frazer, S., Gehlenborg, N., Getz, G., Heiman, D. I., Kim, J., Lawrence, M. S., Lin, P., Meier, S., Noble, M. S., Saksena, G., Voet, D., Zhang, H., Bernard, B., Chambwe, N., Dhankani, V. & Knijnenburg, T., 3 Apr 2018, In : Cell Reports. 23, 1, p. 227-238.e3

Research output: Contribution to journalArticleScientificpeer-review

The characterization of surgical smoke from various tissues and its implications for occupational safety

Karjalainen, M., Kontunen, A., Saari, S., Rönkkö, T., Lekkala, J., Roine, A. & Oksala, N., 1 Apr 2018, In : PLoS ONE. 13, 4, e0195274.

Research output: Contribution to journalArticleScientificpeer-review

Depletion of nuclear import protein karyopherin alpha 7 (KPNA7) induces mitotic defects and deformation of nuclei in cancer cells

Vuorinen, E. M., Rajala, N. K., Ihalainen, T. O. & Kallioniemi, A., 27 Mar 2018, In : BMC Cancer. 18, 1, 325.

Research output: Contribution to journalArticleScientificpeer-review

Functional Outcome of Human Adipose Stem Cell Injections in Rat Anal Sphincter Acute Injury Model

Kuismanen, K., Juntunen, M., Narra Girish, N., Tuominen, H., Huhtala, H., Nieminen, K., Hyttinen, J. & Miettinen, S., 1 Mar 2018, In : Stem Cells Translational Medicine. 7, 3, p. 295-304 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells

Karvinen, J., Joki, T., Ylä-Outinen, L., Koivisto, J. T., Narkilahti, S. & Kellomäki, M., 1 Mar 2018, In : Reactive and Functional Polymers. 124, p. 29-39 11 p.

Research output: Contribution to journalArticleScientificpeer-review

An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band

Mehrang, S., Pietilä, J. & Korhonen, I., 22 Feb 2018, In : Sensors. 18, 2, 613.

Research output: Contribution to journalArticleScientificpeer-review

In a quest for engineering acidophiles for biomining applications: Challenges and opportunities

Gumulya, Y., Boxall, N. J., Khaleque, H. N., Santala, V., Carlson, R. P. & Kaksonen, A. H., 21 Feb 2018, In : Genes. 9, 2, 116.

Research output: Contribution to journalReview ArticleScientificpeer-review

Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases

Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 8 Feb 2018, In : Microbial Cell Factories. 17, 1, 19.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism for inhibition of twinfilin by phosphoinositides

Hakala, M., Kalimeri, M., Enkavi, G., Vattulainen, I. & Lappalainen, P., 1 Jan 2018, In : Journal of Biological Chemistry. 293, 13, p. 4818-4829 12 p.

Research output: Contribution to journalArticleScientificpeer-review

A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances

Tienaho, J., Poikulainen, E., Sarjala, T., Muilu-Mäkelä, R., Santala, V. & Karp, M., 2018, In : Photochemistry and Photobiology. 94, 6, p. 1273-1280

Research output: Contribution to journalArticleScientificpeer-review

Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms

Rinta-Kanto, J. M., Pehkonen, K., Sinkko, H., Tamminen, M. V. & Timonen, S., 2018, In : Canadian Journal of Microbiology. 64, 10, p. 716-726 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases

Ojansivu, M., Wang, X., Hyväri, L., Kellomäki, M., Hupa, L., Vanhatupa, S. & Miettinen, S., 2018, In : European Cells and Materials. 35, p. 53-71 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Differential processing in modality-specific Mauthner cell dendrites

Medan, V., Mäki-Marttunen, T., Sztarker, J. & Preuss, T., 2018, In : Journal of Physiology. 596, 4, p. 667-689

Research output: Contribution to journalArticleScientificpeer-review

Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor: Experimental and artificial neural network model analysis

Khanongnuch, R., Di Capua, F., Lakaniemi, A-M., Rene, E. R. & Lens, P. N. L., 2018, In : Process Biochemistry. 68, p. 171-181

Research output: Contribution to journalArticleScientificpeer-review

Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer

Rokade, S. S., Joshi, K. A., Mahajan, K., Patil, S., Tomar, G., Dubal, D. S., Parihar, V. S., Kitture, R., Bellare, J. R. & Ghosh, S., 2018, In : Bioinorganic Chemistry and Applications. 2018, 4924186.

Research output: Contribution to journalArticleScientificpeer-review

Knitted 3D Scaffolds of Polybutylene Succinate Support Human Mesenchymal Stem Cell Growth and Osteogenesis

Ojansivu, M., Johansson, L., Vanhatupa, S., Tamminen, I., Hannula, M., Hyttinen, J., Kellomäki, M. & Miettinen, S., 2018, In : Stem Cells International. 2018, 5928935.

Research output: Contribution to journalArticleScientificpeer-review

Mapping microscale wetting variations on biological and synthetic water-repellent surfaces

Liimatainen, V., Vuckovac, M., Jokinen, V., Sariola, V., Hokkanen, M. J., Zhou, Q. & Ras, R. H. A., 1 Dec 2017, In : Nature Communications. 8, 1, 1798.

Research output: Contribution to journalArticleScientificpeer-review

Lessons from the human genome project: Modesty, honesty, and realism

Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 23 Nov 2017, In : Frontiers in Genetics. 8, NOV, 184.

Research output: Contribution to journalComment/debateScientificpeer-review

Evaluation of optogenetic electrophysiology tools in human stem cell-derived cardiomyocytes

Björk, S., Ojala, E. A., Nordström, T., Ahola, A., Liljeström, M., Hyttinen, J., Kankuri, E. & Mervaala, E., 2 Nov 2017, In : Frontiers in Physiology. 8, NOV, 884.

Research output: Contribution to journalArticleScientificpeer-review

Azopolymer photopatterning for directional control of angiogenesis

Fedele, C., De Gregorio, M., Netti, P. A., Cavalli, S. & Attanasio, C., 1 Nov 2017, In : Acta Biomaterialia. 63, p. 317-325 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Excessive aggregation of membrane proteins in the Martini model

Javanainen, M., Martinez-Seara, H. & Vattulainen, I., 1 Nov 2017, In : PLoS ONE. 12, 11, e0187936.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different coating techniques on the properties of FucoPol films

Ferreira, A. R. V., Haapanen, J., Mäkelä, J. M., Bratvold, J. E., Nilsen, O., Tuominen, M., Alves, V. D. & Coelhoso, I. M., 1 Oct 2017, In : International Journal of Biological Macromolecules. 103, p. 268-274 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

Research output: Contribution to journalArticleScientificpeer-review

Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas

Granberg, K. J., Annala, M., Lehtinen, B., Kesseli, J., Haapasalo, J., Ruusuvuori, P., Yli-Harja, O., Visakorpi, T., Haapasalo, H., Nykter, M. & Zhang, W., 1 Sep 2017, In : Neuro-Oncology. 19, 9, p. 1206-1216 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry

Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D., 16 Aug 2017, In : ACS Chemical Neuroscience. 8, 8, p. 1767-1778 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Nanofibrillar cellulose-alginate hydrogel coated surgical sutures as cell-carrier systems

Laurén, P., Somersalo, P., Pitkänen, I., Lou, Y. R., Urtti, A., Partanen, J., Seppälä, J., Madetoja, M., Laaksonen, T., Mäkitie, A. & Yliperttula, M., 1 Aug 2017, In : PLoS ONE. 12, 8, e0183487.

Research output: Contribution to journalArticleScientificpeer-review

How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees

Juchheim, J., Annighöfer, P., Ammer, C., Calders, K., Raumonen, P. & Seidel, D., 14 Jul 2017, In : TREES-STRUCTURE AND FUNCTION. 31, 5, p. 1723–1735 13 p.

Research output: Contribution to journalArticleScientificpeer-review

sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters

Tripathi, S., Lloyd-Price, J., Ribeiro, A., Yli-Harja, O., Dehmer, M. & Emmert-Streib, F., 4 Jul 2017, In : BMC Bioinformatics. 18, 1, 325.

Research output: Contribution to journalArticleScientificpeer-review

Atomistic fingerprint of hyaluronan–CD44 binding

Vuorio, J., Vattulainen, I. & Martinez-Seara, H., 1 Jul 2017, In : PLoS Computational Biology. 13, 7, e1005663.

Research output: Contribution to journalArticleScientificpeer-review

The relationship between loading history and proximal femoral diaphysis cross-sectional geometry

Niinimäki, S., Narra, N., Härkönen, L., Abe, S., Nikander, R., Hyttinen, J., Knüsel, C. & Sievänen, H., 1 Jul 2017, In : American Journal of Human Biology. 29, 4, e22965.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics of a True Moving Bed separation process: Linear model identification and advanced process control

Nogueira, I. B. R., Ribeiro, A. M., Martins, M. A. F., Rodrigues, A. E., Koivisto, H. & Loureiro, J. M., 30 Jun 2017, In : Journal of Chromatography A. 1504

Research output: Contribution to journalArticleScientificpeer-review

Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer

Urbanucci, A., Barfeld, S. J., Kytölä, V., Itkonen, H. M., Coleman, I. M., Vodák, D., Sjöblom, L., Sheng, X., Tolonen, T., Minner, S., Burdelski, C., Kivinummi, K. K., Kohvakka, A., Kregel, S., Takhar, M., Alshalalfa, M., Davicioni, E., Erho, N., Lloyd, P., Karnes, R. J., Ross, A. E., Schaeffer, E. M., Vander Griend, D. J., Knapp, S., Corey, E., Feng, F. Y., Nelson, P. S., Saatcioglu, F., Knudsen, K. E., Tammela, T. L. J., Sauter, G., Schlomm, T., Nykter, M., Visakorpi, T. & Mills, I. G., 6 Jun 2017, In : Cell Reports. 19, 10, p. 2045-2059 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Phase partitioning of GM1 and its bodipy-labeled analog determine their different binding to Cholera Toxin

Rissanen, S., Grzybek, M., Orlowski, A., Róg, T., Cramariuc, O., Levental, I., Eggeling, C., Sezgin, E. & Vattulainen, I., 9 May 2017, In : Frontiers in Physiology. 8, MAY, 252.

Research output: Contribution to journalArticleScientificpeer-review

Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

Lehtinen, B., Raita, A., Kesseli, J., Annala, M., Nordfors, K., Yli-Harja, O., Zhang, W., Visakorpi, T., Nykter, M., Haapasalo, H. & Granberg, K. J., 3 May 2017, In : BMC Cancer. 17, 1, 310.

Research output: Contribution to journalArticleScientificpeer-review

Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation

Manna, M., Javanainen, M., Martinez-Seara Monne, H., Gabius, H-J., Rog, T. & Vattulainen, I., 1 May 2017, In : Biochimica et Biophysica Acta: Biomembranes. 1859, 5, p. 870-878 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy

Mah, P. T., Novakovic, D., Saarinen, J., van Landeghem, S., Peltonen, L., Laaksonen, T., Isomäki, A. & Strachan, C. J., May 2017, In : Pharmaceutical Research. 34, 5, p. 957-970 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering

Kahraman, M., Ozbay, A., Yuksel, H., Solmaz, R., Demir, B. & Caglayan, H., 5 Apr 2017, (Accepted/In press) In : Plasmonics. p. 1-11 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging

Higashino, T., Nakatsuji, H., Fukuda, R., Okamoto, H., Imai, H., Matsuda, T., Tochio, H., Shirakawa, M., Tkachenko, N. V., Hashida, M., Murakami, T. & Imahori, H., 24 Mar 2017, In : ChemBioChem. 18, 10, p. 951-959 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition

Bilkova, E., Pleskot, R., Rissanen, S., Sun, S., Czogalla, A., Cwiklik, L., Róg, T., Vattulainen, I., Cremer, P. S., Jungwirth, P. & Coskun, Ü., 22 Mar 2017, In : Journal of the American Chemical Society. 139, 11, p. 4019-4024 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains

Milani, R., Houbenov, N., Fernandez-Palacio, F., Cavallo, G., Luzio, A., Haataja, J., Giancane, G., Saccone, M., Priimägi, A., Metrangolo, P. & Ikkala, O., 9 Mar 2017, In : CheM. 2, 3, p. 417-426 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis

Euro, L., Haapanen, O., Róg, T., Vattulainen, I., Suomalainen, A. & Sharma, V., 7 Mar 2017, In : Biochemistry. 56, 9, p. 1227-1238 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Twin-layer biosensor for real-time monitoring of alkane metabolism

Lehtinen, T., Santala, V. & Santala, S., 1 Mar 2017, In : FEMS Microbiology Letters. 364, 6, fnx053.

Research output: Contribution to journalArticleScientificpeer-review

Membrane cholesterol access into a G-protein-coupled receptor

Guixà-González, R., Albasanz, J. L., Rodriguez-Espigares, I., Pastor, M., Sanz, F., Martí-Solano, M., Manna, M., Martinez-Seara, H., Hildebrand, P. W., Martín, M. & Selent, J., 21 Feb 2017, In : Nature Communications. 8, 14505.

Research output: Contribution to journalArticleScientificpeer-review

Magnetic routing of light-induced waveguides

Izdebskaya, Y., Shvedov, V., Assanto, G. & Krolikowski, W., 15 Feb 2017, In : Nature Communications. 8, 14452.

Research output: Contribution to journalArticleScientificpeer-review

The use of mathematical modeling for the development of a low cost fuzzy gain schedule neutralization control system

Sislian, R., da Silva, F. V., Gedraite, R., Jokinen, H. & Rajan, D. K., 4 Feb 2017, Transactions on Engineering Technologies: World Congress on Engineering and Computer Science 2015. Springer Singapore, p. 525-539 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Multivariate statistical analysis for the identification of potential seafood spoilage indicators

Kuuliala, L., Abatih, E., Ioannidis, A. G., Vanderroost, M., De Meulenaer, B., Ragaert, P. & Devlieghere, F., 1 Feb 2017, In : Food Control. 84, p. 49-60 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells

Balanta, M. A. G., Orsi Gordo, V., Carvalho, A. R. H., Puustinen, J., Alghamdi, H. M., Henini, M., Galeti, H. V. A., Guina, M. & Galvão Gobato, Y., Feb 2017, In : Journal of Luminescence. 182, p. 49-52 4 p.

Research output: Contribution to journalArticleScientificpeer-review

GSAR: Bioconductor package for Gene Set analysis in R

Rahmatallah, Y., Zybailov, B., Emmert-Streib, F. & Glazko, G., 24 Jan 2017, In : BMC Bioinformatics. 18, 1, 61.

Research output: Contribution to journalArticleScientificpeer-review

Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro

Hyysalo, A., Ristola, M., Joki, T., Honkanen, M., Vippola, M. & Narkilahti, S., 2017, In : MACROMOLECULAR BIOSCIENCE. 17, 7, 1600517.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle

Grabon, A., Orłowski, A., Tripathi, A., Vuorio, J., Javanainen, M., Róg, T., Lönnfors, M., McDermott, M. I., Siebert, G., Somerharju, P., Vattulainen, I. & Bankaitis, V. A., 2017, In : Journal of Biological Chemistry. 292, 35, p. 14438-14455 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Electrical Contacts in SOI MEMS Using Aerosol Jet Printing

Khorramdel, B., Torkkeli, A. & Mäntysalo, M., 2017, In : IEEE Journal of the Electron Devices Society. 6, p. 34-40

Research output: Contribution to journalArticleScientificpeer-review

Extracting the strongest signals from omics data: Differentially expressed pathways and beyond

Glazko, G., Rahmatallah, Y., Zybailov, B. & Emmert-Streib, F., 2017, Methods in Molecular Biology. HUMANA PRESS INC, p. 125-159 35 p. (Methods in Molecular Biology; vol. 1613).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Metastasis detection from whole slide images using local features and random forests

Valkonen, M., Kartasalo, K., Liimatainen, K., Nykter, M., Latonen, L. & Ruusuvuori, P., 2017, In : Cytometry Part A. 91, 6, p. 555-565

Research output: Contribution to journalArticleScientificpeer-review

Oxysterols Versus Cholesterol in Model Neuronal Membrane. I. The Case of 7-Ketocholesterol. The Langmuir Monolayer Study

Wnętrzak, A., Makyła-Juzak, K., Filiczkowska, A., Kulig, W. & Dynarowicz-Łątka, P., 2017, In : Journal of Membrane Biology. 250, 5, p. 553–564

Research output: Contribution to journalArticleScientificpeer-review

Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex

Lahbib, I., Valkonen, A., Rzaigui, M. & Smirani, W., 2017, In : Journal of Cluster Science. 28, 4, p. 2239–2252 14 p.

Research output: Contribution to journalArticleScientificpeer-review

The Association Between Liver and Tumor [18F]FDG Uptake in Patients with Diffuse Large B Cell Lymphoma During Chemotherapy

Wu, X., Bhattarai, A., Korkola, P., Pertovaara, H., Eskola, H. & Kellokumpu-Lehtinen, P. L., 2017, In : Molecular Imaging and Biology. 19, 5, p. 787–794 8 p.

Research output: Contribution to journalArticleScientificpeer-review

The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations

Kalli, A. C., Rog, T., Vattulainen, I., Campbell, I. D. & Sansom, M. S. P., 2017, In : Journal of Membrane Biology. 250, p. 337-351 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Transcription Initiation Controls Skewness of the Distribution of Intervals Between RNA Productions

Kandavalli, V., Startceva, S. & Sanches Ribeiro, A., 2017, 31st European Simulation and Modelling Conference: ESM'2017. Paulo J.S, G. (ed.). Portugal: EUROSIS, p. 397-403

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Abstract: Direction as a vibration loading parameter in bone tissue engineering

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 25 Nov 2016.

Research output: Other conference contributionPaper, poster or abstractScientific

SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., Dehmer, M. & Emmert-Streib, F., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3345-3347 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Increased survival rate by local release of diclofenac in a murine model of recurrent oral carcinoma

Will, O. M., Purcz, N., Chalaris, A., Heneweer, C., Boretius, S., Purcz, L., Nikkola, L., Ashammakhi, N., Kalthoff, H., Glüer, C. C., Wiltfang, J., Açil, Y. & Tiwari, S., 12 Oct 2016, In : International Journal of Nanomedicine. 11, p. 5311-5321 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of σ factor competition are promoter initiation kinetics dependent

Kandavalli, V. K., Tran, H. & Ribeiro, A. S., 1 Oct 2016, In : Biochimica et Biophysica Acta: Gene Regulatory Mechanisms. 1859, 10, p. 1281-1288 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1

Kuleta, P., Sarewicz, M., Postila, P., Róg, T. & Osyczka, A., 1 Oct 2016, In : Biochimica et Biophysica Acta: Bioenergetics. 1857, 10, p. 1661-1668 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Lipid membranes: Theory and simulations bridged to experiments

Vattulainen, I. & Róg, T., 1 Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2251-2253 3 p.

Research output: Contribution to journalEditorialScientificpeer-review

Efficient preparation and analysis of membrane and membrane protein systems

Javanainen, M. & Martinez-Seara, H., Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2468-2482

Research output: Contribution to journalArticleScientificpeer-review

Functionalized lipids and surfactants for specific applications

Kepczynski, M. & Róg, T., Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2362-2379

Research output: Contribution to journalArticleScientificpeer-review

Controlling the motion of multiple objects on a Chladni plate

Zhou, Q., Sariola, V., Latifi, K. & Liimatainen, V., 9 Sep 2016, In : Nature Communications. 7, 12764.

Research output: Contribution to journalArticleScientificpeer-review

Current densities and total contact currents during forest clearing tasks under 400kV power lines

Korpinen, L., Kuisti, H. & Elovaara, J., 1 Sep 2016, In : Bioelectromagnetics. 37, 6, p. 423-428

Research output: Contribution to journalArticleScientificpeer-review

Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria

Kaurola, P., Sharma, V., Vonk, A., Vattulainen, I. & Róg, T., 1 Sep 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 9, p. 2116-2122 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Selenium: environmental significance, pollution, and biological treatment technologies

Tan, L. C., Nancharaiah, Y. V., van Hullebusch, E. D. & Lens, P. N. L., 1 Sep 2016, In : Biotechnology Advances. 34, 5, p. 886-907 22 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Against dataism and for data sharing of big biomedical and clinical data with research parasites

Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 31 Aug 2016, In : Frontiers in Genetics. 7, AUG, 154.

Research output: Contribution to journalComment/debateScientificpeer-review

The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase

Sharma, V. & Wikström, M., Aug 2016, In : Biochimica et Biophysica Acta: Bioenergetics. 1857, 8, p. 1111-1115

Research output: Contribution to journalArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 10 Jul 2016. 1 p.

Research output: Other conference contributionPaper, poster or abstractScientific

Bioluminescence-based system for rapid detection of natural transformation

Santala, V., Karp, M. & Santala, S., 1 Jul 2016, In : FEMS Microbiology Letters. 363, 13, fnw125.

Research output: Contribution to journalArticleScientificpeer-review

Effect of particle size and dispersion status on cytotoxicity and genotoxicity of zinc oxide in human bronchial epithelial cells

Roszak, J., Catalán, J., Järventaus, H., Lindberg, H. K., Suhonen, S., Vippola, M., Stepnik, M. & Norppa, H., 1 Jul 2016, In : Mutation Research: Genetic Toxicology and Environmental Mutagenesis. 805, p. 7-18 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Indocyanine Green-Loaded Liposomes for Light-Triggered Drug Release

Lajunen, T., Kontturi, L-S., Viitala, L., Manna, M., Cramariuc, O., Róg, T., Bunker, A., Laaksonen, T., Viitala, T., Murtomäki, L. & Urtti, A., 6 Jun 2016, In : Molecular Pharmaceutics. 13, 6, p. 2095-2107 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Robust statistical approaches for RSS-based floor detection in indoor localization

Razavi, A., Valkama, M. & Lohan, E. S., 1 Jun 2016, In : Sensors. 16, 6, 793.

Research output: Contribution to journalArticleScientificpeer-review

Characterizing rate limiting steps in transcription from RNA production times in live cells

Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

Research output: Contribution to journalArticleScientificpeer-review

The need for formally defining "modern medicine" by means of experimental design

Emmert-Streib, F., Tuomisto, L. & Yli-Harja, O., 20 Apr 2016, In : Frontiers in Genetics. 7, APR, 60.

Research output: Contribution to journalArticleScientificpeer-review

Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering

Vuornos, K., Björninen, M., Talvitie, E., Paakinaho, K., Kellomäki, M., Huhtala, H., Miettinen, S., Seppänen-Kaijansinkko, R. & Haimi, S., 1 Mar 2016, In : Tissue Engineering Part A. 22, 5-6, p. 513-523 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Texture descriptors ensembles enable image-based classification of maturation of human stem cell-derived retinal pigmented epithelium

Nanni, L., Paci, M., Dos Santos, F. L. C., Skottman, H., Juuti-Uusitalo, K. & Hyttinen, J., 1 Feb 2016, In : PLoS ONE. 11, 2, e0149399.

Research output: Contribution to journalArticleScientificpeer-review

Cell-based bioreporter assay coupled to HPLC micro-fractionation in the evaluation of antimicrobial properties of the basidiomycete fungus Pycnoporus cinnabarinus

Järvinen, P., Nybond, S., Marcourt, L., Ferreira Queiroz, E., Wolfender, J. L., Mettälä, A., Karp, M., Vuorela, H., Vuorela, P., Hatakka, A. & Tammela, P., 21 Jan 2016, In : Pharmaceutical Biology. 54, 6, p. 1-8 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Biological and Bioelectrochemical Recovery of Critical and Scarce Metals

Nancharaiah, Y. V., Mohan, S. V. & Lens, P. N. L., 2016, In : Trends in Biotechnology. 34, 2, p. 137-155 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol oxidation products and their biological importance

Kulig, W., Cwiklik, L., Jurkiewicz, P., Rog, T. & Vattulainen, I., 2016, In : Chemistry and Physics of Lipids. 199, p. 144-160 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating

Lahti, J., Lavonen, J., Lahtinen, K., Johansson, P., Seppänen, T. & Cameron, D. C., 2016, TAPPI International Conference on Nanotechnology for Renewable Materials 2016. TAPPI Press, Vol. 2. p. 684-706 23 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

Teppola, H., Sarkanen, J. R., Jalonen, T. O. & Linne, M-L., 2016, In : Neurochemical Research. 41, 4, p. 731-747

Research output: Contribution to journalArticleScientificpeer-review

Non-Brownian diffusion in lipid membranes: Experiments and simulations

Metzler, R., Jeon, J. H. & Cherstvy, A. G., 2016, In : Biochimica et Biophysica Acta: Biomembranes. 215, p. 173–185

Research output: Contribution to journalReview ArticleScientificpeer-review

Robustness of the process of nucleoid exclusion of protein aggregates in Escherichia coli

Neeli-Venkata, R., Martikainen, A., Gupta, A., Goncalves, N., Fonseca, J. & Ribeiro, A. S., 2016, In : Journal of Bacteriology. 198, 6, p. 898-906 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Role of charged lipids in membrane structures: Insight given by simulations

Pöyry, S. & Vattulainen, I., 2016, In : Biochimica et Biophysica Acta: Biomembranes. p. 2322–2333 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality

Saarinen, J. J., Valtakari, D., Bollström, R., Stepien, M., Haapanen, J., Mäkelä, J. M. & Toivakka, M., 2016, Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. TechConnect, Vol. 4. p. 47-50 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations

Rog, T. & Koivuniemi, A., 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 1, p. 97-103 7 p.

Research output: Contribution to journalArticleScientificpeer-review

The Effects of Pharmacological Compounds on Beat Rate Variations in Human Long QT-Syndrome Cardiomyocytes

Kuusela, J., Kim, J., Räsänen, E. & Aalto-Setälä, K., 2016, In : Stem Cell Reviews and Reports. 12, 6, p. 698–707 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Urinary thrombomodulin levels were significantly higher following occupational exposure to chemicals, in the presence of dipstick protein, but not in the presence of dipstick blood

Ruddock, M. W., De Matos Simoes, R., O'Rourke, D., Duggan, B., Stevenson, M., O'Kane, H. F., Curry, D., Abogunrin, F., Emmert-Streib, F., Reid, C. N., Maxwell, P., Arthur, K., Mallon, M., Carson, G., Kennedy, G. & Williamson, K. E., 2016, In : Biology and Medicine. 8, 1, 1000260.

Research output: Contribution to journalArticleScientificpeer-review

Validity of parameters in static linear testing of flexor tendon repair

Linnanmäki, L., Göransson, H., Havulinna, J., Sippola, P., Karjalainen, T. & Leppänen, O. V., 2016, In : Journal of Biomechanics. 49, 13, p. 2785–2790

Research output: Contribution to journalArticleScientificpeer-review

A Comparative View on Easy to Deploy non-Integrating Methods for Patient-Specific iPSC Production

Manzini, S., Viiri, L. E., Marttila, S. & Aalto-Setälä, K., 1 Dec 2015, In : Stem Cell Reviews and Reports. 11, 6, p. 900-908 9 p.

Research output: Contribution to journalArticleScientificpeer-review

A new algorithm to improve assessment of cortical bone geometry in pQCT

Cervinka, T., Sievänen, H., Lala, D., Cheung, A. M., Giangregorio, L. & Hyttinen, J., 1 Dec 2015, In : Bone. 81, p. 721-730 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells

Vanhatupa, S., Ojansivu, M., Autio, R., Juntunen, M. & Miettinen, S., 1 Dec 2015, In : Stem Cells Translational Medicine. 4, 12, p. 1391-1402 12 p.

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition: Medical exposures, including hormone therapy, and cancer

Friis, S., Kesminiene, A., Espina, C., Auvinen, A., Straif, K. & Schüz, J., 1 Dec 2015, In : CANCER EPIDEMIOLOGY. 39, p. S107-S119

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition: Ionising and non-ionising radiation and cancer

McColl, N., Auvinen, A., Kesminiene, A., Espina, C., Erdmann, F., de Vries, E., Greinert, R., Harrison, J. & Schüz, J., 1 Dec 2015, In : CANCER EPIDEMIOLOGY. 39, p. S93-S100

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition: Ultraviolet radiation and cancer

Greinert, R., de Vries, E., Erdmann, F., Espina, C., Auvinen, A., Kesminiene, A. & Schüz, J., 1 Dec 2015, In : CANCER EPIDEMIOLOGY. 39, p. S75-S83

Research output: Contribution to journalArticleScientificpeer-review

Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts

Jia, L., Sun, Z., Wu, X., Misteli, T. & Sharma, V., 1 Dec 2015, In : Genomics Data. 6, p. 277-279 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Improving the Immunogenicity of the Mycobacterium bovis BCG Vaccine by Non-Genetic Bacterial Surface Decoration Using the Avidin-Biotin System

Liao, T. Y. A., Lau, A., Joseph, S., Hytönen, V. & Hmama, Z., 1 Dec 2015, In : PLoS ONE. 10, 12, e0145833.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates

Kannisto, M. S., Mangayil, R. K., Shrivastava-Bhattacharya, A., Pletschke, B. I., Karp, M. T. & Santala, V. P., 1 Dec 2015, In : Biotechnology for Biofuels. 8, 1, 198.

Research output: Contribution to journalArticleScientificpeer-review

Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles

Ravi, A., Luthra, A., Teixeira, F. L., Berger, P. R. & Coe, J. V., 1 Dec 2015, In : Plasmonics. 10, 6, p. 1505-1512 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater

Marjakangas, J. M., Chen, C. Y., Lakaniemi, A. M., Puhakka, J. A., Whang, L. M. & Chang, J. S., 5 Nov 2015, In : Biochemical Engineering Journal. 103, p. 177-184 8 p.

Research output: Contribution to journalArticleScientificpeer-review

The Molecular Taxonomy of Primary Prostate Cancer

Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., Annala, M., Aprikian, A., Armenia, J., Arora, A., Auman, J. T., Balasundaram, M., Balu, S., Barbieri, C. E., Bauer, T., Benz, C. C., Bergeron, A., Beroukhim, R., Berrios, M., Bivol, A., Bodenheimer, T., Boice, L., Bootwalla, M. S., Borges Dos Reis, R., Boutros, P. C., Bowen, J., Bowlby, R., Boyd, J., Bradley, R. K., Breggia, A., Brimo, F., Bristow, C. A., Brooks, D., Broom, B. M., Bryce, A. H., Bubley, G., Burks, E., Butterfield, Y. S. N., Button, M., Canes, D., Carlotti, C. G., Carlsen, R., Carmel, M., Carroll, P. R., Carter, S. L., Cartun, R., Carver, B. S., Chan, J. M., Chang, M. T., Chen, Y., Cherniack, A. D., Chevalier, S., Chin, L., Cho, J., Chu, A., Chuah, E., Chudamani, S., Cibulskis, K., Ciriello, G., Clarke, A., Cooperberg, M. R., Corcoran, N. M., Costello, A. J., Cowan, J., Crain, D., Curley, E., David, K., Demchok, J. A., Demichelis, F., Dhalla, N., Dhir, R., Doueik, A., Drake, B., Dvinge, H., Dyakova, N., Felau, I., Ferguson, M. L., Frazer, S., Freedland, S., Fu, Y., Gabriel, S. B., Gao, J., Gardner, J., Gastier-Foster, J. M., Gehlenborg, N., Gerken, M., Gerstein, M. B., Getz, G., Godwin, A. K., Gopalan, A., Graefen, M., Graim, K., Gribbin, T., Guin, R., Gupta, M., Hadjipanayis, A., Haider, S., Hamel, L., Hayes, D. N., Heiman, D. I., Hess, J., Hoadley, K. A., Holbrook, A. H., Holt, R. A., Holway, A., Hovens, C. M., Hoyle, A. P., Huang, M., Hutter, C. M., Ittmann, M., Iype, L., Jefferys, S. R., Jones, C. D., Jones, S. J. M., Juhl, H., Kahles, A., Kane, C. J., Kasaian, K., Kerger, M., Khurana, E., Kim, J., Klein, R. J., Kucherlapati, R., Lacombe, L., Ladanyi, M., Lai, P. H., Laird, P. W., Lander, E. S., Latour, M., Lawrence, M. S., Lau, K., Lebien, T., Lee, D., Lee, S., Lehmann, K. V., Leraas, K. M., Leshchiner, I., Leung, R., Libertino, J. A., Lichtenberg, T. M., Lin, P., Linehan, W. M., Ling, S., Lippman, S. M., Liu, J., Liu, W., Lochovsky, L., Loda, M., Logothetis, C., Lolla, L., Longacre, T., Lu, Y., Luo, J., Ma, Y., Mahadeshwar, H. S., Mallery, D., Mariamidze, A., Marra, M. A., Mayo, M., McCall, S., McKercher, G., Meng, S., Mes-Masson, A. M., Merino, M. J., Meyerson, M., Mieczkowski, P. A., Mills, G. B., Shaw, K. R. M., Minner, S., Moinzadeh, A., Moore, R. A., Morris, S., Morrison, C., Mose, L. E., Mungall, A. J., Murray, B. A., Myers, J. B., Naresh, R., Nelson, J., Nelson, M. A., Nelson, P. S., Newton, Y., Noble, M. S., Noushmehr, H., Nykter, M., Pantazi, A., Parfenov, M., Park, P. J., Parker, J. S., Paulauskis, J., Penny, R., Perou, C. M., Piché, A., Pihl, T., Pinto, P. A., Prandi, D., Protopopov, A., Ramirez, N. C., Rao, A., Rathmell, W. K., Rätsch, G., Ren, X., Reuter, V. E., Reynolds, S. M., Rhie, S. K., Rieger-Christ, K., Roach, J., Robertson, A. G., Robinson, B., Rubin, M. A., Saad, F., Sadeghi, S., Saksena, G., Saller, C., Salner, A., Sanchez-Vega, F., Sander, C., Sandusky, G., Sauter, G., Sboner, A., Scardino, P. T., Scarlata, E., Schein, J. E., Schlomm, T., Schmidt, L. S., Schultz, N., Schumacher, S. E., Seidman, J., Neder, L., Seth, S., Sharp, A., Shelton, C., Shelton, T., Shen, H., Shen, R., Sherman, M., Sheth, M., Shi, Y., Shih, J., Shmulevich, I., Simko, J., Simon, R., Simons, J. V., Sipahimalani, P., Skelly, T., Sofia, H. J., Soloway, M. G., Song, X., Sorcini, A., Sougnez, C., Stepa, S., Stewart, C., Stewart, J., Stuart, J. M., Sullivan, T. B., Sun, C., Sun, H., Tam, A., Tan, D., Tang, J., Tarnuzzer, R., Tarvin, K., Taylor, B. S., Teebagy, P., Tenggara, I., Têtu, B., Tewari, A., Thiessen, N., Thompson, T., Thorne, L. B., Tirapelli, D. P., Tomlins, S. A., Trevisan, F. A., Troncoso, P., True, L. D., Tsourlakis, M. C., Tyekucheva, S., Van Allen, E., Van Den Berg, D. J., Veluvolu, U., Verhaak, R., Vocke, C. D., Voet, D., Wan, Y., Wang, Q., Wang, W., Wang, Z., Weinhold, N., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wise, L., Witte, J., Wu, C. C., Wu, J., Wu, Y., Xu, A. W., Yadav, S. S., Yang, L., Yang, L., Yau, C., Ye, H., Yena, P., Zeng, T., Zenklusen, J. C., Zhang, H., Zhang, J., Zhang, J., Zhang, W., Zhong, Y., Zhu, K. & Zmuda, E., 5 Nov 2015, In : Cell. 163, 4, p. 1011-1025 15 p.

Research output: Contribution to journalArticleScientificpeer-review

A BRCA1-interacting lncRNA regulates homologous recombination

Sharma, V., Khurana, S., Kubben, N., Abdelmohsen, K., Oberdoerffer, P., Gorospe, M. & Misteli, T., 1 Nov 2015, In : EMBO REPORTS. 16, 11, p. 1520-1534 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery

Zorzi, G. K., Párraga, J. E., Seijo, B. & Sanchez, A., 1 Nov 2015, In : Colloids and Surfaces B: Biointerfaces. 135, p. 533-541 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Submolecular Plasticization Induced by Photons in Azobenzene Materials

Vapaavuori, J., Laventure, A., Bazuin, C. G., Lebel, O. & Pellerin, C., 28 Oct 2015, In : Journal of the American Chemical Society. 137, 42, p. 13510-13517 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism

Ryödi, E., Metso, S., Jaatinen, P., Huhtala, H., Saaristo, R., Välimäki, M. & Auvinen, A., 1 Oct 2015, In : Journal of Clinical Endocrinology and Metabolism. 100, 10, p. 3710-3717 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of single and fractionated irradiation on natural killer cell populations: Radiobiological characteristics of viability and cytotoxicity in vitro

Hietanen, T., Pitkänen, M., Kapanen, M. & Kellokumpu-Lehtinen, P. L., 1 Oct 2015, In : Anticancer Research. 35, 10, p. 5193-5200 8 p.

Research output: Contribution to journalArticleScientificpeer-review

ESD qualification data used as the basis for building electrostatic discharge protected areas

Tamminen, P., Viheriäkoski, T., Sydänheimo, L. & Ukkonen, L., 1 Oct 2015, In : Journal of Electrostatics. 77, p. 174-181 8 p., 3024.

Research output: Contribution to journalArticleScientificpeer-review

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans

Al Olama, A. A., Dadaev, T., Hazelett, D. J., Li, Q., Leongamornlert, D., Saunders, E. J., Stephens, S., Cieza-Borrella, C., Whitmore, I., Garcia, S. B., Giles, G. G., Southey, M. C., Fitzgerald, L., Gronberg, H., Wiklund, F., Aly, M., Henderson, B. E., Schumacher, F., Haiman, C. A., Schleutker, J., Wahlfors, T., Tammela, T. L., Nordestgaard, B. G., Key, T. J., Travis, R. C., Neal, D. E., Donovan, J. L., Hamdy, F. C., Pharoah, P., Pashayan, N., Khaw, K. T., Stanford, J. L., Thibodeau, S. N., Mcdonnell, S. K., Schaid, D. J., Maier, C., Vogel, W., Luedeke, M., Herkommer, K., Kibel, A. S., Cybulski, C., Wokolorczyk, D., Kluzniak, W., Cannon-Albright, L., Brenner, H., Butterbach, K., Arndt, V., Park, J. Y., Sellers, T., Lin, H. Y., Slavov, C., Kaneva, R., Mitev, V., Batra, J., Clements, J. A., Spurdle, A., Teixeira, M. R., Paulo, P., Maia, S., Pandha, H., Michael, A., Kierzek, A., Govindasami, K., Guy, M., Lophatonanon, A., Muir, K., Viñuela, A., Brown, A. A., Freedman, M., Conti, D. V., Easton, D., Coetzee, G. A., Eeles, R. A. & Kote-Jarai, Z., 1 Oct 2015, In : HUMAN MOLECULAR GENETICS. 24, 19, p. 5589-5602 14 p., ddv203.

Research output: Contribution to journalArticleScientificpeer-review

Transcriptome sequencing reveals PCAT5 as a Novel ERG-Regulated long Noncoding RNA in prostate cancer

Ylipää, A., Kivinummi, K., Kohvakka, A., Annala, M., Latonen, L., Scaravilli, M., Kartasalo, K., Leppänen, S. P., Karakurt, S., Seppäla, J., Yli-Harja, O., Tammela, T. L. J., Zhang, W., Visakorpi, T. & Nykter, M., 1 Oct 2015, In : Cancer Research. 75, 19, p. 4026-4031 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate: Phosphate antiporter

Moradi, M., Enkavi, G. & Tajkhorshid, E., 29 Sep 2015, In : Nature Communications. 6, 8393.

Research output: Contribution to journalArticleScientificpeer-review

Reducing overdiagnosis by polygenic risk-stratified screening: Findings from the Finnish section of the ERSPC

Pashayan, N., Pharoah, P. D. P., Schleutker, J., Talala, K., Tammela, T. L. J., Määttänen, L., Harrington, P., Tyrer, J., Eeles, R., Duffy, S. W. & Auvinen, A., 29 Sep 2015, In : British Journal of Cancer. 113, 7, p. 1086-1093 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Intraprostatic inflammation is positively associated with serum PSA in men with PSA <4 ngml-1, normal DRE and negative for prostate cancer

Umbehr, M. H., Gurel, B., Murtola, T. J., Sutcliffe, S., Peskoe, S. B., Tangen, C. M., Goodman, P. J., Thompson, I. M., Lippman, S. M., Lucia, M. S., Parnes, H. L., Drake, C. G., Nelson, W. G., De Marzo, A. M. & Platz, E. A., 14 Sep 2015, In : PROSTATE CANCER AND PROSTATIC DISEASES. 18, 3, p. 264-269 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions

Kokko, M. E., Mäkinen, A. E., Sulonen, M. L. K. & Puhakka, J. A., 5 Sep 2015, In : Biochemical Engineering Journal. 101, p. 248-252 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Is Daylight-PDT a good treatment option during solar eclipse?

Vicentini, C., Tylcz, J. B., Betrouni, N., Mortier, L. & Mordon, S., 1 Sep 2015, In : PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 12, 3, p. 376-377 2 p.

Research output: Contribution to journalLetterScientificpeer-review

Sotalol, but not digoxin is associated with decreased prostate cancer risk: A population-based case-control study

Kaapu, K. J., Ahti, J., Tammela, T. L. J., Auvinen, A. & Murtola, T. J., 1 Sep 2015, In : International Journal of Cancer. 137, 5, p. 1187-1195 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells

Sorkio, A., Porter, P. J., Juuti-Uusitalo, K., Meenan, B. J., Skottman, H. & Burke, G. A., 1 Sep 2015, In : Tissue Engineering Part A. 21, 17-18, p. 2301-2314 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel analysis software for detecting and classifying Ca2+ transient abnormalities in stem cell-derived cardiomyocytes

Penttinen, K., Siirtola, H., Àvalos-Salguero, J., Vainio, T., Juhola, M. & Aalto-Setälä, K., 26 Aug 2015, In : PLoS ONE. 10, 8, e0135806.

Research output: Contribution to journalArticleScientificpeer-review

Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data

Rane, J. K., Ylipää, A., Adamson, R., Mann, V. M., Simms, M. S., Collins, A. T., Visakorpi, T., Nykter, M. & Maitland, N. J., 11 Aug 2015, In : British Journal of Cancer. 113, 4, p. 611-615 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Human breast cancer cells educate macrophages toward the M2 activation status

Sousa, S., Brion, R., Lintunen, M., Kronqvist, P., Sandholm, J., Mönkkönen, J., Kellokumpu-Lehtinen, P. L., Lauttia, S., Tynninen, O., Joensuu, H., Heymann, D. & Määttä, J. A., 5 Aug 2015, In : BREAST CANCER RESEARCH. 17, 1, 101.

Research output: Contribution to journalArticleScientificpeer-review

His-tagged norovirus-like particles: A versatile platform for cellular delivery and surface display

Koho, T., Ihalainen, T. O., Stark, M., Uusi-Kerttula, H., Wieneke, R., Rahikainen, R., Blazevic, V., Marjomäki, V., Tampé, R., Kulomaa, M. S. & Hytönen, V. P., 21 Jul 2015, In : European Journal of Pharmaceutics and Biopharmaceutics. 96, p. 22-31 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of the cellular intake of a gene expression inducer at high concentrations

Tran, H., Oliveira, S. M. D. D., Goncalves, N. & Ribeiro, A. S., 20 Jul 2015, In : Molecular Biosystems. 11, 9, p. 2579-2587 9 p.

Research output: Contribution to journalArticleScientificpeer-review

In-vivo deformation measurements of the human heart by 3D Digital Image Correlation

Hokka, M., Mirow, N., Nagel, H., Irqsusi, M., Vogt, S. & Kuokkala, V. T., 16 Jul 2015, In : Journal of Biomechanics. 48, 10, p. 2217-2220 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells

Ojansivu, M., Vanhatupa, S., Björkvik, L., Häkkänen, H., Kellomäki, M., Autio, R., Ihalainen, J. A., Hupa, L. & Miettinen, S., 15 Jul 2015, In : Acta Biomaterialia. 21, p. 190-203 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Biogenesis of Nascent High Density Lipoprotein Particles

Koivuniemi, A. & Vattulainen, I., 9 Jul 2015, In : Structure. 23, 7, p. 1153-1154 2 p., 3212.

Research output: Contribution to journalArticleScientificpeer-review

Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent

Marjakangas, J. M., Lakaniemi, A. M., Koskinen, P. E. P., Chang, J. S. & Puhakka, J. A., 5 Jul 2015, In : Biochemical Engineering Journal. 99, p. 48-54 7 p.

Research output: Contribution to journalArticleScientificpeer-review

μCT based assessment of mechanical deformation of designed PTMC scaffolds

Narra, N., Blanquer, S. B. G., Haimi, S. P., Grijpma, D. W. & Hyttinen, J., 2 Jul 2015, In : Clinical Hemorheology and Microcirculation. 60, 1, p. 99-108 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A robust AMMI model for the analysis of genotype-by-environment data

Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts

Nybond, S., Karp, M., Yrjönen, T. & Tammela, P., 1 Jul 2015, In : Journal of Microbiological Methods. 114, p. 54-56 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol under oxidative stress: How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols

Kulig, W., Olzyńska, A., Jurkiewicz, P., Kantola, A. M., Komulainen, S., Manna, M., Pourmousa, M., Vazdar, M., Cwiklik, L., Rog, T., Khelashvili, G., Harries, D., Telkki, V. V., Hof, M., Vattulainen, I. & Jungwirth, P., 1 Jul 2015, In : Free Radical Biology and Medicine. 84, p. 30-41 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Effects of remedies made in patient setup process on residual setup errors and margins in head and neck cancer radiotherapy based on 2D image guidance

Kapanen, M., Laaksomaa, M., Tulijoki, T., Kellokumpu-Lehtinen, P. L. & Hyödynmaa, S., 1 Jul 2015, In : Reports of Practical Oncology and Radiotherapy. 20, 4, p. 292-298 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid

Oliveira, S. M. D., Chandraseelan, J. G., Häkkinen, A., Goncalves, N. S. M., Yli-Harja, O., Startceva, S. & S. Ribeiro, A., 1 Jul 2015, In : Molecular Biosystems. 11, 7, p. 1939-1945 7 p.

Research output: Contribution to journalArticleScientificpeer-review

The influence of SrO and CaO in silicate and phosphate bioactive glasses on human gingival fibroblasts

Massera, J., Kokkari, A., Närhi, T. & Hupa, L., 25 Jun 2015, In : Journal of Materials Science: Materials in Medicine. 26, 6, 196.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics of the peripheral membrane protein P2 from human myelin measured by neutron scattering: A Comparison between wild-type protein and a hinge mutant

Laulumaa, S., Nieminen, T., Lehtimäki, M., Aggarwal, S., Simons, M., Koza, M. M., Vattulainen, I., Kursula, P. & Natali, F., 11 Jun 2015, In : PLoS ONE. 10, 6, e128954.

Research output: Contribution to journalArticleScientificpeer-review

A genome-wide expression quantitative trait loci analysis of proprotein convertase subtilisin/kexin enzymes identifies a novel regulatory gene variant for FURIN expression and blood pressure

Turpeinen, H., Seppälä, I., Lyytikäinen, L. P., Raitoharju, E., Hutri-Kähönen, N., Levula, M., Oksala, N., Waldenberger, M., Klopp, N., Illig, T., Mononen, N., Laaksonen, R., Raitakari, O., Kähönen, M., Lehtimäki, T. & Pesu, M., 1 Jun 2015, In : HUMAN GENETICS. 134, 6, p. 627-636 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation

Nguyen, S. D., Javanainen, M., Rissanen, S., Zhao, H., Huusko, J., Kivelä, A. M., Ylä-Herttuala, S., Navab, M., Fogelman, A. M., Vattulainen, I., Kovanen, P. T. & Öörni, K., 1 Jun 2015, In : Journal of Lipid Research. 56, 6, p. 1206-1221 16 p.

Research output: Contribution to journalArticleScientificpeer-review

MIR-25 modulates invasivenessand dissemination of human prostate cancer cells via regulation of αv-and α6-integrin expression

Zoni, E., Van Der Horst, G., Van De Merbel, A. F., Chen, L., Rane, J. K., Pelger, R. C. M., Collins, A. T., Visakorpi, T., Snaar-Jagalska, B. E., Maitland, N. J. & Van Der Pluijm, G., 1 Jun 2015, In : Cancer Research. 75, 11, p. 2326-2336 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Structural analysis of treatment cycles representing transitions between nursing organizational units inferred from diabetes

Dehmer, M., Kurt, Z., Emmert-Streib, F., Them, C., Schulc, E. & Hofer, S., 1 Jun 2015, In : PLoS ONE. 10, 6, e0127152.

Research output: Contribution to journalArticleScientificpeer-review

Using shRNA experiments to validate gene regulatory networks

Olsen, C., Fleming, K., Prendergast, N., Rubio, R., Emmert-Streib, F., Bontempi, G., Quackenbush, J. & Haibe-Kains, B., 1 Jun 2015, In : Genomics Data. 4, p. 123-126 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Survival benefit of early androgen receptor inhibitor therapy in locally advanced prostate cancer: Long-term follow-up of the SPCG-6 study

Thomsen, F. B., Brasso, K., Christensen, I. J., Johansson, J. E., Angelsen, A., Tammela, T. L. J. & Iversen, P., 30 May 2015, In : EUROPEAN JOURNAL OF CANCER. 51, 10, p. 1283-1292 10 p.

Research output: Contribution to journalArticleScientificpeer-review

MiRNA profiles in lymphoblastoid cell lines of finnish prostate cancer families

Fischer, D., Wahlfors, T., Mattila, H., Oja, H., Tammela, T. L. J. & Schleutker, J., 28 May 2015, In : PLoS ONE. 10, 5, e0127427.

Research output: Contribution to journalArticleScientificpeer-review

Fine-mapping the 2q37 and 17q11.2-q22 loci for novel genes and sequence variants associated with a genetic predisposition to prostate cancer

Laitinen, V. H., Rantapero, T., Fischer, D., Vuorinen, E. M., Tammela, T. L. J., Wahlfors, T. & Schleutker, J., 15 May 2015, In : International Journal of Cancer. 136, 10, p. 2316-2327 12 p.

Research output: Contribution to journalArticleScientificpeer-review

The Finnish prostate cancer screening trial: Analyses on the screening failures

Kilpeläinen, T. P., Tammela, T. L. J., Malila, N., Hakama, M., Santti, H., Määttänen, L., Stenman, U. H., Kujala, P. & Auvinen, A., 15 May 2015, In : International Journal of Cancer. 136, 10, p. 2437-2443 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data

Matos Simoes, R. D., Dalleau, S., Williamson, K. E. & Emmert-Streib, F., 14 May 2015, In : BMC Systems Biology. 9, 21.

Research output: Contribution to journalArticleScientificpeer-review

Antiarrhythmic effects of dantrolene in patients with catecholaminergic polymorphic ventricular tachycardia and replication of the responses using iPSC models

Penttinen, K., Swan, H., Vanninen, S., Paavola, J., Lahtinen, A. M., Kontula, K. & Aalto-Setälä, K., 1 May 2015, In : PLoS ONE. 10, 5, e0125366.

Research output: Contribution to journalArticleScientificpeer-review

Biomimetic collagen I and IV double layer Langmuir-Schaefer films asmicroenvironment for human pluripotent stem cell derived retinal pigment epithelial cells

Sorkio, A. E., Vuorimaa-Laukkanen, E. P., Hakola, H. M., Liang, H., Ujula, T. A., Valle-Delgado, J. J., Österberg, M., Yliperttula, M. L. & Skottman, H., 1 May 2015, In : Biomaterials. 51, p. 257-269 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Family history in the finnish prostate cancer screening trial

Saarimäki, L., Tammela, T. L., Määttänen, L., Taari, K., Kujala, P. M., Raitanen, J. & Auvinen, A., 1 May 2015, In : International Journal of Cancer. 136, 9, p. 2172-2177 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Microarray analysis of differentially expressed genes in ovarian and fallopian tube epithelium from risk-reducing salpingo-oophorectomies

Veskimäe, K., Staff, S., Tabaro, F., Nykter, M., Isola, J. & Mäenpää, J., 1 May 2015, In : Genes Chromosomes and Cancer. 54, 5, p. 276-287 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway

Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S., 1 May 2015, In : CELL DEATH AND DISEASE. 6, 5, e1752.

Research output: Contribution to journalArticleScientificpeer-review

Sec14-nodulin proteins and the patterning of phosphoinositide landmarks for developmental control of membrane morphogenesis

Ghosh, R., De Campos, M. K. F., Huang, J., Huh, S. K., Orlowski, A., Yang, Y., Tripathi, A., Nile, A., Lee, H-C., Dynowski, M., Schäfer, H., Róg, T., Lete, M. G., Ahyayauch, H., Alonso, A., Vattulainen, I., Igumenova, T. I., Schaaf, G. & Bankaitis, V. A., 1 May 2015, In : Molecular Biology of the Cell. 26, 9, p. 1764-1781 18 p.

Research output: Contribution to journalArticleScientificpeer-review

Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins

Raghupathy, R., Anilkumar, A. A., Polley, A., Singh, P. P., Yadav, M., Johnson, C., Suryawanshi, S., Saikam, V., Sawant, S. D., Panda, A., Guo, Z., Vishwakarma, R. A., Rao, M. & Mayor, S., 23 Apr 2015, In : Cell. 161, 3, p. 581-594 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase

Sharma, V., Ala-Vannesluoma, P., Vattulainen, I., Wikström, M. & Róg, T., 17 Apr 2015, In : Biochimica et Biophysica Acta: Bioenergetics. 1847, 8, p. 690-697 8 p.

Research output: Contribution to journalArticleScientificpeer-review

European code against cancer 4th edition: 12 ways to reduce your cancer risk

Schüz, J., Espina, C., Villain, P., Herrero, R., Leon, M. E., Minozzi, S., Romieu, I., Segnan, N., Wardle, J., Wiseman, M., Belardelli, F., Bettcher, D., Cavalli, F., Galea, G., Lenoir, G., Martin-Moreno, J. M., Nicula, F. A., Olsen, J. H., Patnick, J., Primic-Zakelj, M., Puska, P., Van Leeuwen, F. E., Wiestler, O., Zatonski, W., Guha, N., Kralikova, E., McNeill, A., Peruga, A., Anderson, A., Berrino, F., Boutron-Ruault, M. C., Cecchini, M., Key, T. J., Leitzmann, M., Norat, T., Powers, H. J., Scoccianti, C., Auvinen, A., de Vries, E., Erdmann, F., Greinert, R., Harrison, J., Kesminiene, A., McColl, N., Friis, S., Kogevinas, M., Saracci, R., Straif, K., Vainio, H., Almonte, M., Anttila, A., De Vuyst, H., Dillner, J., Franceschi, S., Gonzalez, P., Hall, A., Park, J. Y., Armaroli, P., Atkin, W., Dean, P. B., de Koning, H., Dillner, L., Kuipers, E., Lansdorp-Vogelaar, I., Paci, E., Regula, J., Suonio, E., Törnberg, S., Wood, L. F., Gaudin, N., Frie, K. G., Terrasse, V., Winstanley, K., Bellisario, C., Biagioli, E., Cinquini, M., Gianola, S., Lorenzo, M. G., von Karsa, L. & Lignini, T., 9 Apr 2015, In : CANCER EPIDEMIOLOGY. 39, p. S1-S10

Research output: Contribution to journalArticleScientificpeer-review

A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstruction

Moriya, T., Acar, E., Cheng, R. H. & Ruotsalainen, U., 3 Apr 2015, In : Journal of Structural Biology. 191, 3, p. 318–331 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Early effects of adjuvant breast cancer radiotherapy on right ventricular systolic and diastolic function

Tuohinen, S. S., Skyttä, T., Virtanen, V., Luukkaala, T., Kellokumpu-Lehtinen, P. L. & Raatikainen, P., 1 Apr 2015, In : Anticancer Research. 35, 4, p. 2141-2147 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Low-dose ionising radiation and cardiovascular diseases - Strategies for molecular epidemiological studies in Europe

Kreuzer, M., Auvinen, A., Cardis, E., Hall, J., Jourdain, J. R., Laurier, D., Little, M. P., Peters, A., Raj, K., Russell, N. S., Tapio, S., Zhang, W. & Gomolka, M., 1 Apr 2015, In : MUTATION RESEARCH: REVIEWS IN MUTATION RESEARCH. 764, p. 90-100 11 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs

Liu, J., Jin, C., Cherian, R. M., Karlsson, N. G. & Holgersson, J., 1 Apr 2015, In : Journal of Biotechnology. 199, p. 77-89 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Ageing-associated changes in the human DNA methylome: Genomic locations and effects on gene expression

Marttila, S., Kananen, L., Häyrynen, S., Jylhävä, J., Nevalainen, T., Hervonen, A., Jylhä, M., Nykter, M. & Hurme, M., 14 Mar 2015, In : BMC Genomics. 16, 1, 179.

Research output: Contribution to journalArticleScientificpeer-review

Multi-stable dynamics of the non-adiabatic repressilator

Potapov, I., Zhurov, B. & Volkov, E., 6 Mar 2015, In : Journal of the Royal Society. Interface. 12, 104, 20141315.

Research output: Contribution to journalArticleScientificpeer-review

Light emitting fabric technologies for photodynamic therapy

Mordon, S., Cochrane, C., Tylcz, J. B., Betrouni, N., Mortier, L. & Koncar, V., 1 Mar 2015, In : PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 12, 1, p. 1-8 8 p.

Research output: Contribution to journalArticleScientificpeer-review

The concurrent use of aromatase inhibitors and radiotherapy induces echocardiographic changes in patients with breast cancer

Skyttä, T., Tuohinen, S., Virtanen, V., Raatikainen, P. & Kellokumpu-Lehtinen, P. L., 1 Mar 2015, In : Anticancer Research. 35, 3, p. 1559-1566 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Thermal transport characteristics of human skin measured in vivo using ultrathin conformal arrays of thermal sensors and actuators

Webb, R. C., Pielak, R. M., Bastien, P., Ayers, J., Niittynen, J., Kurniawan, J., Manco, M., Lin, A., Cho, N. H., Malyrchuk, V., Balooch, G. & Rogers, J. A., 6 Feb 2015, In : PLoS ONE. 10, 2, e0118131.

Research output: Contribution to journalArticleScientificpeer-review

Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds

Nybond, S., Ghemtio, L., Nawrot, D. A., Karp, M., Xhaard, H. & Tammela, P., 1 Feb 2015, In : Assay and Drug Development Technologies. 13, 1, p. 25-33 9 p.

Research output: Contribution to journalArticleScientificpeer-review

VEGFR3 and CD31 as prognostic factors in renal cell cancer

Virman, J. P., Bono, P., Luukkaala, T., Sunela, K., Kujala, P. & Kellokumpu-Lehtinen, P. L., 1 Feb 2015, In : Anticancer Research. 35, 2, p. 921-927 7 p.

Research output: Contribution to journalArticleScientificpeer-review

UniProt: A hub for protein information

Bateman, A., Martin, M. J., O'Donovan, C., Magrane, M., Apweiler, R., Alpi, E., Antunes, R., Arganiska, J., Bely, B., Bingley, M., Bonilla, C., Britto, R., Bursteinas, B., Chavali, G., Cibrian-Uhalte, E., Da Silva, A., De Giorgi, M., Dogan, T., Fazzini, F., Gane, P., Castro, L. G., Garmiri, P., Hatton-Ellis, E., Hieta, R., Huntley, R., Legge, D., Liu, W., Luo, J., Macdougall, A., Mutowo, P., Nightingale, A., Orchard, S., Pichler, K., Poggioli, D., Pundir, S., Pureza, L., Qi, G., Rosanoff, S., Saidi, R., Sawford, T., Shypitsyna, A., Turner, E., Volynkin, V., Wardell, T., Watkins, X., Zellner, H., Cowley, A., Figueira, L., Li, W., McWilliam, H., Lopez, R., Xenarios, I., Bougueleret, L., Bridge, A., Poux, S., Redaschi, N., Aimo, L., Argoud-Puy, G., Auchincloss, A., Axelsen, K., Bansal, P., Baratin, D., Blatter, M. C., Boeckmann, B., Bolleman, J., Boutet, E., Breuza, L., Casal-Casas, C., De Castro, E., Coudert, E., Cuche, B., Doche, M., Dornevil, D., Duvaud, S., Estreicher, A., Famiglietti, L., Feuermann, M., Gasteiger, E., Gehant, S., Gerritsen, V., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., Jungo, F., Keller, G., Lara, V., Lemercier, P., Lieberherr, D., Lombardot, T., Martin, X., Masson, P., Morgat, A., Neto, T., Nouspikel, N., Paesano, S., Pedruzzi, I., Pilbout, S., Pozzato, M., Pruess, M., Rivoire, C., Roechert, B., Schneider, M., Sigrist, C., Sonesson, K., Staehli, S., Stutz, A., Sundaram, S., Tognolli, M., Verbregue, L., Veuthey, A. L., Wu, C. H., Arighi, C. N., Arminski, L., Chen, C., Chen, Y., Garavelli, J. S., Huang, H., Laiho, K., McGarvey, P., Natale, D. A., Suzek, B. E., Vinayaka, C. R., Wang, Q., Wang, Y., Yeh, L. S., Yerramalla, M. S. & Zhang, J., 28 Jan 2015, In : Nucleic Acids Research. 43, D1, p. D204-D212

Research output: Contribution to journalArticleScientificpeer-review

Computational cancer biology: education is a natural key to many locks

Emmert-Streib, F., Zhang, S. D. & Hamilton, P., 15 Jan 2015, In : BMC Cancer. 15, 1, 7.

Research output: Contribution to journalArticleScientificpeer-review

Oxidation half-reaction of aqueous nucleosides and nucleotides via photoelectron spectroscopy augmented by ab initio calculations

Schroeder, C. A., Pluharová, E., Seidel, R., Schroeder, W. P., Faubel, M., Slavíçek, P., Winter, B., Jungwirth, P. & Bradforth, S. E., 14 Jan 2015, In : Journal of the American Chemical Society. 137, 1, p. 201-209 9 p.

Research output: Contribution to journalArticleScientificpeer-review

A motion artifact generation and assessment system for the rapid testing of surface biopotential electrodes

Cömert, A. & Hyttinen, J., 1 Jan 2015, In : Physiological Measurement. 36, 1, p. 1-25 25 p., 1.

Research output: Contribution to journalArticleScientificpeer-review

Cost-effectiveness of prostate cancer screening: A simulation study based on ERSPC data

Heijnsdijk, E. A. M., De Carvalho, T. M. D., Auvinen, A., Zappa, M., Nelen, V., Kwiatkowski, M., Villers, A., Páez, A., Moss, S. M., Tammela, T. L. J., Recker, F., Denis, L., Carlsson, S. V., Wever, E. M., Bangma, C. H., Schröder, F. H., Roobol, M. J., Hugosson, J. & De Koning, H. J., 1 Jan 2015, In : JOURNAL OF THE NATIONAL CANCER INSTITUTE. 107, 1, dju366.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data

Häkkinen, A. & Ribeiro, A. S., 1 Jan 2015, In : Bioinformatics. 31, 1, p. 69-75 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Adaptive autoregressive model for reduction of noise in SPECT

Takalo, R., Hytti, H., Ihalainen, H. & Sohlberg, A., 2015, In : Computational and Mathematical Methods in Medicine. 2015, 494691.

Research output: Contribution to journalArticleScientificpeer-review

Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning

Lehtonen, S. I., Taskinen, B., Ojala, E., Kukkurainen, S., Rahikainen, R., Riihimäki, T. A., Laitinen, O. H., Kulomaa, M. S. & Hytönen, V. P., 2015, In : Protein Engineering Design and Selection. 28, 1, p. 23-28 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate

Kulig, W., Jurkiewicz, P., Olzyńska, A., Tynkkynen, J., Javanainen, M., Manna, M., Rog, T., Hof, M., Vattulainen, I. & Jungwirth, P., 2015, In : Biochimica et Biophysica Acta: Biomembranes. 1848, 2, p. 422-432 11 p.

Research output: Contribution to journalArticleScientificpeer-review

I microRNA nella placca aterosclerotica

Raitoharju, E., Oksala, N. & Lehtimäki, T., 2015, In : Biochimica Clinica. 39, 1, p. 56-67 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives

Akimova, A. V., Rychkov, G. N., Grin, M. A., Filippova, N. A., Golovina, G. V., Durandin, N. A., Vinogradov, A. M., Kokrashvili, T. A., Mironov, A. F., Shtil, A. A. & Kuzmin, V. A., 2015, In : ACTA NATURAE. 7, 1, p. 109-116 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux

Tienaho, J., Sarjala, T., Franzén, R. & Karp, M., 2015, In : Journal of Microbiological Methods. 118, p. 78-80 3 p., 4723.

Research output: Contribution to journalArticleScientificpeer-review

Multifunctional ultrasmall nanoplatforms for vascular-targeted interstitial photodynamic therapy of brain tumors guided by real-time MRI

Bechet, D., Auger, F., Couleaud, P., Marty, E., Ravasi, L., Durieux, N., Bonnet, C., Plénat, F., Frochot, C., Mordon, S., Tillement, O., Vanderesse, R., Lux, F., Perriat, P., Guillemin, F. & Barberi-Heyob, M., 2015, In : NANOMEDICINE: NANOTECHNOLOGY BIOLOGY AND MEDICINE. 11, 3, p. 657-670 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Switchavidin: Reversible biotin-avidin-biotin bridges with high affinity and specificity

Taskinen, B., Zauner, D., Lehtonen, S. I., Koskinen, M., Thomson, C., Kähkönen, N., Kukkurainen, S., Määttä, J. A. E., Ihalainen, T. O., Kulomaa, M. S., Gruber, H. J. & Hytönen, V. P., 17 Dec 2014, In : Bioconjugate Chemistry. 25, 12, p. 2233-2243 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Comparative evaluation of gene set analysis approaches for RNA-Seq data

Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 5 Dec 2014, In : BMC Bioinformatics. 15, 1, 397.

Research output: Contribution to journalArticleScientificpeer-review

Rationally engineered synthetic coculture for improved biomass and product formation

Santala, S., Karp, M. & Santala, V., 3 Dec 2014, In : PLoS ONE. 9, 12, e113786.

Research output: Contribution to journalArticleScientificpeer-review

FRα: une cible pour la thérapie photodynamique prophylactique des métastases péritonéales ovariennes?

Azaïs, H., Moussaron, A., Bach, S. K., Bassil, A., Betrouni, N., Frochot, C., Collinet, P. & Mordon, S., 1 Dec 2014, In : BULLETIN DU CANCER. 101, 12, p. 1109-1113 5 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Interface matters: The stiffness route to stability of a thermophilic tetrameric malate dehydrogenase

Kalimeri, M., Girard, E., Madern, D. & Sterpone, F., 1 Dec 2014, In : PLoS ONE. 9, 12, e113895.

Research output: Contribution to journalArticleScientificpeer-review

The talin-integrin interface under mechanical stress

Kukkurainen, S., Määttä, J. A., Saeger, J., Valjakka, J., Vogel, V. & Hytönen, V. P., 1 Dec 2014, In : Molecular Biosystems. 10, 12, p. 3217-3228 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Toward computational cumulative biology by combining models of biological datasets

Faisal, A., Peltonen, J., Georgii, E., Rung, J. & Kaski, S., 26 Nov 2014, In : PLoS ONE. 9, 11, e113053.

Research output: Contribution to journalArticleScientificpeer-review

Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome

Takala, H., Lehtivuori, H., Hammarén, H., Hytönen, V. P. & Ihalainen, J. A., 18 Nov 2014, In : Biochemistry. 53, 45, p. 7076-7085 10 p.

Research output: Contribution to journalArticleScientificpeer-review

A framework for estimating radiation-related cancer risks in Japan from the 2011 Fukushima nuclear accident

Walsh, L., Zhang, W., Shore, R. E., Auvinen, A., Laurier, D., Wakeford, R., Jacob, P., Gent, N., Anspaugh, L. R., Schüz, J., Kesminiene, A., Van Deventer, E., Tritscher, A. & Del Rosarion Pérez, M., 1 Nov 2014, In : RADIATION RESEARCH. 182, 5, p. 556-572 17 p.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of optimal matching position for orthogonal kV setup images and minimal setup margins in radiotherapy of whole breast and lymph node areas

Laaksomaa, M., Kapanen, M., Skyttä, T., Peltola, S., Hyödynmaa, S. & Kellokumpu-Lehtinen, P. L., 1 Nov 2014, In : Reports of Practical Oncology and Radiotherapy. 19, 6, p. 369-375 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Statin use and breast cancer survival: A nationwide cohort study from Finland

Murtola, T. J., Visvanathan, K., Artama, M., Vainio, H. & Pukkala, E., 20 Oct 2014, In : PLoS ONE. 9, 10, e110231.

Research output: Contribution to journalArticleScientificpeer-review

Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays

Deng, Y., Alicea-Velázquez, N. L., Bannwarth, L., Lehtonen, S. I., Boggon, T. J., Cheng, H. C., Hytönen, V. P. & Turk, B. E., 3 Oct 2014, In : Journal of Proteome Research. 13, 10, p. 4339-4346 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Different culture conditions modulate the immunological properties of adipose stem cells

Patrikoski, M., Sivula, J., Huhtala, H., Helminen, M., Salo, F., Mannerström, B. & Miettinen, S., 2 Oct 2014, In : Stem Cells Translational Medicine. 3, 10, p. 1220-1230 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography

Rasappa, S., Schulte, L., Borah, D., Morris, M. A. & Ndoni, S., 1 Oct 2014, In : Colloids and Interface Science Communications. 2, p. 1-5 5 p.

Research output: Contribution to journalArticleScientificpeer-review

A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer

Al Olama, A. A., Kote-Jarai, Z., Berndt, S. I., Conti, D. V., Schumacher, F., Han, Y., Benlloch, S., Hazelett, D. J., Wang, Z., Saunders, E., Leongamornlert, D., Lindstrom, S., Jugurnauth-Little, S., Dadaev, T., Tymrakiewicz, M., Stram, D. O., Rand, K., Wan, P., Stram, A., Sheng, X., Pooler, L. C., Park, K., Xia, L., Tyrer, J., Kolonel, L. N., Le Marchand, L., Hoover, R. N., Machiela, M. J., Yeager, M., Burdette, L., Chung, C. C., Hutchinson, A., Yu, K., Goh, C., Ahmed, M., Govindasami, K., Guy, M., Tammela, T. L. J., Auvinen, A., Wahlfors, T., Schleutker, J., Visakorpi, T., Leinonen, K. A., Xu, J., Aly, M., Donovan, J., Travis, R. C., Key, T. J., Siddiq, A., Canzian, F., Khaw, K. T., Takahashi, A., Kubo, M., Pharoah, P., Pashayan, N., Weischer, M., Nordestgaard, B. G., Nielsen, S. F., Klarskov, P., Røder, M. A., Iversen, P., Thibodeau, S. N., McDonnell, S. K., Schaid, D. J., Stanford, J. L., Kolb, S., Holt, S., Knudsen, B., Coll, A. H., Gapstur, S. M., Diver, W. R., Stevens, V. L., Maier, C., Luedeke, M., Herkommer, K., Rinckleb, A. E., Strom, S. S., Pettaway, C., Yeboah, E. D., Tettey, Y., Biritwum, R. B., Adjei, A. A., Tay, E., Truelove, A., Niwa, S., Chokkalingam, A. P., Cannon-Albright, L., Cybulski, C., Wokołorczyk, D., Kluzniak, W., Park, J., Sellers, T., Lin, H. Y., Isaacs, W. B., Partin, A. W., Brenner, H., Dieffenbach, A. K., Stegmaier, C., Chen, C., Giovannucci, E. L., Ma, J., Stampfer, M., Penney, K. L., Mucci, L., John, E. M., Ingles, S. A., Kittles, R. A., Murphy, A. B., Pandha, H., Michael, A., Kierzek, A. M., Blot, W., Signorello, L. B., Zheng, W., Albanes, D., Virtamo, J., Weinstein, S., Nemesure, B., Carpten, J., Leske, C., Wu, S. Y., Hennis, A., Kibel, A. S., Rybicki, B. A., Neslund-Dudas, C., Hsing, A. W., Chu, L., Goodman, P. J., Klein, E. A., Lilly Zheng, S., Batra, J., Clements, J., Spurdle, A., Teixeira, M. R., Paulo, P., Maia, S., Slavov, C., Kaneva, R., Mitev, V., Witte, J. S., Casey, G., Gillanders, E. M., Seminara, D., Riboli, E., Hamdy, F. C., Coetzee, G. A., Li, Q., Freedman, M. L., Hunter, D. J., Muir, K., Gronberg, H., Neal, D. E., Southey, M., Giles, G. G., Severi, G., Cook, M. B., Nakagawa, H., Wiklund, F., Kraft, P., Chanock, S. J., Henderson, B. E., Easton, D. F., Eeles, R. A. & Haiman, C. A., 26 Sep 2014, In : Nature Genetics. 46, 10, p. 1103-1109 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production

Praveenkumar, R., Kim, B., Choi, E., Lee, K., Cho, S., Hyun, J. S., Park, J. Y., Lee, Y. C., Lee, H. U., Lee, J. S. & Oh, Y. K., 12 Sep 2014, In : Bioprocess and Biosystems Engineering. 37, 10, p. 2083-2094 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Pharmacokinetics of an injectable modified-release 2-hydroxyflutamide formulation in the human prostate gland using a semiphysiologically based biopharmaceutical model

Sjögren, E., Tammela, T. L., Lennernäs, B., Taari, K., Isotalo, T., Malmsten, L. Å., Axén, N. & Lennernäs, H., 2 Sep 2014, In : Molecular Pharmaceutics. 11, 9, p. 3097-3111 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Advanced Material-Based Sensing Structures

Tentzeris, M. M., Kim, S., Lakafosis, V., Lee, H., Le, T., Vyas, R., Mukala, S. & Traille, A., 25 Aug 2014, Handbook of Biomedical Telemetry. Wiley-Blackwell, p. 633-689 57 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Power Issues in Biomedical Telemetry

Tentzeris, M. M., Vyas, R., Wei, W., Kawahara, Y., Yang, L., Georgakopoulos, S., Lakafosis, V., Kim, S., Lee, H., Le, T., Mukala, S. & Traille, A., 25 Aug 2014, Handbook of Biomedical Telemetry. Wiley-Blackwell, p. 108-130 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Cruciate ligament reconstruction and risk of knee osteoarthritis: The association between cruciate ligament injury and post-traumatic osteoarthritis. a population based nationwide study in Sweden, 1987-2009

Nordenvall, R., Bahmanyar, S., Adami, J., Mattila, V. M. & Felländer-Tsai, L., 22 Aug 2014, In : PLoS ONE. 9, 8, e104681.

Research output: Contribution to journalArticleScientificpeer-review

Effect of Omeprazole Dose, Nonsteroidal Anti-inflammatory Agents, and Smoking on Repair Mechanisms in Acute Peptic Ulcer Bleeding

Rantanen, T., Udd, M., Honkanen, T., Miettinen, P., Kärjä, V., Rantanen, L., Julkunen, R., Mustonen, H., Paavonen, T. & Oksala, N., 20 Aug 2014, In : Digestive Diseases and Sciences. 59, 11, p. 2666-2674 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Mapping of the chromosomal amplification 1p21-22 in bladder cancer

Scaravilli, M., Asero, P., Tammela, T. L., Visakorpi, T. & Saramäki, O. R., 18 Aug 2014, In : BMC RESEARCH NOTES. 7, 1, 547.

Research output: Contribution to journalArticleScientificpeer-review

Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia

Spencer, C. I., Baba, S., Nakamura, K., Hua, E. A., Sears, M. A. F., Fu, C. C., Zhang, J., Balijepalli, S., Tomoda, K., Hayashi, Y., Lizarraga, P., Wojciak, J., Scheinman, M. M., Aalto-Setälä, K., Makielski, J. C., January, C. T., Healy, K. E., Kamp, T. J., Yamanaka, S. & Conklin, B. R., 12 Aug 2014, In : Stem Cell Reports. 3, 2, p. 269-281 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Claudins as prognostic factors for renal cell cancer

Virman, J. P., Soini, Y., Kujala, P., Luukkaala, T., Salminen, T., Sunela, K. & Kellokumpu-Lehtinen, P. L., 1 Aug 2014, In : Anticancer Research. 34, 8, p. 4181-4188 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces

Kurppa, K., Hytönen, V. P., Nakari-Setälä, T., Kulomaa, M. S. & Linder, M. B., 1 Aug 2014, In : Colloids and Surfaces B: Biointerfaces. 120, p. 102-109 8 p.

Research output: Contribution to journalArticleScientificpeer-review

ERBB4 promoter polymorphism is associated with poor distant disease-free survival in high-risk early breast cancer

Kurppa, K. J., Rokavec, M., Sundvall, M., Kellokumpu-Lehtinen, P. L., Joensuu, H., Brauch, H. & Elenius, K., 18 Jul 2014, In : PLoS ONE. 9, 7, e102388.

Research output: Contribution to journalArticleScientificpeer-review

Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study.

Raitoharju, E., Seppälä, I., Oksala, N., Lyytikäinen, L. P., Raitakari, O., Viikari, J., Ala-Korpela, M., Soininen, P., Kangas, A. J., Waldenberger, M., Klopp, N., Illig, T., Leiviskä, J., Loo, B. M., Hutri-Kähönen, N., Kähönen, M., Laaksonen, R. & Lehtimäki, T., 25 Jun 2014, In : Molecular and Cellular Endocrinology. 391, 1-2, p. 41-49 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Chimeric avidin - NMR structure and dynamics of a 56 kDa homotetrameric thermostable protein

Tossavainen, H., Kukkurainen, S., Määttä, J. A. E., Kähkönen, N., Pihlajamaa, T., Hytönen, V. P., Kulomaa, M. S. & Permi, P., 24 Jun 2014, In : PLoS ONE. 9, 6, e100564.

Research output: Contribution to journalArticleScientificpeer-review

Hydration of the chloride ion in concentrated aqueous solutions using neutron scattering and molecular dynamics

Pluhařová, E., Fischer, H. E., Mason, P. E. & Jungwirth, P., 19 May 2014, In : Molecular Physics. 112, 9-10, p. 1230-1240 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Light-fuelled transport of large dendrimers and proteins

Koskela, J. E., Liljeström, V., Lim, J., Simanek, E. E., Ras, R. H. A., Priimagi, A. & Kostiainen, M. A., 14 May 2014, In : Journal of the American Chemical Society. 136, 19, p. 6850-6853 4 p.

Research output: Contribution to journalArticleScientificpeer-review

RE: Prostate-specific antigen screening trials and prostate cancer deaths: The androgen deprivation connection

Carlsson, S., Roobol, M. J., Schröder, F. H., Hugosson, J. & Auvinen, A., 14 May 2014, In : JOURNAL OF THE NATIONAL CANCER INSTITUTE. 106, 5, dju079.

Research output: Contribution to journalLetterScientificpeer-review

AROS has a context-dependent effect on SIRT1

Kokkola, T., Suuronen, T., Molnár, F., Määttä, J., Salminen, A., Jarho, E. M. & Lahtela-Kakkonen, M., 2 May 2014, In : FEBS Letters. 588, 9, p. 1523-1528 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Chernobyl fallout and cancer incidence in Finland 1988-2007

Auvinen, A., Seppä, K., Pasanen, K., Kurttio, P., Patama, T., Pukkala, E., Heinävaara, S., Arvela, H., Verkasalo, P. & Hakulinen, T., 1 May 2014, In : International Journal of Cancer. 134, 9, p. 2253-2263 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Impact of epoetin-beta on anemia and health-related quality of life in cancer patients: A prospective observational study using the generic 15D instrument

Mäenpa, J., Puistola, U., Riska, H., Sintonen, H., Saarni, O., Juvonen, E. & Kellokumpu-Lehtinen, P. L., 1 May 2014, In : Anticancer Research. 34, 5, p. 2325-2330 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Interrelations of graph distance measures based on topological indices

Dehmer, M., Emmert-Streib, F. & Shi, Y., 23 Apr 2014, In : PLoS ONE. 9, 4, e94985.

Research output: Contribution to journalArticleScientificpeer-review

Hypermethylation of the GABRẼmiR-452̃miR-224 promoter in prostate cancer predicts biochemical recurrence after radical prostatectomy

Kristensen, H., Haldrup, C., Strand, S., Mundbjerg, K., Mortensen, M. M., Thorsen, K., Ostenfeld, M. S., Wild, P. J., Arsov, C., Goering, W., Visakorpi, T., Egevad, L., Lindberg, J., Grönberg, H., Høyer, S., Borre, M., Orntoft, T. F. & Sørensen, K. D., 15 Apr 2014, In : Clinical Cancer Research. 20, 8, p. 2169-2181 13 p.

Research output: Contribution to journalArticleScientificpeer-review

NetBioV: An R package for visualizing large network data in biology and medicine

Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2 Apr 2014, In : Bioinformatics. 30, 19, p. 2834-2836 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure

Ciranna, A., Pawar, S. S., Santala, V., Karp, M. & van Niel, E. W. J., 28 Mar 2014, In : Microbial Cell Factories. 13, 1, 48.

Research output: Contribution to journalArticleScientificpeer-review

Rewiring the wax ester production pathway of acinetobacter baylyi ADP1

Santala, S., Efimova, E., Koskinen, P., Karp, M. T. & Santala, V., 21 Mar 2014, In : ACS Synthetic Biology. 3, 3, p. 145-151 7 p.

Research output: Contribution to journalArticleScientificpeer-review

A novel chimeric avidin with increased thermal stability using DNA shuffling

Taskinen, B., Airenne, T. T., Jänis, J., Rahikainen, R., Johnson, M. S., Kulomaa, M. S. & Hytönen, V. P., 14 Mar 2014, In : PLoS ONE. 9, 3, e92058.

Research output: Contribution to journalArticleScientificpeer-review

KPNA7, a nuclear transport receptor, promotes malignant properties of pancreatic cancer cells in vitro

Laurila, E., Vuorinen, E., Savinainen, K., Rauhala, H. & Kallioniemi, A., 10 Mar 2014, In : Experimental Cell Research. 322, 1, p. 159-167 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Network-based methods for computational diagnostics by means of R

Mueller, L. A. J., Dehmer, M. & Emmert-Streib, F., 1 Mar 2014, Computational Medicine: Tools and Challenges. Springer-Verlag Wien, p. 185-197 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Quality of life of recently treated patients with breast cancer

Penttinen, H., Rautalin, M., Roine, R., Jahkola, T., Kellokumpu-Lehtinen, P. L., Huovinen, R., Kautiainen, H., Järvenpää, S., Hakamies-Blomqvist, L., Blomqvist, C. & Saarto, T., 1 Mar 2014, In : Anticancer Research. 34, 3, p. 1201-1206 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Association analysis of 9,560 prostate cancer cases from the International Consortium of Prostate Cancer Genetics confirms the role of reported prostate cancer associated SNPs for familial disease

Teerlink, C. C., Thibodeau, S. N., McDonnell, S. K., Schaid, D. J., Rinckleb, A., Maier, C., Vogel, W., Cancel-Tassin, G., Egrot, C., Cussenot, O., Foulkes, W. D., Giles, G. G., Hopper, J. L., Severi, G., Eeles, R., Easton, D., Kote-Jarai, Z., Guy, M., Cooney, K. A., Ray, A. M., Zuhlke, K. A., Lange, E. M., Fitzgerald, L. M., Stanford, J. L., Ostrander, E. A., Wiley, K. E., Isaacs, S. D., Walsh, P. C., Isaacs, W. B., Wahlfors, T., Tammela, T., Schleutker, J., Wiklund, F., Grönberg, H., Emanuelsson, M., Carpten, J., Bailey-Wilson, J., Whittemore, A. S., Oakley-Girvan, I., Hsieh, C. L., Catalona, W. J., Zheng, S. L., Jin, G., Lu, L., Xu, J., Camp, N. J. & Cannon-Albright, L. A., Mar 2014, In : HUMAN GENETICS. 133, 3, p. 347-356 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Assessing interactions of two loci (rs4242382 and rs10486567) in familial prostate cancer: Statistical evaluation of epistasis

Chen, L. S., Fann, J. C. Y., Chiu, S. Y. H., Yen, A. M. F., Wahlfors, T., Tammela, T. L., Chen, H. H., Auvinen, A. & Schleutker, J., 25 Feb 2014, In : PLoS ONE. 9, 2, e89508.

Research output: Contribution to journalArticleScientificpeer-review

Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells

Mikhailova, A., Ilmarinen, T., Uusitalo, H. & Skottman, H., 11 Feb 2014, In : Stem Cell Reports. 2, 2, p. 219-231 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors

Planello, A. C., Ji, J., Sharma, V., Singhania, R., Mbabaali, F., Müller, F., Alfaro, J. A., Bock, C., De Carvalho, D. D. & Batada, N. N., 7 Feb 2014, In : Cell Regeneration. 3, 1, 4.

Research output: Contribution to journalArticleScientificpeer-review

MicroRNAs in atherosclerosis

Hosin, A. A., Prasad, A., Viiri, L. E., Davies, A. H. & Shalhoub, J., 6 Feb 2014, In : Journal of Vascular Research. 51, 5, p. 338-349 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating

Sorkio, A., Hongisto, H., Kaarniranta, K., Uusitalo, H., Juuti-Uusitalo, K. & Skottman, H., 1 Feb 2014, In : Tissue Engineering Part A. 20, 3-4, p. 622-634 13 p.

Research output: Contribution to journalArticleScientificpeer-review

A 3D Alzheimer's disease culture model and the induction of P21-activated kinase mediated sensing in iPSC derived neurons

Zhang, D., Pekkanen-Mattila, M., Shahsavani, M., Falk, A., Teixeira, A. I. & Herland, A., Feb 2014, In : Biomaterials. 35, 5, p. 1420-1428 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Investigating the binding behaviour of two avidin-based testosterone binders using molecular recognition force spectroscopy

Rangl, M., Leitner, M., Riihimäki, T., Lehtonen, S., Hytönen, V. P., Gruber, H. J., Kulomaa, M., Hinterdorfer, P. & Ebner, A., Feb 2014, In : Journal of Molecular Recognition. 27, 2, p. 92-97 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Dry computational approaches for wet medical problems

Emmert-Streib, F., Zhang, S. D. & Hamilton, P., 25 Jan 2014, In : Journal of Translational Medicine. 12, 1, 26.

Research output: Contribution to journalArticleScientificpeer-review

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells

Ji, J., Sharma, V., Qi, S., Guarch, M. E., Zhao, P., Luo, Z., Fan, W., Wang, Y., Mbabaali, F., Neculai, D., Esteban, M. A., McPherson, J. D. & Batada, N. N., 14 Jan 2014, In : Stem Cell Reports. 2, 1, p. 44-51 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Activities at the Universal Protein Resource (UniProt)

Apweiler, R., Bateman, A., Martin, M. J., O'Donovan, C., Magrane, M., Alam-Faruque, Y., Alpi, E., Antunes, R., Arganiska, J., Casanova, E. B., Bely, B., Bingley, M., Bonilla, C., Britto, R., Bursteinas, B., Chan, W. M., Chavali, G., Cibrian-Uhalte, E., Da Silva, A., De Giorgi, M., Fazzini, F., Gane, P., Castro, L. G., Garmiri, P., Hatton-Ellis, E., Hieta, R., Huntley, R., Legge, D., Liu, W., Luo, J., MacDougall, A., Mutowo, P., Nightingale, A., Orchard, S., Pichler, K., Poggioli, D., Pundir, S., Pureza, L., Qi, G., Rosanoff, S., Sawford, T., Shypitsyna, A., Turner, E., Volynkin, V., Wardell, T., Watkins, X., Corbett, M., Donnelly, M., Van Rensburg, P., Goujon, M., McWilliam, H., Lopez, R., Xenarios, I., Bougueleret, L., Bridge, A., Poux, S., Redaschi, N., Aimo, L., Auchincloss, A., Axelsen, K., Bansal, P., Baratin, D., Binz, P. A., Blatter, M. C., Boeckmann, B., Bolleman, J., Boutet, E., Breuza, L., Casal-Casas, C., De Castro, E., Cerutti, L., Coudert, E., Cuche, B., Doche, M., Dornevil, D., Duvaud, S., Estreicher, A., Famiglietti, L., Feuermann, M., Gasteiger, E., Gehant, S., Gerritsen, V., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., James, J., Jungo, F., Keller, G., Lara, V., Lemercier, P., Lew, J., Lieberherr, D., Lombardot, T., Martin, X., Masson, P., Morgat, A., Neto, T., Paesano, S., Pedruzzi, I., Pilbout, S., Pozzato, M., Pruess, M., Rivoire, C., Roechert, B., Schneider, M., Sigrist, C., Sonesson, K., Staehli, S., Stutz, A., Sundaram, S., Tognolli, M., Verbregue, L., Veuthey, A. L., Wu, C. H., Arighi, C. N., Arminski, L., Chen, C., Chen, Y., Garavelli, J. S., Huang, H., Laiho, K., McGarvey, P., Natale, D. A., Suzek, B. E., Vinayaka, C. R., Wang, Q., Wang, Y., Yeh, L. S., Yerramalla, M. S. & Zhang, J., 1 Jan 2014, In : Nucleic Acids Research. 42, D1

Research output: Contribution to journalArticleScientificpeer-review

Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress

Oksala, N. K. J., Ekmekçi, F. G., Özsoy, E., Kirankaya, Ş., Kokkola, T., Emecen, G., Lappalainen, J., Kaarniranta, K. & Atalay, M., 1 Jan 2014, In : REDOX BIOLOGY. 3, p. 25-28 4 p.

Research output: Contribution to journalArticleScientificpeer-review

USP22 regulates oncogenic signaling pathways to drive lethal cancer progression

Schrecengost, R. S., Dean, J. L., Goodwin, J. F., Schiewer, M. J., Urban, M. W., Stanek, T. J., Sussman, R. T., Hicks, J. L., Birbe, R. C., Draganova-Tacheva, R. A., Visakorpi, T., DeMarzo, A. M., McMahon, S. B. & Knudsen, K. E., 1 Jan 2014, In : Cancer Research. 74, 1, p. 272-286 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins

Maria Cherian, R., Gaunitz, S., Nilsson, A., Liu, J., Karlsson, N. G. & Holgersson, J., Jan 2014, In : GLYCOBIOLOGY. 24, 1, p. 26-38 13 p.

Research output: Contribution to journalArticleScientificpeer-review

A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach

Traylor, M., Mäkelä, K. M., Kilarski, L. L., Holliday, E. G., Devan, W. J., Nalls, M. A., Wiggins, K. L., Zhao, W., Cheng, Y. C., Achterberg, S., Malik, R., Sudlow, C., Bevan, S., Raitoharju, E., Oksala, N., Thijs, V., Lemmens, R., Lindgren, A., Slowik, A., Maguire, J. M., Walters, M., Algra, A., Sharma, P., Attia, J. R., Boncoraglio, G. B., Rothwell, P. M., de Bakker, P. I. W., Bis, J. C., Saleheen, D., Kittner, S. J., Mitchell, B. D., Rosand, J., Meschia, J. F., Levi, C., Dichgans, M., Lehtimäki, T., Lewis, C. M. & Markus, H. S., 2014, In : PLOS GENETICS. 10, 7, e1004469.

Research output: Contribution to journalArticleScientificpeer-review

A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding

Huang, Q., Whitington, T., Gao, P., Lindberg, J. F., Yang, Y., Sun, J., Väisänen, M. R., Szulkin, R., Annala, M., Yan, J., Egevad, L. A., Zhang, K., Lin, R., Jolma, A., Nykter, M., Manninen, A., Wiklund, F., Vaarala, M. H., Visakorpi, T., Xu, J., Taipale, J. & Wei, G. H., 2014, In : Nature Genetics. 46, 2, p. 126-135 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Autologous adipose stem cells in treatment of female stress urinary incontinence: Results of a pilot study

Kuismanen, K., Sartoneva, R., Haimi, S., Mannerström, B., Tomás, E., Miettinen, S. & Nieminen, K., 2014, In : Stem Cells Translational Medicine. 3, 8, p. 936-941 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Common features of chromatin in aging and cancer: Cause or coincidence?

Zane, L., Sharma, V. & Misteli, T., 2014, In : TRENDS IN CELL BIOLOGY. 24, 11, p. 686-694 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts

Křížek, T., Kubíčková, A., Hladílková, J., Coufal, P., Heyda, J. & Jungwirth, P., 2014, In : ELECTROPHORESIS. 35, 5, p. 617-624 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Enhancing our understanding of ways to analyze metagenomes

Emmert-Streib, F., 2014, In : Frontiers in Genetics. 5, APR, Article 108.

Research output: Contribution to journalArticleScientificpeer-review

Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy

Kannan, K., Vijayan, D., MubarakAli, D., Praveenkumar, R., Ahamed, A. P. & Thajuddin, N., 2014, In : Biotechnology. 13, 2, p. 46-53 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Functional and genetic analysis of the colon cancer network.

Emmert-Streib, F., de Matos Simoes, R., Glazko, G., McDade, S., Haibe-Kains, B., Holzinger, A., Dehmer, M. & Campbell, F., 2014, In : BMC Bioinformatics. 15, Suppl 6, S6.

Research output: Contribution to journalArticleScientificpeer-review

Indocyanine green: Photosensitizer or chromophore? Still a debate

Giraudeau, C., Moussaron, A., Stallivieri, A., Mordon, S. & Frochot, C., 2014, In : CURRENT MEDICINAL CHEMISTRY. 21, 16, p. 1871-1897 27 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Inference and validation of predictive gene networks from biomedical literature and gene expression data

Olsen, C., Fleming, K., Prendergast, N., Rubio, R., Emmert-Streib, F., Bontempi, G., Haibe-Kains, B. & Quackenbush, J., 2014, In : Genomics. 103, 5-6, p. 329-336 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay

Näreoja, T., Ebner, A., Gruber, H. J., Taskinen, B., Kienberger, F., Hänninen, P. E., Hytönen, V. P., Hinterdorfer, P. & Härmä, H., 2014, In : Analytical and Bioanalytical Chemistry. 406, 2, p. 493-503 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose

Kannisto, M., Aho, T., Karp, M. & Santala, V., 2014, In : Applied and Environmental Microbiology. 80, 22, p. 7021-7027 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain

Guglielmetti, S., Zanoni, I., Balzaretti, S., Miriani, M., Taverniti, V., de Noni, I., Presti, I., Stuknyte, M., Scarafoni, A., Arioli, S., Iametti, S., Bonomi, F., Mora, D., Karp, M. & Granucci, F., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5170-5177 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage

Akimova, A. V., Grin, M. A., Golovina, G. V., Kokrashvili, T. A., Vinogradov, A. M., Mironov, A. F., Rychkov, G. N., Shtil, A. A., Kuzmin, V. A. & Durandin, N. A., 2014, In : DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 454, 1, p. 17-20 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel in vitro cardiovascular constructs composed of vascular-like networks and cardiomyocytes

Vuorenpää, H., Ikonen, L., Kujala, K., Huttala, O., Sarkanen, J. R., Ylikomi, T., Aalto-Setälä, K. & Heinonen, T., 2014, In : IN VITRO CELLULAR AND DEVELOPMENTAL BIOLOGY: ANIMAL. 50, 4, p. 275-286 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Optimal management of metastatic castration-resistant prostate cancer: Highlights from a European Expert Consensus Panel

Fitzpatrick, J. M., Bellmunt, J., Fizazi, K., Heidenreich, A., Sternberg, C. N., Tombal, B., Alcaraz, A., Bahl, A., Bracarda, S., Di Lorenzo, G., Efstathiou, E., Finn, S. P., Fosså, S., Gillessen, S., Kellokumpu-Lehtinen, P. L., Lecouvet, F. E., Oudard, S., De Reijke, T. M., Robson, C. N., De Santis, M., Seruga, B. & De Wit, R., 2014, In : EUROPEAN JOURNAL OF CANCER. 50, 9, p. 1617-1627 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer risk and nonsteroidal antiinflammatory drug use in the Finnish prostate cancer screening trial.

Veitonmäki, T., Murtola, T. J., Määttänen, L., Taari, K., Stenman, U. H., Tammela, T. L. & Auvinen, A., 2014, In : British Journal of Cancer. 111, 7, p. 1421-1431 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers

Hakala, T., Sand, J., Kellokumpu-Lehtinen, P. L., Huhtala, H., Leinonen, R. & Kholová, I., 2014, In : European Journal of Clinical Investigation. 44, 9, p. 825-832 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Relevance of different prior knowledge sources for inferring gene interaction networks

Olsen, C., Bontempi, G., Emmert-Streib, F., Quackenbush, J. & Haibe-Kains, B., 2014, In : Frontiers in Genetics. 5, JUN, Article 177.

Research output: Contribution to journalArticleScientificpeer-review

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast

Emmert-Streib, F., Zhang, S. D. & Hamilton, P., 2014, In : Genomics Data. 2, p. 37-39 3 p.

Research output: Contribution to journalArticleScientificpeer-review

Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing

Pinon, P., Pärssinen, J., Vazquez, P., Bachmann, M., Rahikainen, R., Jacquier, M. C., Azizi, L., Määttä, J. A., Bastmeyer, M., Hytönen, V. P. & Wehrle-Haller, B., 2014, In : Journal of Cell Biology. 205, 2, p. 265-281 17 p.

Research output: Contribution to journalArticleScientificpeer-review

TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75

Guglielmetti, S., Balzaretti, S., Taverniti, V., Miriani, M., Milani, C., Scarafoni, A., Corona, S., Ciranna, A., Arioli, S., Santala, V., Iametti, S., Bonomi, F., Ventura, M., Mora, D. & Karp, M., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5161-5169 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks

Emmert-Streib, F., Simoes, R. D. M., Mullan, P., Haibe-Kains, B. & Dehmer, M., 2014, In : Frontiers in Genetics. 5, FEB, Article 15.

Research output: Contribution to journalArticleScientificpeer-review

Untangling statistical and biological models to understand network inference: The need for a genomics network ontology

Emmert-Streib, F., Dehmer, M. & Haibe-Kains, B., 2014, In : Frontiers in Genetics. 5, AUG, article 229.

Research output: Contribution to journalArticleScientificpeer-review

Large-scale evaluation of molecular descriptors by means of clustering

Dehmer, M., Emmert-Streib, F. & Tripathi, S., 31 Dec 2013, In : PLoS ONE. 8, 12, e83956.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS

Häkkinen, M. R., Roine, A., Auriola, S., Tuokko, A., Veskimäe, E., Keinänen, T. A., Lehtimäki, T., Oksala, N. & Vepsäläinen, J., 15 Dec 2013, In : JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 941, p. 81-89 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Netmes: Assessing gene network inference algorithms by network-based measures

Altay, G., Kurt, Z., Dehmer, M. & Emmert-Streib, F., 7 Dec 2013, In : Evolutionary Bioinformatics. 10

Research output: Contribution to journalArticleScientificpeer-review

The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase

Anantharajan, J., Koski, M. K., Kursula, P., Hieta, R., Bergmann, U., Myllyharju, J. & Wierenga, R. K., 3 Dec 2013, In : Structure. 21, 12, p. 2107-2118 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS)

Oksala, N., Pärssinen, J., Seppälä, I., Raitoharju, E., Ivana, K., Hernesniemi, J., Lyytikäinen, L. P., Levula, M., Mäkelä, K. M., Sioris, T., Kähönen, M., Laaksonen, R., Hytönen, V. & Lehtimäki, T., Dec 2013, In : Circulation: Cardiovascular Genetics. 6, 6, p. 579-587 9 p.

Research output: Contribution to journalArticleScientificpeer-review

MicroRNAs in the atherosclerotic plaque

Raitoharju, E., Oksala, N. & Lehtimäki, T., Dec 2013, In : Clinical Chemistry. 59, 12, p. 1708-1721 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

The diverse role of miR-31 in regulating cancer associated phenotypes

Laurila, E. M. & Kallioniemi, A., Dec 2013, In : Genes Chromosomes and Cancer. 52, 12, p. 1103-1113 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Membrane permeation induced by aggregates of human islet amyloid polypeptides

Poojari, C., Xiao, D., Batista, V. S. & Strodel, B., 19 Nov 2013, In : Biophysical Journal. 105, 10, p. 2323-2332 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Chk1 targeting reactivates PP2A tumor suppressor activity in cancer cells

Khanna, A., Kauko, O., Böckelman, C., Laine, A., Schreck, I., Partanen, J. I., Szwajda, A., Bormann, S., Bilgen, T., Helenius, M., Pokharel, Y. R., Pimanda, J., Russel, M. R., Haglund, C., Cole, K. A., Klefström, J., Aittokallio, T., Weiss, C., Ristimäki, A., Visakorpi, T. & Westermarck, J., 15 Nov 2013, In : Cancer Research. 73, 22, p. 6757-6769 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations

Poojari, C. & Strodel, B., 7 Nov 2013, In : PLoS ONE. 8, 11, e78399.

Research output: Contribution to journalArticleScientificpeer-review

Bi-weekly paclitaxel and capecitabine as a second- Or third-line treatment for advanced breast cancer: A pilot study

Kellokumpu-Lehtinen, P. L., Tuunanen, T., Kautio, A. L., Lehtinen, I. & Tanner, M., Nov 2013, In : Anticancer Research. 33, 11, p. 4941-4945 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Zebavidin - An Avidin-Like Protein from Zebrafish

Taskinen, B., Zmurko, J., Ojanen, M., Kukkurainen, S., Parthiban, M., Määttä, J. A. E., Leppiniemi, J., Jänis, J., Parikka, M., Turpeinen, H., Rämet, M., Pesu, M., Johnson, M. S., Kulomaa, M. S., Airenne, T. T. & Hytönen, V. P., 24 Oct 2013, In : PLoS ONE. 8, 10, e77207.

Research output: Contribution to journalArticleScientificpeer-review

Reversible biofunctionalization of surfaces with a switchable mutant of avidin

Pollheimer, P., Taskinen, B., Scherfler, A., Gusenkov, S., Creus, M., Wiesauer, P., Zauner, D., Schöfberger, W., Schwarzinger, C., Ebner, A., Tampé, R., Stutz, H., Hytönen, V. P. & Gruber, H. J., 16 Oct 2013, In : Bioconjugate Chemistry. 24, 10, p. 1656-1668 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Exogenously added BMP-6, BMP-7 and VEGF may not enhance the osteogenic differentiation of human adipose stem cells

Kyllönen, L., Haimi, S., Säkkinen, J., Kuokkanen, H., Mannerström, B., Sándor, G. K. B. & Miettinen, S., Oct 2013, In : GROWTH FACTORS. 31, 5, p. 141-153 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Fallout from the Chernobyl accident and overall cancer incidence in Finland

Kurttio, P., Seppä, K., Pasanen, K., Patama, T., Auvinen, A., Pukkala, E., Heinävaara, S., Arvela, H. & Hakulinen, T., Oct 2013, In : CANCER EPIDEMIOLOGY. 37, 5, p. 585-592 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Fine mapping of 11q13.5 identifies regions associated with prostate cancer and prostate cancer death

Nurminen, R., Lehtonen, R., Auvinen, A., Tammela, T. L. J., Wahlfors, T. & Schleutker, J., Oct 2013, In : EUROPEAN JOURNAL OF CANCER. 49, 15, p. 3335-3343 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: The atheroremo consortium

Kleber, M. E., Seppälä, I., Pilz, S., Hoffmann, M. M., Tomaschitz, A., Oksala, N., Raitoharju, E., Lyytikäinen, L. P., Mäkelä, K. M., Laaksonen, R., Kähönen, M., Raitakari, O. T., Huang, J., Kienreich, K., Fahrleitner-Pammer, A., Drechsler, C., Krane, V., Boehm, B. O., Koenig, W., Wanner, C., Lehtimäki, T., März, W. & Meinitzer, A., Oct 2013, In : Circulation: Cardiovascular Genetics. 6, 5, p. 505-513 9 p.

Research output: Contribution to journalArticleScientificpeer-review

BMP4 inhibits the proliferation of breast cancer cells and induces an MMP-dependent migratory phenotype in MDA-MB-231 cells in 3D environment

Ampuja, M., Jokimäki, R., Juuti-Uusitalo, K., Rodriguez-Martinez, A., Alarmo, E. L. & Kallioniemi, A., 22 Sep 2013, In : BMC Cancer. 13, 429.

Research output: Contribution to journalArticleScientificpeer-review

The nucleolus as a stress response organelle

Lindström, M. S. & Latonen, L., 1 Sep 2013, Proteins of the Nucleolus: Regulation, Translocation, & Biomedical Functions. Springer Netherlands, Vol. 9789400758186. p. 251-273 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation

Högnäs, G., Hämälistö, S., Rilla, K., Laine, J. O., Vilkki, V., Murumägi, A., Edgren, H., Kallioniemi, O. & Ivaska, J., Sep 2013, In : Carcinogenesis. 34, 9, p. 2000-2009 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer: A preclinical study on the dunning R3327-AT2 rat tumor model

Bozzini, G., Colin, P., Betrouni, N., Maurage, C. A., Leroy, X., Simonin, S., Martin-Schmitt, C., Villers, A. & Mordon, S., Sep 2013, In : PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 10, 3, p. 296-303 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007

Rahu, K., Hakulinen, T., Smailyte, G., Stengrevics, A., Auvinen, A., Inskip, P. D., Boice, J. D. & Rahu, M., Sep 2013, In : EUROPEAN JOURNAL OF CANCER. 49, 13, p. 2926-2933 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Somatic alterations contributing to metastasis of a castration-resistant prostate cancer

Nickerson, M. L., Im, K. M., Misner, K. J., Tan, W., Lou, H., Gold, B., Wells, D. W., Bravo, H. C., Fredrikson, K. M., Harkins, T. T., Milos, P., Zbar, B., Linehan, W. M., Yeager, M., Andresson, T., Dean, M. & Bova, G. S., Sep 2013, In : HUMAN MUTATION. 34, 9, p. 1231-1241 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner

Dixit, D., Ghildiyal, R., Anto, N. P., Ghosh, S., Sharma, V. & Sen, E., 19 Aug 2013, In : Cancer Letters. 336, 2, p. 347-358 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Mechanisms of acceleration and retardation of water dynamics by ions

Stirnemann, G., Wernersson, E., Jungwirth, P. & Laage, D., 14 Aug 2013, In : Journal of the American Chemical Society. 135, 32, p. 11824-11831 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens

Chen, J., Xi, J., Tian, Y., Bova, G. S. & Zhang, H., Aug 2013, In : Proteomics. 13, 15, p. 2268-2277 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Stress Proteins and Heat Shock Proteins: Role in Muscle Building and Sports Nutrition

Venojärvi, M., Oksala, N., Kinnunen, S. & Atalay, M., Aug 2013, Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength. Elsevier Inc., p. 229-235 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer

Loi, S., Michiels, S., Lambrechts, D., Fumagalli, D., Claes, B., Kellokumpu-Lehtinen, P. L., Bono, P., Kataja, V., Piccart, M. J., Joensuu, H. & Sotiriou, C., 3 Jul 2013, In : JOURNAL OF THE NATIONAL CANCER INSTITUTE. 105, 13, p. 960-967 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering

Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 1 Jul 2013, In : Journal of Membrane Science. 438, p. 29-37 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Genetic markers associated with early cancer-specific mortality following prostatectomy

Liu, W., Xie, C. C., Thomas, C. Y., Kim, S. T., Lindberg, J., Egevad, L., Wang, Z., Zhang, Z., Sun, J., Sun, J., Koty, P. P., Kader, A. K., Cramer, S. D., Bova, G. S., Zheng, S. L., Grönberg, H., Isaacs, W. B. & Xu, J., 1 Jul 2013, In : Cancer. 119, 13, p. 2405-2412 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men

Kosola, J., Vaara, J. P., Ahotupa, M., Kyröläinen, H., Santtila, M., Oksala, N., Atalay, M. & Vasankari, T., Jul 2013, In : METABOLISM: CLINICAL AND EXPERIMENTAL. 62, 7, p. 992-999 8 p.

Research output: Contribution to journalArticleScientificpeer-review

The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins

Leppiniemi, J., Meir, A., Kahkonen, N., Kukkurainen, S., Maatta, J. A., Ojanen, M., Janis, J., Kulomaa, M. S., Livnah, O. & Hytonen, V. P., Jul 2013, In : PROTEIN SCIENCE. 22, 7, p. 980-994 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Non-coding RNAs in DNA damage and repair

Sharma, V. & Misteli, T., 27 Jun 2013, In : FEBS Letters. 587, 13, p. 1832-1839 8 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks

Kiiski, H., Äänismaa, R., Tenhunen, J., Hagman, S., Ylä-Outinen, L., Aho, A., Yli-Hankala, A., Bendel, S., Skottman, H. & Narkilahti, S., 15 Jun 2013, In : Biology Open. 2, 6, p. 605-612 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Movement of NH3 through the human urea transporter B: A new gas channel

Ryan Geyer, R., Musa-Aziz, R., Enkavi, G., Mahinthichaichan, P., Tajkhorshid, E. & Boron, W. F., 15 Jun 2013, In : AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY. 304, 12, p. 1447-1457 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Endovenous laser treatment of the great saphenous vein: Measurement of the pullback speed of the fiber by magnetic tracking

Mordon, S. R., Vuylsteke, M. E., Mahieu, P. & Betrouni, N., Jun 2013, In : IRBM. 34, 3, p. 252-256 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Weekly paclitaxel-An effective treatment for advanced breast cancer

Kellokumpu-Lehtinen, P., Tuunanen, T., Asola, R., Elomaa, L., Heikkinen, M., Kokko, R., Järvenpää, R., Lehtinen, I., Maiche, A., Kaleva-Kerola, J., Huusko, M., Möykkynen, K. & Ala-Luhtala, T., Jun 2013, In : Anticancer Research. 33, 6, p. 2623-2628 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer mortality in the finnish randomized screening trial

Kilpeläinen, T. P., Tammela, T. L., Malila, N., Hakama, M., Santti, H., Määttänen, L., Stenman, U. H., Kujala, P. & Auvinen, A., 15 May 2013, In : JOURNAL OF THE NATIONAL CANCER INSTITUTE. 105, 10, p. 719-725 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

Matos Simoes, R. D., Dehmer, M. & Emmert-Streib, F., 11 May 2013, In : BMC Genomics. 14, 1, 324.

Research output: Contribution to journalArticleScientificpeer-review

Overview of Public Cancer Databases, Resources, and Visualization Tools

Emmert-Streib, F., De Matos Simoes, R., Tripathi, S. & Dehmer, M., 8 Apr 2013, Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH, Vol. 3. p. 27-40 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data

Emmert-Streib, F. (ed.) & Dehmer, M. (ed.), 8 Apr 2013, Wiley-VCH. 292 p.

Research output: Book/ReportAnthologyScientificpeer-review

Ensuring the statistical soundness of competitive gene set approaches: Gene filtering and genome-scale coverage are essential

Tripathi, S., Glazko, G. V. & Emmert-Streib, F., Apr 2013, In : Nucleic Acids Research. 41, 7

Research output: Contribution to journalArticleScientificpeer-review

Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis

Simpson, C. L., Cropp, C. D., Wahlfors, T., George, A., Jones, M. S., Harper, U., Ponciano-Jackson, D., Tammela, T., Schleutker, J. & Bailey-Wilson, J. E., Apr 2013, In : EUROPEAN JOURNAL OF HUMAN GENETICS. 21, 4, p. 437-443 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array

Eeles, R. A., Olama, A. A. A., Benlloch, S., Saunders, E. J., Leongamornlert, D. A., Tymrakiewicz, M., Ghoussaini, M., Luccarini, C., Dennis, J., Jugurnauth-Little, S., Dadaev, T., Neal, D. E., Hamdy, F. C., Donovan, J. L., Muir, K., Giles, G. G., Severi, G., Wiklund, F., Gronberg, H., Haiman, C. A., Schumacher, F., Henderson, B. E., Le Marchand, L., Lindstrom, S., Kraft, P., Hunter, D. J., Gapstur, S., Chanock, S. J., Berndt, S. I., Albanes, D., Andriole, G., Schleutker, J., Weischer, M., Canzian, F., Riboli, E., Key, T. J., Travis, R. C., Campa, D., Ingles, S. A., John, E. M., Hayes, R. B., Pharoah, P. D. P., Pashayan, N., Khaw, K. T., Stanford, J. L., Ostrander, E. A., Signorello, L. B., Thibodeau, S. N., Schaid, D., Maier, C., Vogel, W., Kibel, A. S., Cybulski, C., Lubinski, J., Cannon-Albright, L., Brenner, H., Park, J. Y., Kaneva, R., Batra, J., Spurdle, A. B., Clements, J. A., Teixeira, M. R., Dicks, E., Lee, A., Dunning, A. M., Baynes, C., Conroy, D., Maranian, M. J., Ahmed, S., Govindasami, K., Guy, M., Wilkinson, R. A., Sawyer, E. J., Morgan, A., Dearnaley, D. P., Horwich, A., Huddart, R. A., Khoo, V. S., Parker, C. C., Van As, N. J., Woodhouse, C. J., Thompson, A., Dudderidge, T., Ogden, C., Cooper, C. S., Lophatananon, A., Cox, A., Southey, M. C., Hopper, J. L., English, D. R., Aly, M., Adolfsson, J., Xu, J., Zheng, S. L., Yeager, M., Kaaks, R., Diver, W. R., Gaudet, M. M., Stern, M. C., Corral, R., Joshi, A. D., Shahabi, A., Wahlfors, T., Tammela, T. L. J., Auvinen, A., Virtamo, J., Klarskov, P., Nordestgaard, B. G., Røder, M. A., Nielsen, S. F., Bojesen, S. E., Siddiq, A., Fitzgerald, L. M., Kolb, S., Kwon, E. M., Karyadi, D. M., Blot, W. J., Zheng, W., Cai, Q., McDonnell, S. K., Rinckleb, A. E., Drake, B., Colditz, G., Wokolorczyk, D., Stephenson, R. A., Teerlink, C., Muller, H., Rothenbacher, D., Sellers, T. A., Lin, H. Y., Slavov, C., Mitev, V., Lose, F., Srinivasan, S., Maia, S., Paulo, P., Lange, E., Cooney, K. A., Antoniou, A. C., Vincent, D., Bacot, F., Tessier, D. C., Kote-Jarai, Z. & Easton, D. F., Apr 2013, In : Nature Genetics. 45, 4, p. 385-391 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Obesity and physical inactivity are related to impaired physical health of breast cancer survivors

Elme, A., Utriainen, M., Kellokumpu-Lehtinen, P., Palva, T., Luoto, R., Nikander, R., Huovinen, R., Kautiainen, H., Järvenpää, S., Penttinen, H. M., Vehmanen, L., Jääskeläinen, A. S., Ruohola, J., Blomqvist, C. & Saarto, T., Apr 2013, In : Anticancer Research. 33, 4, p. 1595-1602 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms

Tossavainen, H., Helppolainen, S. H., Määttä, J. A. E., Pihlajamaa, T., Hytönen, V. P., Kulomaa, M. S. & Permi, P., Apr 2013, In : BIOMOLECULAR NMR ASSIGNMENTS. 7, 1, p. 35-38 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model

Elamin, E., Masclee, A., Juuti-Uusitalo, K., van IJzendoorn, S., Troost, F., Pieters, H. J., Dekker, J. & Jonkers, D., 19 Mar 2013, In : PLoS ONE. 8, 3, e58561.

Research output: Contribution to journalArticleScientificpeer-review

Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis

Bruchmann, A., Roller, C., Walther, T. V., Schäfer, G., Lehmusvaara, S., Visakorpi, T., Klocker, H., Cato, A. C. B. & Maddalo, D., 1 Mar 2013, In : BMC Cancer. 13, 96.

Research output: Contribution to journalArticleScientificpeer-review

Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level

Veitonmäki, T., Tammela, T. L. J., Auvinen, A. & Murtola, T. J., Mar 2013, In : EUROPEAN JOURNAL OF CANCER. 49, 4, p. 938-945 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Structural Properties and Complexity of a New Network Class: Collatz Step Graphs

Emmert-Streib, F., 19 Feb 2013, In : PLoS ONE. 8, 2, e56461.

Research output: Contribution to journalArticleScientificpeer-review

An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning

Betrouni, N., Nevoux, P., Leroux, B., Colin, P., Puech, P. & Mordon, S., Feb 2013, In : Medical Physics. 40, 2, 022701.

Research output: Contribution to journalArticleScientificpeer-review

How the amyloid-β peptide and membranes affect each other: An extensive simulation study

Poojari, C., Kukol, A. & Strodel, B., Feb 2013, In : Biochimica et Biophysica Acta: Biomembranes. 1828, 2, p. 327-339 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Image-guided laser therapies for prostate cancer

Betrouni, N., Colin, P., Bozzini, G. & Mordon, S., Feb 2013, In : IRBM. 34, 1, p. 28-32 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Visualizing functional motions of membrane transporters with molecular dynamics simulations

Shaikh, S. A., Li, J., Enkavi, G., Wen, P. C., Huang, Z. & Tajkhorshid, E., 29 Jan 2013, In : Biochemistry. 52, 4, p. 569-587 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Gene ontology annotations and resources

Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., Bridges, S., Burgess, S., Buza, T., McCarthy, F., Peddinti, D., Pillai, L., Carbon, S., Dietze, H., Ireland, A., Lewis, S. E., Mungall, C. J., Gaudet, P., Chisholm, R. L., Fey, P., Kibbe, W. A., Basu, S., Siegele, D. A., McIntosh, B. K., Renfro, D. P., Zweifel, A. E., Hu, J. C., Brown, N. H., Tweedie, S., Alam-Faruque, Y., Apweiler, R., Auchinchloss, A., Axelsen, K., Bely, B., Blatter, M. C., Bonilla, C., Bougueleret, L., Boutet, E., Breuza, L., Bridge, A., Chan, W. M., Chavali, G., Coudert, E., Dimmer, E., Estreicher, A., Famiglietti, L., Feuermann, M., Gos, A., Gruaz-Gumowski, N., Hieta, R., Hinz, U., Hulo, C., Huntley, R., James, J., Jungo, F., Keller, G., Laiho, K., Legge, D., Lemercier, P., Lieberherr, D., Magrane, M., Martin, M. J., Masson, P., Mutowo-Muellenet, P., O'Donovan, C., Pedruzzi, I., Pichler, K., Poggioli, D., Porras Millan, P., Poux, S., Rivoire, C., Roechert, B., Sawford, T., Schneider, M., Stutz, A., Sundaram, S., Tognolli, M., Xenarios, I., Foulger, R., Lomax, J., Roncaglia, P., Khodiyar, V. K., Lovering, R. C., Talmud, P. J., Chibucos, M., Gwinn Giglio, M., Chang, H. Y., Hunter, S., McAnulla, C., Mitchell, A., Sangrador, A., Stephan, R., Harris, M. A., Oliver, S. G., Rutherford, K., Wood, V., Bahler, J., Lock, A., Kersey, P. J., McDowall, M. D., Staines, D. M., Dwinell, M., Shimoyama, M., Laulederkind, S., Hayman, T., Wang, S. J., Petri, V., Lowry, T., D'Eustachio, P., Matthews, L., Balakrishnan, R., Binkley, G., Cherry, J. M., Costanzo, M. C., Dwight, S. S., Engel, S. R., Fisk, D. G., Hitz, B. C., Hong, E. L., Karra, K., Miyasato, S. R., Nash, R. S., Park, J., Skrzypek, M. S., Weng, S., Wong, E. D., Berardini, T. Z., Li, D., Huala, E., Mi, H., Thomas, P. D., Chan, J., Kishore, R., Sternberg, P., Van Auken, K., Howe, D. & Westerfield, M., 1 Jan 2013, In : Nucleic Acids Research. 41, D1

Research output: Contribution to journalArticleScientificpeer-review

Update on activities at the Universal Protein Resource (UniProt) in 2013

Apweiler, R., Martin, M. J., O'Donovan, C., Magrane, M., Alam-Faruque, Y., Alpi, E., Antunes, R., Arganiska, J., Casanova, E. B., Bely, B., Bingley, M., Bonilla, C., Britto, R., Bursteinas, B., Chan, W. M., Chavali, G., Cibrian-Uhalte, E., Da Silva, A., De Giorgi, M., Dimmer, E., Fazzini, F., Gane, P., Fedotov, A., Castro, L. G., Garmiri, P., Hatton-Ellis, E., Hieta, R., Huntley, R., Jacobsen, J., Jones, R., Legge, D., Liu, W., Luo, J., MacDougall, A., Mutowo, P., Nightingale, A., Orchard, S., Patient, S., Pichler, K., Poggioli, D., Pundir, S., Pureza, L., Qi, G., Rosanoff, S., Sawford, T., Sehra, H., Turner, E., Volynkin, V., Wardell, T., Watkins, X., Zellner, H., Corbett, M., Donnelly, M., Van Rensburg, P., Goujon, M., McWilliam, H., Lopez, R., Xenarios, I., Bougueleret, L., Bridge, A., Poux, S., Redaschi, N., Auchincloss, A., Axelsen, K., Bansal, P., Baratin, D., Binz, P. A., Blatter, M. C., Boeckmann, B., Bolleman, J., Boutet, E., Breuza, L., De Castro, E., Cerutti, L., Coudert, E., Cuche, B., Doche, M., Dornevil, D., Duvaud, S., Estreicher, A., Famiglietti, L., Feuermann, M., Gasteiger, E., Gehant, S., Gerritsen, V., Gos, A., Gruaz-Gumowski, N., Hinz, U., Hulo, C., James, J., Jungo, F., Keller, G., Lara, V., Lemercier, P., Lew, J., Lieberherr, D., Martin, X., Masson, P., Morgat, A., Neto, T., Paesano, S., Pedruzzi, I., Pilbout, S., Pozzato, M., Pruess, M., Rivoire, C., Roechert, B., Schneider, M., Sigrist, C., Sonesson, K., Staehli, S., Stutz, A., Sundaram, S., Tognolli, M., Verbregue, L., Veuthey, A. L., Zerara, M., Wu, C. H., Arighi, C. N., Arminski, L., Chen, C., Chen, Y., Huang, H., Kukreja, A., Laiho, K., McGarvey, P., Natale, D. A., Natarajan, T. G., Roberts, N. V., Suzek, B. E., Vinayaka, C. R., Wang, Q., Wang, Y., Yeh, L. S., Yerramalla, M. S. & Zhang, J., 1 Jan 2013, In : Nucleic Acids Research. 41, D1

Research output: Contribution to journalArticleScientificpeer-review

A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease

Al Olama, A. A., Kote-Jarai, Z., Schumacher, F. R., Wiklund, F., Berndt, S. I., Benlloch, S., Giles, G. G., Severi, G., Neal, D. E., Hamdy, F. C., Donovan, J. L., Hunter, D. J., Henderson, B. E., Thun, M. J., Gaziano, M., Giovannucci, E. L., Siddiq, A., Travis, R. C., Cox, D. G., Canzian, F., Riboli, E., Key, T. J., Andriole, G., Albanes, D., Hayes, R. B., Schleutker, J., Auvinen, A., Tammela, T. L. J., Weischer, M., Stanford, J. L., Ostrander, E. A., Cybulski, C., Lubinski, J., Thibodeau, S. N., Schaid, D. J., Sorensen, K. D., Batra, J., Clements, J. A., Chambers, S., Aitken, J., Gardiner, R. A., Maier, C., Vogel, W., Dörk, T., Brenner, H., Habuchi, T., Ingles, S., John, E. M., Dickinson, J. L., Cannon-Albright, L., Teixeira, M. R., Kaneva, R., Zhang, H. W., Lu, Y. J., Park, J. Y., Cooney, K. A., Muir, K. R., Leongamornlert, D. A., Saunders, E., Tymrakiewicz, M., Mahmud, N., Guy, M., Govindasami, K., O'Brien, L. T., Wilkinson, R. A., Hall, A. L., Sawyer, E. J., Dadaev, T., Morrison, J., Dearnaley, D. P., Horwich, A., Huddart, R. A., Khoo, V. S., Parker, C. C., Van As, N., Woodhouse, C. J., Thompson, A., Dudderidge, T., Ogden, C., Cooper, C. S., Lophatonanon, A., Southey, M. C., Hopper, J. L., English, D., Virtamo, J., Marchand, L. L., Campa, D., Kaaks, R., Lindstrom, S., Diver, W. R., Gapstur, S., Yeager, M., Cox, A., Stern, M. C., Corral, R., Aly, M., Isaacs, W., Adolfsson, J., Xu, J., Zheng, S. L., Wahlfors, T., Taari, K., Kujala, P., Klarskov, P., Nordestgaard, B. G., Røder, M. A., Frikke-Schmidt, R., Bojesen, S. E., FitzGerald, L. M., Kolb, S., Kwon, E. M., Karyadi, D. M., Orntoft, T. F., Borre, M., Rinckleb, A., Luedeke, M., Herkommer, K., Meyer, A., Serth, J. R., Marthick, J. R., Patterson, B., Wokolorczyk, D., Spurdle, A., Lose, F., McDonnell, S. K., Joshi, A. D., Shahabi, A., Pinto, P., Santos, J., Ray, A., Sellers, T. A., Lin, H. Y., Stephenson, R. A., Teerlink, C., Muller, H., Rothenbacher, D., Tsuchiya, N., Narita, S., Cao, G. W., Slavov, C., Mitev, V., Chanock, S., Gronberg, H., Haiman, C. A., Kraft, P., Easton, D. F. & Eeles, R. A., Jan 2013, In : HUMAN MOLECULAR GENETICS. 22, 2, p. 408-415 8 p., dds425.

Research output: Contribution to journalArticleScientificpeer-review

HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG)

Xu, J., Lange, E. M., Lu, L., Zheng, S. L., Wang, Z., Thibodeau, S. N., Cannon-Albright, L. A., Teerlink, C. C., Camp, N. J., Johnson, A. M., Zuhlke, K. A., Stanford, J. L., Ostrander, E. A., Wiley, K. E., Isaacs, S. D., Walsh, P. C., Maier, C., Luedeke, M., Vogel, W., Schleutker, J., Wahlfors, T., Tammela, T., Schaid, D., McDonnell, S. K., Derycke, M. S., Cancel-Tassin, G., Cussenot, O., Wiklund, F., Grönberg, H., Eeles, R., Easton, D., Kote-Jarai, Z., Whittemore, A. S., Hsieh, C. L., Giles, G. G., Hopper, J. L., Severi, G., Catalona, W. J., Mandal, D., Ledet, E., Foulkes, W. D., Hamel, N., Mahle, L., Moller, P., Powell, I., Bailey-Wilson, J. E., Carpten, J. D., Seminara, D., Cooney, K. A. & Isaacs, W. B., Jan 2013, In : HUMAN GENETICS. 132, 1, p. 5-14 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration

Rauhala, H. E., Teppo, S., Niemelä, S. & Kallioniemi, A., Jan 2013, In : Anticancer Research. 33, 1, p. 45-52 8 p.

Research output: Contribution to journalArticleScientificpeer-review

2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture

Ikonen, L., Kerkelä, E., Metselaar, G., Stuart, M. C. A., De Jong, M. R. & Aalto-Setälä, K., 2013, In : BioMed Research International. 2013, 285678.

Research output: Contribution to journalArticleScientificpeer-review

B-cell lymphoma gene regulatory networks: Biological consistency among inference methods

Simoes, R. D. M., Dehmer, M. & Emmert-Streib, F., 2013, In : Frontiers in Genetics. 4, DEC, 00281.

Research output: Contribution to journalArticleScientificpeer-review

CIP2A expression and prognostic role in patients with esophageal adenocarcinoma

Rantanen, T., Kauttu, T., Åkerla, J., Honkanen, T., Krogerus, L., Salo, J., Paavonen, T. & Oksala, N., 2013, In : MEDICAL ONCOLOGY. 30, 3, 684.

Research output: Contribution to journalArticleScientificpeer-review

Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines

Toivonen, S., Ojala, M., Hyysalo, A., Ilmarinen, T., Rajala, K., Pekkanen-Mattila, M., Äänismaa, R., Lundin, K., Palgi, J., Weltner, J., Trokovic, R., Silvennoinen, O., Skottman, H., Narkilahti, S., Aalto-Setälä, K. & Otonkoski, T., 2013, In : Stem Cells Translational Medicine. 2, 2, p. 83-93 11 p.

Research output: Contribution to journalArticleScientificpeer-review

DBComposer: An R package for integrative analysis and management of gene expression microarray data

Kong, L., Aho, K. L., Granberg, K., Roos, C. & Autio, R., 2013, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. p. 92-93 2 p. 6735944

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells

Patrikoski, M., Juntunen, M., Boucher, S., Campbell, A., Vemuri, M. C., Mannerström, B. & Miettinen, S., 2013, In : STEM CELL RESEARCH & THERAPY. 4, 2, 27.

Research output: Contribution to journalArticleScientificpeer-review

Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro

Kyllönen, L., Haimi, S., Mannerström, B., Huhtala, H., Rajala, K. M., Skottman, H., Sándor, G. K. & Miettinen, S., 2013, In : STEM CELL RESEARCH & THERAPY. 4, 1, 17.

Research output: Contribution to journalArticleScientificpeer-review

Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens

Chen, J., Eshghi, S. T., Bova, G. S., Li, Q. K., Li, X. & Zhang, H., 2013, In : CLINICAL PROTEOMICS. 10, 1, 18.

Research output: Contribution to journalArticleScientificpeer-review

Genetic and QTL analyses of yield and a set of physiological traits in pepper

Alimi, N. A., Bink, M. C. A. M., Dieleman, J. A., Nicolaï, M., Wubs, M., Heuvelink, E., Magan, J., Voorrips, R. E., Jansen, J., Rodrigues, P. C., van der Heijden, G. W. A. M., Vercauteren, A., Vuylsteke, M., Song, Y., Glasbey, C., Barocsi, A., Lefebvre, V., Palloix, A. & van Eeuwijk, F. A., 2013, In : EUPHYTICA. 190, 2, p. 181-201 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications

Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 2013, In : Acta Biomaterialia. 9, 5, p. 6450-6458 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone

Ylilauri, M., Mattila, E., Nurminen, E. M., Käpylä, J., Niinivehmas, S. P., Määttä, J. A., Pentikäinen, U., Ivaska, J. & Pentikäinen, O. T., 2013, In : Biochimica et biophysica acta: proteins and proteomics. 1834, 10, p. 1988-1997 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream

Magarkar, A., Stepniewski, M., Karakas, E., Rog, T., Yliperttula, M., Urtti, A. & Bunker, A., 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2. p. 576-578 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India

Jayakrishnan, R., Mathew, A., Uutela, A., Auvinen, A. & Sebastian, P., 2013, In : ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 14, 5, p. 2891-2896 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications

Rodriguez-Canales, J., Hanson, J. C., Hipp, J. D., Balis, U. J., Tangrea, M. A., Emmert-Buck, M. R. & Bova, G. S., 2013, Pancreatic Cancer: Methods and Protocols. HUMANA PRESS INC, Vol. 980. p. 61-120 60 p. (Methods in Molecular Biology; vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Personalized medicine: Has it started yet? A reconstruction of the early history

Emmert-Streib, F., 2013, In : Frontiers in Genetics. 3, JAN, Article 313.

Research output: Contribution to journalArticleScientificpeer-review

Person identification from actions based on Artificial Neural Networks

Iosifidis, A., Tefas, A. & Pitas, I., 2013, IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. p. 7-13 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on dynemes and discriminant learning

Iosifidis, A., Tefas, A. & Pitas, I., 2013, 2013 International Workshop on Biometrics and Forensics, IWBF 2013.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll atomic layer deposition for flexible substrates

Lahtinen, K., Maydannik, P., Kääriäinen, T., Seppänen, T., Cameron, D. C., Johansson, P., Kraft, M. & Kuusipalo, J., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 726-739 14 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Smoking cessation intervention in Rural Kerala, India: Findings of a randomised controlled trial

Jayakrishnan, R., Uutela, A., Mathew, A., Auvinen, A., Mathew, P. S. & Sebastian, P., 2013, In : ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 14, 11, p. 6797-6802 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Undercut edges for robust capillary self-alignment in hybrid microassembly

Liimatainen, V., Sariola, V. & Zhou, Q., 2013, 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. p. 1088-1091 4 p. 6559911

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Wear resistance of nanoparticle coatings on paperboard

Stepien, M., Chinga-Carrasco, G., Saarinen, J. J., Teisala, H., Tuominen, M., Aromaa, M., Haapanen, J., Kuusipalo, J., Mäkelä, J. M. & Toivakka, M., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 821-829 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Standardization of Diagnostic Biomarker Concentrations in Urine: The Hematuria Caveat

Reid, C. N., Stevenson, M., Abogunrin, F., Ruddock, M. W., Emmert-Streib, F., Lamont, J. V. & Williamson, K. E., 31 Dec 2012, In : PLoS ONE. 7, 12, e53354.

Research output: Contribution to journalArticleScientificpeer-review

Aerobic Fitness Does Not Modify the Effect of FTO Variation on Body Composition Traits

Huuskonen, A., Lappalainen, J., Oksala, N., Santtila, M., Häkkinen, K., Kyröläinen, H. & Atalay, M., 17 Dec 2012, In : PLoS ONE. 7, 12, e51635.

Research output: Contribution to journalArticleScientificpeer-review

Cancer incidence among Nordic airline cabin crew

Pukkala, E., Helminen, M., Haldorsen, T., Hammar, N., Kojo, K., Linnersjö, A., Rafnsson, V., Tulinius, H., Tveten, U. & Auvinen, A., 15 Dec 2012, In : International Journal of Cancer. 131, 12, p. 2886-2897 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Harnessing the complexity of gene expression data from cancer: From single gene to structural pathway methods

Emmert-Streib, F., Tripathi, S. & Matos Simoes, R. D., 10 Dec 2012, In : Biology Direct. 7, 44.

Research output: Contribution to journalArticleScientificpeer-review

Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide

Lisitsyna, E. S., Durandin, N. A., Ivanov, A. A., Streltsov, S. A., Susova, O. Y., Shtil, A. A., Zhuze, A. L. & Kuzmin, V. A., Nov 2012, In : MOLECULAR BIOLOGY. 46, 6, p. 823-827 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Culture Conditions Affect Cardiac Differentiation Potential of Human Pluripotent Stem Cells

Ojala, M., Rajala, K., Pekkanen-Mattila, M., Miettinen, M., Huhtala, H. & Aalto-Setälä, K., 31 Oct 2012, In : PLoS ONE. 7, 10, e48659.

Research output: Contribution to journalArticleScientificpeer-review

GFP's Mechanical Intermediate States

Saeger, J., Hytönen, V. P., Klotzsch, E. & Vogel, V., 31 Oct 2012, In : PLoS ONE. 7, 10, e46962.

Research output: Contribution to journalArticleScientificpeer-review

Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations

Jurkiewicz, P., Olzyńska, A., Cwiklik, L., Conte, E., Jungwirth, P., Megli, F. M. & Hof, M., Oct 2012, In : Biochimica et Biophysica Acta: Biomembranes. 1818, 10, p. 2388-2402 15 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Number of screens for overdetection as an indicator of absolute risk of overdiagnosis in prostate cancer screening

Wu, G. H. M., Auvinen, A., Määttänen, L., Tammela, T. L. J., Stenman, U. H., Hakama, M., Yen, A. M. F. & Chen, H. H., 15 Sep 2012, In : International Journal of Cancer. 131, 6, p. 1367-1375 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Sarcopenia during androgen-deprivation therapy for prostate cancer

Smith, M. R., Saad, F., Egerdie, B., Sieber, P. R., Tammela, T. L. J., Ke, C., Leder, B. Z. & Goessl, C., 10 Sep 2012, In : Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 30, 26, p. 3271-3276 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Loss of SUFU function in familial multiple meningioma

Aavikko, M., Li, S. P., Saarinen, S., Alhopuro, P., Kaasinen, E., Morgunova, E., Li, Y., Vesanen, K., Smith, M. J., Evans, D. G. R., Pöyhönen, M., Kiuru, A., Auvinen, A., Aaltonen, L. A., Taipale, J. & Vahteristo, P., 7 Sep 2012, In : AMERICAN JOURNAL OF HUMAN GENETICS. 91, 3, p. 520-526 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Endocrine prevention and treatment of prostate cancer

Tammela, T. L. J., 5 Sep 2012, In : Molecular and Cellular Endocrinology. 360, 1-2, p. 59-67 9 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Cell Model of Catecholaminergic Polymorphic Ventricular Tachycardia Reveals Early and Delayed Afterdepolarizations

Kujala, K., Paavola, J., Lahti, A., Larsson, K., Pekkanen-Mattila, M., Viitasalo, M., Lahtinen, A. M., Toivonen, L., Kontula, K., Swan, H., Laine, M., Silvennoinen, O. & Aalto-Setälä, K., 4 Sep 2012, In : PLoS ONE. 7, 9, e44660.

Research output: Contribution to journalArticleScientificpeer-review

Effectiveness of a 12-month exercise program on physical performance and quality of life of breast cancer survivors

Saarto, T., Penttinen, H. M., Sievänen, H., Kellokumpu-Lehtinen, P. L., Hakamies-Blomqvist, L., Nikander, R., Huovinen, R., Luoto, R., Kautiainen, H., Järvenpää, S., Idman, I., Utriainen, M., Vehmanen, L., Jääskeläinen, A. S., Elme, A., Ruohola, J., Palva, T., Vertio, H., Rautalahti, M., Fogelholm, M., Blomqvist, C. & Luoma, M. L., Sep 2012, In : Anticancer Research. 32, 9, p. 3875-3884 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Effect of exercise on bone structural traits, physical performance and body composition in breast cancer patients - A 12-month RCT

Nikander, R., Sievänen, H., Ojala, K., Kellokumpu-Lehtinen, P. L., Palva, T., Blomqvist, C., Luoto, R. & Saarto, T., Sep 2012, In : Journal of Musculoskeletal and Neuronal Interactions. 12, 3, p. 127-135 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Photodynamic therapy in urology: What can we do now and where are we heading?

Bozzini, G., Colin, P., Betrouni, N., Nevoux, P., Ouzzane, A., Puech, P., Villers, A. & Mordon, S., Sep 2012, In : PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 9, 3, p. 261-273 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Responder analysis of the effects of denosumab on bone mineral density in men receiving androgen deprivation therapy for prostate cancer

Egerdie, R. B., Saad, F., Smith, M. R., Tammela, T. L. J., Heracek, J., Sieber, P., Ke, C., Leder, B., Dansey, R. & Goessl, C., Sep 2012, In : PROSTATE CANCER AND PROSTATIC DISEASES. 15, 3, p. 308-312 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Toxicity in patients receiving adjuvant docetaxel hormonal treatment after radical radiotherapy for intermediate or high-risk prostate cancer: A preplanned safety report of the SPCG-13 trial

Kellokumpu-Lehtinen, P. L., Hjälm-Eriksson, M., Thellenberg-Karlsson, C., Åström, L., Franzen, L., Marttila, T., Seke, M., Taalikka, M. & Ginman, C., Sep 2012, In : PROSTATE CANCER AND PROSTATIC DISEASES. 15, 3, p. 303-307 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer

Liu, W., Lindberg, J., Sui, G., Luo, J., Egevad, L., Li, T., Xie, C., Wan, M., Kim, S. T., Wang, Z., Turner, A. R., Zhang, Z., Feng, J., Yan, Y., Sun, J., Bova, G. S., Ewing, C. M., Yan, G., Gielzak, M., Cramer, S. D., Vessella, R. L., Zheng, S. L., Grönberg, H., Isaacs, W. B. & Xu, J., 30 Aug 2012, In : Oncogene. 31, 35, p. 3939-3948 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Cytokinesis failure due to derailed integrin traffic induces aneuploidy and oncogenic transformation in vitro and in vivo

Högnäs, G., Tuomi, S., Veltel, S., Mattila, E., Murumägi, A., Edgren, H., Kallioniemi, O. & Ivaska, J., 2 Aug 2012, In : Oncogene. 31, 31, p. 3597-3606 10 p.

Research output: Contribution to journalArticleScientificpeer-review

No additional benefit of adding ifosfamide to docetaxel in castration-resistant metastatic prostate cancer

Hervonen, P., Tulijoki, T. & Kellokumpu-Lehtinen, P., Aug 2012, In : Anticancer Research. 32, 8, p. 3305-3310 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis

Inouye, M., Ripatti, S., Kettunen, J., Lyytikäinen, L. P., Oksala, N., Laurila, P. P., Kangas, A. J., Soininen, P., Savolainen, M. J., Viikari, J., Kähönen, M., Perola, M., Salomaa, V., Raitakari, O., Lehtimäki, T., Taskinen, M. R., Järvelin, M. R., Ala-Korpela, M., Palotie, A. & de Bakker, P. I. W., Aug 2012, In : PLOS GENETICS. 8, 8, e1002907.

Research output: Contribution to journalArticleScientificpeer-review

Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis: Evidence from the International Consortium for Prostate Cancer Genetics (ICPCG)

Jin, G., Lu, L., Cooney, K. A., Ray, A. M., Zuhlke, K. A., Lange, E. M., Cannon-Albright, L. A., Camp, N. J., Teerlink, C. C., Fitzgerald, L. M., Stanford, J. L., Wiley, K. E., Isaacs, S. D., Walsh, P. C., Foulkes, W. D., Giles, G. G., Hopper, J. L., Severi, G., Eeles, R., Easton, D., Kote-Jarai, Z., Guy, M., Rinckleb, A., Maier, C., Vogel, W., Cancel-Tassin, G., Egrot, C., Cussenot, O., Thibodeau, S. N., McDonnell, S. K., Schaid, D. J., Wiklund, F., Grönberg, H., Emanuelsson, M., Whittemore, A. S., Oakley-Girvan, I., Hsieh, C. L., Wahlfors, T., Tammela, T., Schleutker, J., Catalona, W. J., Zheng, S. L., Ostrander, E. A., Isaacs, W. B. & Xu, J., Jul 2012, In : HUMAN GENETICS. 131, 7, p. 1095-1103 9 p.

Research output: Contribution to journalArticleScientificpeer-review

The importance of LDL and Cholesterol metabolism for prostate epithelial cell growth

Murtola, T. J., Syvälä, H., Pennanen, P., Bläuer, M., Solakivi, T., Ylikomi, T. & Tammela, T. L. J., 27 Jun 2012, In : PLoS ONE. 7, 6, e39445.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanisms of ion-specific effects on proteins

Rembert, K. B., Paterová, J., Heyda, J., Hilty, C., Jungwirth, P. & Cremer, P. S., 20 Jun 2012, In : Journal of the American Chemical Society. 134, 24, p. 10039-10046 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families

Bailey-Wilson, J. E., Childs, E. J., Cropp, C. D., Schaid, D. J., Xu, J., Camp, N. J., Cannon-Albright, L. A., Farnham, J. M., George, A., Powell, I., Carpten, J. D., Giles, G. G., Hopper, J. L., Severi, G., English, D. R., Foulkes, W. D., Mæhle, L., Møller, P., Eeles, R., Easton, D., Guy, M., Edwards, S., Badzioch, M. D., Whittemore, A. S., Oakley-Girvan, I., Hsieh, C. L., Dimitrov, L., Stanford, J. L., Karyadi, D. M., Deutsch, K., McIntosh, L., Ostrander, E. A., Wiley, K. E., Isaacs, S. D., Walsh, P. C., Thibodeau, S. N., McDonnell, S. K., Hebbring, S., Lange, E. M., Cooney, K. A., Tammela, T. L. J., Schleutker, J., Maier, C., Bochum, S., Hoegel, J., Grönberg, H., Wiklund, F., Emanuelsson, M., Cancel-Tassin, G., Valeri, A., Cussenot, O. & Isaacs, W. B., 19 Jun 2012, In : BMC MEDICAL GENETICS. 13, 46.

Research output: Contribution to journalArticleScientificpeer-review