Covalent immobilization of luminescent oxygen indicators reduces cytotoxicity. / Välimäki, Hannu; Hyvärinen, Tanja; Leivo, Joni; Iftikhar, Haider; Pekkanen-Mattila, Mari; Rajan, Dhanesh Kattipparambil; Verho, Jarmo; Kreutzer, Joose; Ryynänen, Tomi; Pirhonen, Jonatan; Aalto-Setälä, Katriina; Kallio, Pasi; Narkilahti, Susanna; Lekkala, Jukka.

In: BIOMEDICAL MICRODEVICES, Vol. 22, No. 2, 41, 01.06.2020.

Research output: Contribution to journalArticleScientificpeer-review

Paclitaxel, carboplatin and 1,25-D3 inhibit proliferation of ovarian cancer cells in vitro. / Kuittinen, Tea; Rovio, Päivi; Luukkaala, Tiina; Laurila, Marita; Grénman, Seija; Kallioniemi, Anne; Mäenpää, Johanna.

In: Anticancer Research, Vol. 40, No. 6, 01.06.2020, p. 3129-3138.

Research output: Contribution to journalArticleScientificpeer-review

All-Optical Electrophysiology Refines Populations of In Silico Human iPSC-CMs for Drug Evaluation. / Paci, Michelangelo; Passini, Elisa; Klimas, Aleksandra; Severi, Stefano; Hyttinen, Jari; Rodriguez, Blanca; Entcheva, Emilia.

In: Biophysical Journal, Vol. 118, No. 10, 19.05.2020, p. 2596-2611.

Research output: Contribution to journalArticleScientificpeer-review

Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup. / Palma, Cristina S.D.; Kandavalli, Vinodh; Bahrudeen, Mohamed N.M.; Minoia, Marco; Chauhan, Vatsala; Dash, Suchintak; Ribeiro, Andre S.

In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1863, No. 5, 194515, 01.05.2020.

Research output: Contribution to journalArticleScientificpeer-review

High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants. / Vanharanta, Lauri; Peränen, Johan; Pfisterer, Simon G.; Enkavi, Giray; Vattulainen, Ilpo; Ikonen, Elina.

In: Traffic, Vol. 21, No. 5, 01.05.2020, p. 386-397.

Research output: Contribution to journalArticleScientificpeer-review

Salivary cortisol reactivity to psychological stressors in infancy : A meta-analysis. / Puhakka, Ilmari J.A.; Peltola, Mikko J.

In: PSYCHONEUROENDOCRINOLOGY, Vol. 115, 104603, 01.05.2020.

Research output: Contribution to journalReview ArticleScientificpeer-review

Utilizing Gelatinized Starchy Waste from Rice Noodle Factory as Substrate for L(+)-Lactic Acid Production by Amylolytic Lactic Acid Bacterium Enterococcus faecium K-1. / Unban, Kridsada; Khanongnuch, Ramita; Kanpiengjai, Apinun; Shetty, Kalidas; Khanongnuch, Chartchai.

In: Applied Biochemistry and Biotechnology, 05.2020.

Research output: Contribution to journalArticleScientificpeer-review

Evaluation of scaffold microstructure and comparison of cell seeding methods using micro-computed tomography-based tools. / Palmroth, Aleksi; Pitkänen, Sanna; Hannula, Markus; Paakinaho, Kaarlo; Hyttinen, Jari; Miettinen, Susanna; Kellomäki, Minna.

In: Journal of the Royal Society. Interface, Vol. 17, No. 165, 20200102, 01.04.2020.

Research output: Contribution to journalArticleScientificpeer-review

Mixed carbon substrates : a necessary nuisance or a missed opportunity? / Liu, Nian; Santala, Suvi; Stephanopoulos, Gregory.

In: CURRENT OPINION IN BIOTECHNOLOGY, Vol. 62, 01.04.2020, p. 15-21.

Research output: Contribution to journalReview ArticleScientificpeer-review

The effect of start-up on energy recovery and compositional changes in brewery wastewater in bioelectrochemical systems. / Haavisto, Johanna M.; Kokko, Marika E.; Lakaniemi, Aino Maija; Sulonen, Mira L.K.; Puhakka, Jaakko A.

In: BIOELECTROCHEMISTRY, Vol. 132, 107402, 01.04.2020.

Research output: Contribution to journalArticleScientificpeer-review

Utilizing Neurons for Digital Logic Circuits : A Molecular Communications Analysis. / Adonias, Geoflly L.; Yastrebova, Anastasia; Barros, Michael Taynnan; Koucheryavy, Yevgeni; Cleary, Frances; Balasubramaniam, Sasitharan.

In: IEEE Transactions on Nanobioscience, Vol. 19, No. 2, 01.04.2020, p. 224-236.

Research output: Contribution to journalArticleScientificpeer-review

Sequential Collinear Photofragmentation and Atomic Absorption Spectroscopy for Online Laser Monitoring of Triatomic Metal Species. / Viljanen, Jan; Kalmankoski, Kim; Contreras, Victor; Sarin, Jaakko K.; Sorvajärvi, Tapio; Kinnunen, Hanna; Enestam, Sonja; Toivonen, Juha.

In: Sensors (Basel, Switzerland), Vol. 20, No. 2, 533, 18.01.2020.

Research output: Contribution to journalArticleScientificpeer-review

A concise synthesis of carbasugars isolated from Streptomyces lincolnensis. / Holmstedt, Suvi; Candeias, Nuno R.

In: Tetrahedron, 2020.

Research output: Contribution to journalArticleScientificpeer-review

Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films. / Rebelo Calejo, Teresa; Vuorenpää, Hanna; Vuorimaa-Laukkanen, Elina; Kallio, Pasi; Aalto-Setälä, Katriina; Miettinen, Susanna; Skottman, Heli; Kellomäki, Minna; Juuti-Uusitalo, Kati.

In: Acta Biomaterialia, Vol. 101, 2020, p. 327-343.

Research output: Contribution to journalArticleScientificpeer-review

Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor. / Lolicato, Fabio; Juhola, Hanna; Zak, Agata; Postila, Pekka A.; Saukko, Annina; Rissanen, Sami; Enkavi, Giray; Vattulainen, Ilpo; Kepczynski, Mariusz; Róg, Tomasz.

In: ACS Chemical Neuroscience, Vol. 11, No. 13, 2020, p. 1914–1924.

Research output: Contribution to journalArticleScientificpeer-review

Multiphoton microscopy of the dermoepidermal junction and automated identification of dysplastic tissues with deep learning. / Huttunen, Mikko J.; Hristu, Radu; Dumitru, Adrian; Floroiu, Iustin; Costache, Mariana; Stanciu, Stefan G.

In: Biomedical Optics Express, Vol. 11, No. 1, 2020, p. 186-199.

Research output: Contribution to journalArticleScientificpeer-review

Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex. / Liekkinen, Juho; Enkavi, Giray; Javanainen, Matti; Olmeda, Barbara; Pérez-Gil, Jesús; Vattulainen, Ilpo.

In: JOURNAL OF MOLECULAR BIOLOGY, Vol. 432, No. 10, 2020, p. 3251-3268.

Research output: Contribution to journalArticleScientificpeer-review

Surface Stabilization and Dissolution Rate Improvement of Amorphous Compacts with Thin Polymer Coatings : Can We Have It All? / Novakovic, Dunja; Peltonen, Leena; Isomäki, Antti; Fraser-Miller, Sara J.; Nielsen, Line Hagner; Laaksonen, Timo; Strachan, Clare J.

In: Molecular Pharmaceutics, Vol. 17, No. 4, 2020, p. 1248-1260.

Research output: Contribution to journalArticleScientificpeer-review

The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2. / Legrand, Cyril; Saleppico, Roberto; Sticht, Jana; Lolicato, Fabio; Müller, Hans Michael; Wegehingel, Sabine; Dimou, Eleni; Steringer, Julia P.; Ewers, Helge; Vattulainen, Ilpo; Freund, Christian; Nickel, Walter.

In: Communications biology, Vol. 3, No. 1, 141, 2020.

Research output: Contribution to journalArticleScientificpeer-review

Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography. / Gracia-Tabuenca, Javier; Seppä, Ville-Pekka; Jauhiainen, Milla; Paassilta, Marita; Viik, Jari; Karjalainen, Jussi.

In: Respiratory Physiology and Neurobiology, Vol. 271, 103312, 2020.

Research output: Contribution to journalArticleScientificpeer-review

Toward Rigorous Materials Production : New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices. / Nymark, Penny; Bakker, Martine; Dekkers, Susan; Franken, Remy; Fransman, Wouter; García-Bilbao, Amaia; Greco, Dario; Gulumian, Mary; Hadrup, Niels; Halappanavar, Sabina; Hongisto, Vesa; Hougaard, Karin Sørig; Jensen, Keld Alstrup; Kohonen, Pekka; Koivisto, Antti Joonas; Dal Maso, Miikka; Oosterwijk, Thies; Poikkimäki, Mikko; Rodriguez-Llopis, Isabel; Stierum, Rob; Sørli, Jorid Birkelund; Grafström, Roland.

In: Small, Vol. 16, No. 6, 1904749, 2020.

Research output: Contribution to journalReview ArticleScientificpeer-review

Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding. / Losoi, Pauli S.; Santala, Ville P.; Santala, Suvi M.

In: ACS Synthetic Biology, Vol. 8, No. 12, 20.12.2019, p. 2642-2650.

Research output: Contribution to journalArticleScientificpeer-review

Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies. / Intosalmi, Jukka; Scott, Adrian C.; Hays, Michelle; Flann, Nicholas; Yli-Harja, Olli; Lähdesmäki, Harri; Dudley, Aimée M.; Skupin, Alexander.

In: BMC Molecular and Cell Biology, Vol. 20, No. 1, 59, 19.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology : A Cooperative Service Model. / Emmert-Streib, Frank; Dehmer, Matthias; Yli-Harja, Olli.

In: Frontiers in cell and developmental biology, Vol. 7, 349, 17.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Environmental monitoring with distributed mesh networks : An overview and practical implementation perspective for urban scenario. / Ometov, Aleksandr; Bezzateev, Sergey; Voloshina, Natalia; Masek, Pavel; Komarov, Mikhail.

In: Sensors (Switzerland), Vol. 19, No. 24, 5548, 02.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Key drivers of cloud response to surface-active organics. / Lowe, S. J.; Partridge, D. G.; Davies, J. F.; Wilson, K. R.; Topping, D.; Riipinen, I.

In: Nature Communications, Vol. 10, No. 1, 5214, 01.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Programmable responsive hydrogels inspired by classical conditioning algorithm. / Zhang, Hang; Zeng, Hao; Priimägi, Arri; Ikkala, Olli.

In: Nature Communications, Vol. 10, No. 1, 3267, 01.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

The role of highly oxygenated organic molecules in the Boreal aerosol-cloud-climate system. / Roldin, Pontus; Ehn, Mikael; Kurtén, Theo; Olenius, Tinja; Rissanen, Matti P.; Sarnela, Nina; Elm, Jonas; Rantala, Pekka; Hao, Liqing; Hyttinen, Noora; Heikkinen, Liine; Worsnop, Douglas R.; Pichelstorfer, Lukas; Xavier, Carlton; Clusius, Petri; Öström, Emilie; Petäjä, Tuukka; Kulmala, Markku; Vehkamäki, Hanna; Virtanen, Annele; Riipinen, Ilona; Boy, Michael.

In: Nature Communications, Vol. 10, No. 1, 4370, 01.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region. / Häkkinen, Antti; Oliveira, Samuel M.D.; Neeli-Venkata, Ramakanth; Ribeiro, Andre S.

In: Journal of the Royal Society Interface, Vol. 16, No. 161, 20190507, 01.12.2019.

Research output: Contribution to journalArticleScientificpeer-review

Spectral object recognition in hyperspectral holography with complex-domain denoising. / Shevkunov, Igor; Katkovnik, Vladimir; Claus, Daniel; Pedrini, Giancarlo; Petrov, Nikolay V.; Egiazarian, Karen.

In: Sensors (Switzerland), Vol. 19, No. 23, 5188, 26.11.2019.

Research output: Contribution to journalArticleScientificpeer-review

Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion. / Eerola, Sini K.; Santio, Niina M.; Rinne, Sanni; Kouvonen, Petri; Corthals, Garry L.; Scaravilli, Mauro; Scala, Giovanni; Serra, Angela; Greco, Dario; Ruusuvuori, Pekka; Latonen, Leena; Rainio, Eeva Marja; Visakorpi, Tapio; Koskinen, Päivi J.

In: CELL COMMUNICATION AND SIGNALING, Vol. 17, No. 1, 148, 15.11.2019.

Research output: Contribution to journalArticleScientificpeer-review

Statistical evaluation of barkhausen noise testing (BNT) for ground samples. / Tomkowski, Robert; Sorsa, Aki; Santa-Aho, Suvi; Lundin, Per; Vippola, Minnamari.

In: Sensors (Switzerland), Vol. 19, No. 21, 4716, 01.11.2019.

Research output: Contribution to journalArticleScientificpeer-review

Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry. / Bahrudeen, Mohamed N.M.; Chauhan, Vatsala; Palma, Cristina S.D.; Oliveira, Samuel M.D.; Kandavalli, Vinodh K.; Ribeiro, Andre S.

In: Journal of Microbiological Methods, Vol. 166, 105745, 22.10.2019.

Research output: Contribution to journalArticleScientificpeer-review

Improved water services cooperation through clarification of rules and roles. / Inha, Laura M.; Katko, Tapio S.; Rajala, Riikka P.

In: Water (Switzerland), Vol. 11, No. 10, 2172, 19.10.2019.

Research output: Contribution to journalArticleScientificpeer-review

Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms. / Hajdu-Rahkama, Réka; Ahoranta, Sarita; Lakaniemi, Aino-Maija; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 150, 107286, 15.10.2019.

Research output: Contribution to journalArticleScientificpeer-review

Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission. / Saegusa, Toshiyuki; Sakai, Hayato; Nagashima, Hiroki; Kobori, Yasuhiro; Tkachenko, Nikolai V.; Hasobe, Taku.

In: Journal of the American Chemical Society, Vol. 141, No. 37, 18.09.2019, p. 14720-14727.

Research output: Contribution to journalArticleScientificpeer-review

Effects of nanofibrillated cellulose hydrogels on adipose tissue extract and hepatocellular carcinoma cell spheroids in freeze-drying. / Auvinen, Vili-Veli; Merivaara, Arto; Kiiskinen, Jasmi; Paukkonen, Heli; Laurén, Patrick; Hakkarainen, Tiina; Koivuniemi, Raili; Sarkanen, Riina; Ylikomi, Timo; Laaksonen, Timo; Yliperttula, Marjo.

In: Cryobiology, 15.09.2019.

Research output: Contribution to journalArticleScientificpeer-review

An efficient auxin-inducible degron system with low basal degradation in human cells. / Li, Shiqian; Prasanna, Xavier; Salo, Veijo T.; Vattulainen, Ilpo; Ikonen, Elina.

In: Nature Methods, Vol. 16, No. 9, 01.09.2019, p. 866-869.

Research output: Contribution to journalArticleScientificpeer-review

Behavior of the DPH fluorescence probe in membranes perturbed by drugs. / Poojari, Chetan; Wilkosz, Natalia; Lira, Rafael B.; Dimova, Rumiana; Jurkiewicz, Piotr; Petka, Rafał; Kepczynski, Mariusz; Róg, Tomasz.

In: Chemistry and Physics of Lipids, Vol. 223, 104784, 01.09.2019.

Research output: Contribution to journalArticleScientificpeer-review

Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes. / Kreutzer, Joose; Viehrig, Marlitt; Pölönen, Risto Pekka; Zhao, Feihu; Ojala, Marisa; Aalto-Setälä, Katriina; Kallio, Pasi.

In: BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 23.08.2019.

Research output: Contribution to journalArticleScientificpeer-review

Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels. / Wang, Shujiang; Nawale, Ganesh N.; Oommen, Oommen P.; Hilborn, Jöns; Varghese, Oommen P.

In: Polymer Chemistry, Vol. 10, No. 31, 21.08.2019, p. 4322-4327.

Research output: Contribution to journalArticleScientificpeer-review

Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium. / Johansson, Julia K.; Karema-Jokinen, Viivi I.; Hakanen, Satu; Jylhä, Antti; Uusitalo, Hannu; Vihinen-Ranta, Maija; Skottman, Heli; Ihalainen, Teemu O.; Nymark, Soile.

In: BMC BIOLOGY, Vol. 17, No. 1, 63, 15.08.2019.

Research output: Contribution to journalArticleScientificpeer-review

Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications. / Pitkänen, S.; Paakinaho, K.; Pihlman, H.; Ahola, N.; Hannula, M.; Asikainen, S.; Manninen, M.; Morelius, M.; Keränen, P.; Hyttinen, J.; Kellomäki, M.; Laitinen-Vapaavuori, O.; Miettinen, S.

In: European cells & materials, Vol. 38, 05.08.2019, p. 35-50.

Research output: Contribution to journalArticleScientificpeer-review

Alkane and wax ester production from lignin-related aromatic compounds. / Salmela, Milla; Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Santala, Ville.

In: Biotechnology and Bioengineering, Vol. 116, No. 8, 01.08.2019, p. 1934-1945.

Research output: Contribution to journalArticleScientificpeer-review

Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders. / Smolander, Johannes; Dehmer, Matthias; Emmert-Streib, Frank.

In: FEBS Open Bio, Vol. 9, No. 7, 01.07.2019, p. 1232-1248.

Research output: Contribution to journalArticleScientificpeer-review

An architectural understanding of natural sway frequencies in trees. / Jackson, T.; Shenkin, A.; Moore, J.; Bunce, A.; van Emmerik, T.; Kane, B.; Burcham, D.; James, K.; Selker, J.; Calders, K.; Origo, N.; Disney, M.; Burt, A.; Wilkes, P.; Raumonen, P.; Gonzalez de Tanago Menaca, J.; Lau, A.; Herold, M.; Goodman, R. C.; Fourcaud, T.; Malhi, Y.

In: Journal of the Royal Society. Interface, Vol. 16, No. 155, 28.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection. / Kadekar, Sandeep; Nawale, Ganesh N.; Karlsson, Kira; Ålander, Cecilia; Oommen, Oommen P.; Varghese, Oommen P.

In: Molecular Therapy - Nucleic Acids, Vol. 16, 07.06.2019, p. 597-604.

Research output: Contribution to journalArticleScientificpeer-review

The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers. / Lolicato, Fabio; Joly, Loic; Martinez-Seara, Hector; Fragneto, Giovanna; Scoppola, Ernesto; Baldelli Bombelli, Francesca; Vattulainen, Ilpo; Akola, Jaakko; Maccarini, Marco.

In: Small, Vol. 15, No. 23, 1805046, 07.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Methods for simultaneous robot-world-hand–eye calibration : A comparative study. / Ali, Ihtisham; Suominen, Olli; Gotchev, Atanas; Morales, Emilio Ruiz.

In: Sensors (Switzerland), Vol. 19, No. 12, 2837, 02.06.2019.

Research output: Contribution to journalArticleScientificpeer-review

Technical Note : Noise models for virtual clinical trials of digital breast tomosynthesis. / Borges, Lucas R.; Barufaldi, Bruno; Caron, Renato F.; Bakic, Predrag R.; Foi, Alessandro; Maidment, Andrew D.A.; Vieira, Marcelo A.C.

In: Medical Physics, Vol. 46, No. 6, 01.06.2019, p. 2683-2689.

Research output: Contribution to journalArticleScientificpeer-review

Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons. / Habib, Mohsin; Serebryannikov, Andriy E.; Caglayan, Humeyra; Vandenbosch, Guy A.E.; Ozbay, Ekmel.

In: Plasmonics, Vol. 14, No. 3, 06.2019, p. 721-729.

Research output: Contribution to journalArticleScientificpeer-review

Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current. / Kekonen, Atte; Bergelin, Mikael; Johansson, Max; Kumar Joon, Narender; Bobacka, Johan; Viik, Jari.

In: Sensors, Vol. 19, No. 11, 31.05.2019.

Research output: Contribution to journalArticleScientificpeer-review

Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes. / Manna, Moutusi; Nieminen, Tuomo; Vattulainen, Ilpo.

In: ANNUAL REVIEW OF BIOPHYSICS, Vol. 48, 06.05.2019, p. 421-439.

Research output: Contribution to journalReview ArticleScientificpeer-review

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions. / Javanainen, Matti; Enkavi, Giray; Guixà-Gonzaléz, Ramon; Kulig, Waldemar; Martinez-Seara, Hector; Levental, Ilya; Vattulainen, Ilpo.

In: PLoS Computational Biology, Vol. 15, No. 5, e1007033, 01.05.2019.

Research output: Contribution to journalArticleScientificpeer-review

Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times. / Peltokangas, Mikko; Suominen, Velipekka; Vakhitov, Damir; Korhonen, Janne; Verho, Jarmo; Mattila, Ville M.; Romsi, Pekka; Lekkala, Jukka; Vehkaoja, Antti; Oksala, Niku.

In: IEEE Journal of Biomedical and Health Informatics, Vol. 23, No. 3, 05.2019, p. 1058-1065.

Research output: Contribution to journalArticleScientificpeer-review

Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution. / Kerst, Thomas; Malmbeck, Rikard; lal Banik, Nidhu L.; Toivonen, Juha.

In: Sensors (Switzerland), Vol. 19, No. 7, 1602, 01.04.2019.

Research output: Contribution to journalArticleScientificpeer-review

Positioning information privacy in intelligent transportation systems : An overview and future perspective. / Ometov, Aleksandr; Bezzateev, Sergey; Davydov, Vadim; Shchesniak, Anna; Masek, Pavel; Lohan, Elena Simona; Koucheryavy, Yevgeni.

In: Sensors, Vol. 19, No. 7, 1603, 01.04.2019.

Research output: Contribution to journalArticleScientificpeer-review

Deep Learning in Image Cytometry : A Review. / Gupta, Anindya; Harrison, Philip J.; Wieslander, Håkan; Pielawski, Nicolas; Kartasalo, Kimmo; Partel, Gabriele; Solorzano, Leslie; Suveer, Amit; Klemm, Anna H.; Spjuth, Ola; Sintorn, Ida Maria; Wählby, Carolina.

In: Cytometry Part A, Vol. 95, No. 4, 04.2019, p. 366-380.

Research output: Contribution to journalReview ArticleScientificpeer-review

Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules. / Luo, Jin; Lehtinen, Tapio; Efimova, Elena; Santala, Ville; Santala, Suvi.

In: Microbial Cell Factories, Vol. 18, No. 1, 48, 11.03.2019.

Research output: Contribution to journalArticleScientificpeer-review

Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake. / Rissanen, Antti J.; Peura, Sari; Mpamah, Promise A.; Taipale, Sami; Tiirola, Marja; Biasi, Christina; Mäki, Anita; Nykänen, Hannu.

In: FEMS Microbiology Letters, Vol. 366, No. 5, 01.03.2019.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic syndrome is associated with decreased heart rate variability in a sex-dependent manner : a comparison between 252 men and 249 women. / Kangas, Pauliina; Tikkakoski, Antti; Uitto, Marko; Viik, Jari; Bouquin, Heidi; Niemelä, Onni; Mustonen, Jukka; Pörsti, Ilkka.

In: Clinical Physiology and Functional Imaging, Vol. 39, No. 2, 03.2019, p. 160-167.

Research output: Contribution to journalArticleScientificpeer-review

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. / Liimatainen, Kaisa; Kananen, Lauri; Latonen, Leena; Ruusuvuori, Pekka.

In: BMC Bioinformatics, Vol. 20, No. 1, 80, 15.02.2019.

Research output: Contribution to journalArticleScientificpeer-review

Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression. / Startceva, Sofia; Kandavalli, Vinodh K.; Visa, Ari; Ribeiro, Andre S.

In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1862, No. 2, 01.02.2019, p. 119-128.

Research output: Contribution to journalArticleScientificpeer-review

Detection of Pancreatic Cancer by Urine Volatile Organic Compound Analysis. / Nissinen, Samuli I.; Roine, Antti; Hokkinen, Lauri; Karjalainen, Markus; Venäläinen, Markus; Helminen, Heli; Niemi, Riikka; Lehtimäki, Terho; Rantanen, Tuomo; Oksala, Niku.

In: Anticancer Research, Vol. 39, No. 1, 01.2019, p. 73-79.

Research output: Contribution to journalArticleScientificpeer-review

Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis. / Ylä-Outinen, Laura; Tanskanen, Jarno M.A.; Kapucu, Fikret E.; Hyysalo, Anu; Hyttinen, Jari A.K.; Narkilahti, Susanna.

In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, 2019. p. 299-329 (Advances in Neurobiology; Vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Bioactive glass-ceramics : From macro to nano. / Massera, Jonathan.

Nanostructured Biomaterials for Regenerative Medicine. Woodhead Publishing, 2019. p. 275-292.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Disease modeling of a mutation in α-actinin 2 guides clinical therapy in hypertrophic cardiomyopathy. / Prondzynski, Maksymilian; Lemoine, Marc D.; Zech, Antonia T.L.; Horváth, András; Di Mauro, Vittoria; Koivumäki, Jussi T.; Kresin, Nico; Busch, Josefine; Krause, Tobias; Krämer, Elisabeth; Schlossarek, Saskia; Spohn, Michael; Friedrich, Felix W.; Münch, Julia; Laufer, Sandra D.; Redwood, Charles; Volk, Alexander E.; Hansen, Arne; Mearini, Giulia; Catalucci, Daniele; Meyer, Christian; Christ, Torsten; Patten, Monica; Eschenhagen, Thomas; Carrier, Lucie.

In: EMBO Molecular Medicine, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Do bone geometric properties of the proximal femoral diaphysis reflect loading history, muscle properties, or body dimensions? / Niinimäki, Sirpa; Narra, Nathaniel; Härkönen, Laura; Abe, Shinya; Nikander, Riku; Hyttinen, Jari; Knüsel, Christopher J.; Sievänen, Harri.

In: American Journal of Human Biology, 2019.

Research output: Contribution to journalArticleScientificpeer-review

L1000 viewer : A search engine and Web interface for the LINCS data repository. / Musa, Aliyu; Tripathi, Shailesh; Dehmer, Matthias; Emmert-Streib, Frank.

In: Frontiers in Genetics, Vol. 10, No. JUN, 557, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Mechanical impact stimulation platform tailored for high-resolution light microscopy. / Halonen, Heidi T.; Hyttinen, Jari A.K.; Ihalainen, Teemu O.

In: HEALTH AND TECHNOLOGY, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic profiling of water-soluble compounds from the extracts of dark septate endophytic fungi (DSE) isolated from scots pine (Pinus sylvestris L.) seedlings using UPLC–orbitrap–MS. / Tienaho, Jenni; Karonen, Maarit; Muilu–Mäkelä, Riina; Wähälä, Kristiina; Denegri, Eduardo Leon; Franzén, Robert; Karp, Matti; Santala, Ville; Sarjala, Tytti.

In: Molecules, Vol. 24, No. 12, 2330, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Optical wireless cochlear implants. / Trevlakis, Stylianos E.; Boulogeorgos, Alexandros Apostolos A.; Sofotasios, Paschalis C.; Muhaidat, Sami; Karagiannidis, George K.

In: Biomedical Optics Express, Vol. 10, No. 2, 2019, p. 707-730.

Research output: Contribution to journalArticleScientificpeer-review

O2-requiring molecular reporters of gene expression for anaerobic microorganisms. / Guglielmetti, Simone; Santala, Ville; Mangayil, Rahul; Ciranna, Alessandro; Karp, Matti T.

In: Biosensors and Bioelectronics, Vol. 123, 2019, p. 1-6.

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer gene regulatory network inferred from RNA-seq data. / Moore, Daniel; Simoes, Ricardo de Matos; Dehmer, Matthias; Emmert-Streib, Frank.

In: CURRENT GENOMICS, Vol. 20, No. 1, 2019, p. 38-48.

Research output: Contribution to journalArticleScientificpeer-review

Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis : Consensus colon cancer subtypes case study. / Glazko, Galina; Zybailov, Boris; Emmert-Streib, Frank; Baranova, Ancha; Rahmatallah, Yasir.

In: PLoS ONE, Vol. 14, No. 8, e0221444, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits. / Martins, Daniel P.; Barros, Michael Taynnan; Balasubramaniam, Sasitharan.

In: IEEE Transactions on Nanobioscience, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent moderate-risk mutations in Finnish breast and ovarian cancer patients. / Nurmi, Anna; Muranen, Taru A.; Pelttari, Liisa M.; Kiiski, Johanna I.; Heikkinen, Tuomas; Lehto, Sini; Kallioniemi, Anne; Schleutker, Johanna; Bützow, Ralf; Blomqvist, Carl; Aittomäki, Kristiina; Nevanlinna, Heli.

In: International Journal of Cancer, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds. / Baino, Francesco; Barberi, Jacopo; Fiume, Elisa; Orlygsson, Gissur; Massera, Jonathan; Verné, Enrica.

In: Journal of Healthcare Engineering, Vol. 2019, 5153136, 2019.

Research output: Contribution to journalArticleScientificpeer-review

Synthesis of 6,12-disubstituted methanodibenzo[b,f ][1,5]dioxocins : Pyrrolidine catalyzed self-condensation of 2′-Hydroxyacetophenones. / Assoah, Benedicta; Riihonen, Vesa; Vale, João R.; Valkonen, Arto; Candeias, Nuno R.

In: Molecules, Vol. 24, No. 13, 2405, 2019.

Research output: Contribution to journalArticleScientificpeer-review

SCIP : a single-cell image processor toolbox. / Martins, Leonardo; Neeli-Venkata, Ramakanth; Oliveira, Samuel M.D.; Häkkinen, Antti; Ribeiro, Andre S.; Fonseca, José M.

In: Bioinformatics, Vol. 34, No. 24, 15.12.2018, p. 4318-4320.

Research output: Contribution to journalArticleScientificpeer-review

Beaming random lasers with soliton control. / Perumbilavil, Sreekanth; Piccardi, Armando; Barboza, Raouf; Buchnev, Oleksandr; Kauranen, Martti; Strangi, Giuseppe; Assanto, Gaetano.

In: Nature Communications, Vol. 9, No. 1, 3863, 01.12.2018.

Research output: Contribution to journalArticleScientificpeer-review

Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch. / Santala, Suvi; Efimova, Elena; Santala, Ville.

In: Metabolic Engineering Communications, Vol. 7, e00078, 01.12.2018.

Research output: Contribution to journalArticleScientificpeer-review

Machine learning plastic deformation of crystals. / Salmenjoki, Henri; Alava, Mikko J.; Laurson, Lasse.

In: Nature Communications, Vol. 9, No. 1, 5307, 01.12.2018.

Research output: Contribution to journalArticleScientificpeer-review

Normalization of force to muscle cross-sectional area : A helpful attempt to reduce data scattering in contractility studies? / Pecha, Simon; Koivumäki, Jussi; Geelhoed, Bastiaan; Kempe, Romy; Berk, Emanuel; Engel, Andreas; Reichenspurner, Hermann; Eschenhagen, Thomas; Ravens, Ursula; Kaumann, Alberto; Christ, Torsten.

In: Acta Physiologica, Vol. 224, No. 4, e13202, 01.12.2018.

Research output: Contribution to journalEditorialScientificpeer-review

Structural basis of actin monomer re-charging by cyclase-Associated protein. / Kotila, Tommi; Kogan, Konstantin; Enkavi, Giray; Guo, Siyang; Vattulainen, Ilpo; Goode, Bruce L.; Lappalainen, Pekka.

In: Nature Communications, Vol. 9, No. 1, 1892, 01.12.2018.

Research output: Contribution to journalArticleScientificpeer-review

Bi-directional cell-pericellular matrix interactions direct stem cell fate. / Ferreira, Silvia A.; Motwani, Meghna S.; Faull, Peter A.; Seymour, Alexis J.; Yu, Tracy T.L.; Enayati, Marjan; Taheem, Dheraj K.; Salzlechner, Christoph; Haghighi, Tabasom; Kania, Ewa M.; Oommen, Oommen P.; Ahmed, Tarek; Loaiza, Sandra; Parzych, Katarzyna; Dazzi, Francesco; Varghese, Oommen P.; Festy, Frederic; Grigoriadis, Agamemnon E.; Auner, Holger W.; Snijders, Ambrosius P.; Bozec, Laurent; Gentleman, Eileen.

In: Nature Communications, Vol. 9, No. 1, 4049, 12.2018.

Research output: Contribution to journalArticleScientificpeer-review

The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration. / Gasik, Michael; Zühlke, Alexandra; Haaparanta, Anne-Marie; Muhonen, Virpi; Laine, Kaisa; Bilotsky, Yevgen; Kellomäki, Minna; Kiviranta, Ilkka.

In: Frontiers in Bioengineering and Biotechnology, Vol. 6, No. NOV, 187, 30.11.2018.

Research output: Contribution to journalArticleScientificpeer-review

Machine learning analysis of extreme events in optical fibre modulation instability. / Närhi, Mikko; Salmela, Lauri; Toivonen, Juha; Billet, Cyril; Dudley, John M.; Genty, Goëry.

In: Nature Communications, Vol. 9, No. 1, 22.11.2018.

Research output: Contribution to journalArticleScientificpeer-review

M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components. / Rinne, Jukka; Keskinen, Jari; Berger, Paul R.; Lupo, Donald; Valkama, Mikko.

In: Sensors (Basel, Switzerland), Vol. 18, No. 11, 16.11.2018.

Research output: Contribution to journalArticleScientificpeer-review

Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters. / Chevrier, Daniel M.; Raich, Lluís; Rovira, Carme; Das, Anindita; Luo, Zhentao; Yao, Qiaofeng; Chatt, Amares; Xie, Jianping; Jin, Rongchao; Akola, Jaakko; Zhang, Peng.

In: Journal of the American Chemical Society, Vol. 140, No. 45, 14.11.2018, p. 15430-15436.

Research output: Contribution to journalArticleScientificpeer-review

Understanding Dissolution and Crystallization with Imaging : A Surface Point of View. / Novakovic, Dunja; Isomäki, Antti; Pleunis, Bibi; Fraser-Miller, Sara J.; Peltonen, Leena; Laaksonen, Timo; Strachan, Clare J.

In: Molecular Pharmaceutics, Vol. 15, No. 11, 05.11.2018, p. 5361-5373.

Research output: Contribution to journalArticleScientificpeer-review

Super-resolution microscopy for biological specimens : Lensless phase retrieval in noisy conditions. / Shevkunov, Igor; Katkovnik, Vladimir; Petrov, Nikolay V.; Egiazarian, Karen.

In: Biomedical Optics Express, Vol. 9, No. 11, #340805, 01.11.2018, p. 5511-5523.

Research output: Contribution to journalArticleScientificpeer-review

How to minimize dye-induced perturbations while studying biomembrane structure and dynamics : PEG linkers as a rational alternative. / Mobarak, Edouard; Javanainen, Matti; Kulig, Waldemar; Honigmann, Alf; Sezgin, Erdinc; Aho, Noora; Eggeling, Christian; Rog, Tomasz; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta - Biomembranes, Vol. 1860, No. 11, 11.2018, p. 2436-2445.

Research output: Contribution to journalArticleScientificpeer-review

Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology. / Calderón-Garcidueñas, Lilian; González-Maciel, Angélica; Reynoso-Robles, Rafael; Kulesza, Randy J.; Mukherjee, Partha S.; Torres-Jardón, Ricardo; Rönkkö, Topi; Doty, Richard L.

In: Environmental Research, Vol. 166, 01.10.2018, p. 348-362.

Research output: Contribution to journalArticleScientificpeer-review

Novel osteoconductive β-tricalcium phosphate/poly(L-lactide-co-e-caprolactone) scaffold for bone regeneration : a study in a rabbit calvarial defect. / Pihlman, Hanna; Keränen, Pauli; Paakinaho, Kaarlo; Linden, Jere; Hannula, Markus; Manninen, Iida Kaisa; Hyttinen, Jari; Manninen, Mikko; Laitinen-Vapaavuori, Outi.

In: Journal of Materials Science: Materials in Medicine, Vol. 29, No. 10, 156, 01.10.2018.

Research output: Contribution to journalArticleScientificpeer-review

Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression. / Martins, Daniel P.; Leetanasaksakul, Kantinan; Barros, Michael Taynnan; Thamchaipenet, Arinthip; Donnelly, William; Balasubramaniam, Sasitharan.

In: IEEE Transactions on Nanobioscience, Vol. 17, No. 4, 10.2018, p. 533-542.

Research output: Contribution to journalArticleScientificpeer-review

Quantifying branch architecture of tropical trees using terrestrial LiDAR and 3D modelling. / Lau, Alvaro; Bentley, Lisa Patrick; Martius, Christopher; Shenkin, Alexander; Bartholomeus, Harm; Raumonen, Pasi; Malhi, Yadvinder; Jackson, Tobias; Herold, Martin.

In: Trees - Structure and Function, Vol. 32, No. 5, 10.2018, p. 1219-1231.

Research output: Contribution to journalArticleScientificpeer-review

Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater. / Dessì, Paolo; Porca, Estefania; Lakaniemi, Aino-Maija; Collins, Gavin; Lens, Piet N.L.

In: Biochemical Engineering Journal, Vol. 137, 15.09.2018, p. 214-221.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling. / Pantsar, Tatu; Rissanen, Sami; Dauch, Daniel; Laitinen, Tuomo; Vattulainen, Ilpo; Poso, Antti.

In: PLoS Computational Biology, Vol. 14, No. 9, e1006458, 10.09.2018.

Research output: Contribution to journalArticleScientificpeer-review

Computational modeling of electrophysiology and pharmacotherapy of atrial fibrillation : Recent advances and future challenges. / Vagos, Márcia R.S.S.; van Herck, Ilsbeth G.M.; Sundnes, Joakim; Arevalo, Hermenegild J.; Edwards, Andrew G.; Koivumäki, Jussi T.

In: Frontiers in Physiology, Vol. 9, No. SEP, 1221, 04.09.2018.

Research output: Contribution to journalReview ArticleScientificpeer-review

Comparative analysis of tissue reconstruction algorithms for 3D histology. / Kartasalo, Kimmo; Latonen, Leena; Vihinen, Jorma; Visakorpi, Tapio; Nykter, Matti; Ruusuvuori, Pekka.

In: Bioinformatics, Vol. 34, No. 17, 01.09.2018, p. 3013-3021.

Research output: Contribution to journalArticleScientificpeer-review

Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms. / Milagro, Javier; Gil, Eduardo; Lazaro, Jesus; Seppae, Ville Pekka; Malmberg, Leo Pekka; Pelkonen, Anna Susanna; Kotaniemi-Syrjanen, Anne; Makela, Mika; Viik, Jari; Bailon, Raquel.

In: IEEE Journal of Biomedical and Health Informatics, Vol. 22, No. 5, 09.2018, p. 1332-1340.

Research output: Contribution to journalArticleScientificpeer-review

Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. / Owen, Michael C.; Kulig, Waldemar; Poojari, Chetan; Rog, Tomasz; Strodel, Birgit.

In: Biochimica et Biophysica Acta - Biomembranes, Vol. 1860, No. 9, 09.2018, p. 1709-1720.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of food frequency questionnaire data and shopping records for the assessment of food intake. / Kallonen, Antti; Nieminen, Hannu; Das, Soumya; Sallinen, Riitta.

Proceedings of Seventh International Conference on Well-Being in the Information Society: Fighting Inequalities (WIS 2018). 2018. p. 25-30 (TUCS Lecture Notes; Vol. 28).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Production of alkanes from CO2 by engineered bacteria. / Lehtinen, Tapio; Virtanen, Henri; Santala, Suvi; Santala, Ville.

In: Biotechnology for Biofuels, Vol. 11, 228, 21.08.2018.

Research output: Contribution to journalArticleScientificpeer-review

The effect of S53P4-based borosilicate glasses and glass dissolution products on the osteogenic commitment of human adipose stem cells. / Ojansivu, Miina; Mishra, Ayush; Vanhatupa, Sari; Juntunen, Miia; Larionova, Antonina; Massera, Jonathan; Miettinen, Susanna.

In: PLoS ONE, Vol. 13, No. 8, e0202740, 01.08.2018.

Research output: Contribution to journalArticleScientificpeer-review

Selenate removal in biofilm systems : Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community. / Tan, Lea Chua; Espinosa-Ortiz, Erika J.; Nancharaiah, Yarlagadda V.; van Hullebusch, Eric D.; Gerlach, Robin; Lens, Piet Nl.

In: Journal of Chemical Technology and Biotechnology, Vol. 93, No. 8, 08.2018, p. 2380-2389.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation. / Salmela, Milla; Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Mangayil, Rahul.

In: Biotechnology for Biofuels, Vol. 11, No. 1, 187, 03.07.2018.

Research output: Contribution to journalArticleScientificpeer-review

Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films. / Laurén, Patrick; Paukkonen, Heli; Lipiäinen, Tiina; Dong, Yujiao; Oksanen, Timo; Räikkönen, Heikki; Ehlers, Henrik; Laaksonen, Päivi; Yliperttula, Marjo; Laaksonen, Timo.

In: Pharmaceutical Research, Vol. 35, No. 7, 145, 01.07.2018.

Research output: Contribution to journalArticleScientificpeer-review

Segmentation of vessel structures from photoacoustic images with reliability assessment. / Raumonen, Pasi; Tarvainen, Tanja.

In: Biomedical Optics Express, Vol. 9, No. 7, 01.07.2018, p. 2887-2904.

Research output: Contribution to journalArticleScientificpeer-review

Automatic optimization of an in silico model of human iPSC derived cardiomyocytes recapitulating calcium handling abnormalities. / Paci, Michelangelo; Pölönen, Risto-Pekka; Cori, Dario; Penttinen, Kirsi; Aalto-Setälä, Katriina; Severi, Stefano; Hyttinen, Jari.

In: Frontiers in Physiology, Vol. 9, No. JUN, 709, 26.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Monitoring of heart rate and inter-beat intervals with wrist plethysmography in patients with atrial fibrillation. / Harju, Jarkko; Tarniceriu, Adrian; Parak, Jakub; Vehkaoja, Antti; Yli-Hankala, Arvi; Korhonen, Ilkka.

In: Physiological Measurement, Vol. 39, No. 6, 065007, 26.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins. / Laulumaa, Saara; Nieminen, Tuomo; Raasakka, Arne; Krokengen, Oda C.; Safaryan, Anushik; Hallin, Erik I.; Brysbaert, Guillaume; Lensink, Marc F.; Ruskamo, Salla; Vattulainen, Ilpo; Kursula, Petri.

In: BMC Structural Biology, Vol. 18, No. 1, 8, 25.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Effect of surfactant type and sonication energy on the electrical conductivity properties of nanocellulose-CNT nanocomposite films. / Siljander, Sanna; Keinänen, Pasi; Räty, Anna; Ramakrishnan, Karthik Ram; Tuukkanen, Sampo; Kunnari, Vesa; Harlin, Ali; Vuorinen, Jyrki; Kanerva, Mikko.

In: International Journal of Molecular Sciences, Vol. 19, No. 6, 1819, 20.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra. / Pirhonen, Mikko; Peltokangas, Mikko; Vehkaoja, Antti.

In: Sensors, Vol. 18, No. 6, 1693, 01.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Altered polyamine profiles in colorectal cancer. / Venäläinen, Markus K.; Roine, Antti N.; Häkkinen, Merja R.; Vepsäläinen, Jouko J.; Kumpulainen, Pekka S.; Kiviniemi, Mikko S.; Lehtimäki, Terho; Oksala, Niku K.; Rantanen, Tuomo K.

In: Anticancer Research, Vol. 38, No. 6, 01.06.2018, p. 3601-3607.

Research output: Contribution to journalArticleScientificpeer-review

Enhancing the usability of low-cost eye trackers for rehabilitation applications. / Gavas, Rahul Dasharath; Roy, Sangheeta; Chatterjee, Debatri; Tripathy, Soumya Ranjan; Chakravarty, Kingshuk; Sinha, Aniruddha.

In: PLoS ONE, Vol. 13, No. 6, e0196348, 01.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Evaluation of dry electrodes in canine heart rate monitoring. / Virtanen, Juhani; Somppi, Sanni; Törnqvist, Heini; Jeyhani, Vala; Fiedler, Patrique; Gizatdinova, Yulia; Majaranta, Päivi; Väätäjä, Heli; Cardó, Anna Valldeoriola; Lekkala, Jukka; Tuukkanen, Sampo; Surakka, Veikko; Vainio, Outi; Vehkaoja, Antti.

In: Sensors, Vol. 18, No. 6, 1757, 01.06.2018.

Research output: Contribution to journalArticleScientificpeer-review

Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp. / George, Lijo; Hiltunen, Arto; Santala, Ville; Efimov, Alexander.

In: Journal of Inorganic Biochemistry, Vol. 183, 01.06.2018, p. 94-100.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury : An All-Atom Molecular Dynamics Study. / Owen, Michael C.; Kulig, Waldemar; Rog, Tomasz; Vattulainen, Ilpo; Strodel, Birgit.

In: Journal of Membrane Biology, Vol. 251, No. 3, 06.2018, p. 521-534.

Research output: Contribution to journalArticleScientificpeer-review

The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures. / Neeli-Venkata, Ramakanth; Oliveira, Samuel M.D.; Martins, Leonardo; Startceva, Sofia; Bahrudeen, Mohamed; Fonseca, Jose M.; Minoia, Marco; Ribeiro, Andre S.

In: Physical Biology, Vol. 15, No. 5, 056002, 18.05.2018.

Research output: Contribution to journalArticleScientificpeer-review

Crystallization Kinetics of an Amorphous Pharmaceutical Compound Using Fluorescence-Lifetime-Imaging Microscopy. / Rautaniemi, Kaisa; Vuorimaa-Laukkanen, Elina; Strachan, Clare J.; Laaksonen, Timo.

In: Molecular Pharmaceutics, Vol. 15, No. 5, 07.05.2018, p. 1964-1971.

Research output: Contribution to journalArticleScientificpeer-review

Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires. / Sutka, Andris; Timusk, Martin; Joost, Urmas; Ignatans, Reinis; Maiorov, Mikhail.

In: e-Journal of Surface Science and Nanotechnology, Vol. 16, 02.05.2018, p. 119-121.

Research output: Contribution to journalArticleScientificpeer-review

A review of connectivity map and computational approaches in pharmacogenomics. / Musa, Aliyu; Ghoraie, Laleh Soltan; Zhang, Shu Dong; Glazko, Galina; Yli-Harja, Olli; Dehmer, Matthias; Haibe-Kains, Benjamin; Emmert-Streib, Frank.

In: Briefings in Bioinformatics, Vol. 19, No. 3, 01.05.2018, p. 506-523.

Research output: Contribution to journalArticleScientificpeer-review

Non-intersecting leaf insertion algorithm for tree structure models. / Åkerblom, Markku; Raumonen, Pasi; Casella, Eric; Disney, Mathias I.; Danson, F. Mark; Gaulton, Rachel; Schofield, Lucy A.; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170045, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Uncertainty in multispectral lidar signals caused by incidence angle effects. / Kaasalainen, Sanna; Åkerblom, Markku; Nevalainen, Olli; Hakala, Teemu; Kaasalainen, Mikko.

In: Interface Focus, Vol. 8, No. 2, 20170033, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Weighing trees with lasers : Advances, challenges and opportunities. / Disney, M. I.; Boni Vicari, M.; Burt, A.; Calders, K.; Lewis, S. L.; Raumonen, P.; Wilkes, P.

In: Interface Focus, Vol. 8, No. 2, 20170048, 06.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. / Gao, Qingsong; Liang, Wen Wei; Foltz, Steven M.; Mutharasu, Gnanavel; Jayasinghe, Reyka G.; Cao, Song; Liao, Wen Wei; Reynolds, Sheila M.; Wyczalkowski, Matthew A.; Yao, Lijun; Yu, Lihua; Sun, Sam Q.; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Zhang, Jiashan (Julia); Chudamani, Sudha; Liu, Jia; Lolla, Laxmi; Naresh, Rashi; Pihl, Todd; Sun, Qiang; Wan, Yunhu; Wu, Ye; Cho, Juok; DeFreitas, Timothy; Frazer, Scott; Gehlenborg, Nils; Getz, Gad; Heiman, David I.; Kim, Jaegil; Lawrence, Michael S.; Lin, Pei; Meier, Sam; Noble, Michael S.; Saksena, Gordon; Voet, Doug; Zhang, Hailei; Bernard, Brady; Chambwe, Nyasha; Dhankani, Varsha; Knijnenburg, Theo.

In: Cell Reports, Vol. 23, No. 1, 03.04.2018, p. 227-238.e3.

Research output: Contribution to journalArticleScientificpeer-review

The characterization of surgical smoke from various tissues and its implications for occupational safety. / Karjalainen, Markus; Kontunen, Anton; Saari, Sampo; Rönkkö, Topi; Lekkala, Jukka; Roine, Antti; Oksala, Niku.

In: PLoS ONE, Vol. 13, No. 4, e0195274, 01.04.2018.

Research output: Contribution to journalArticleScientificpeer-review

Depletion of nuclear import protein karyopherin alpha 7 (KPNA7) induces mitotic defects and deformation of nuclei in cancer cells. / Vuorinen, Elisa M.; Rajala, Nina K.; Ihalainen, Teemu O.; Kallioniemi, Anne.

In: BMC Cancer, Vol. 18, No. 1, 325, 27.03.2018.

Research output: Contribution to journalArticleScientificpeer-review

Functional Outcome of Human Adipose Stem Cell Injections in Rat Anal Sphincter Acute Injury Model. / Kuismanen, Kirsi; Juntunen, Miia; Narra Girish, Nathaniel; Tuominen, Heikki; Huhtala, Heini; Nieminen, Kari; Hyttinen, Jari; Miettinen, Susanna.

In: Stem Cells Translational Medicine, Vol. 7, No. 3, 01.03.2018, p. 295-304.

Research output: Contribution to journalArticleScientificpeer-review

Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells. / Karvinen, Jennika; Joki, Tiina; Ylä-Outinen, Laura; Koivisto, Janne T.; Narkilahti, Susanna; Kellomäki, Minna.

In: Reactive and Functional Polymers, Vol. 124, 01.03.2018, p. 29-39.

Research output: Contribution to journalArticleScientificpeer-review

An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band. / Mehrang, Saeed; Pietilä, Julia; Korhonen, Ilkka.

In: Sensors, Vol. 18, No. 2, 613, 22.02.2018.

Research output: Contribution to journalArticleScientificpeer-review

In a quest for engineering acidophiles for biomining applications : Challenges and opportunities. / Gumulya, Yosephine; Boxall, Naomi J.; Khaleque, Himel N.; Santala, Ville; Carlson, Ross P.; Kaksonen, Anna H.

In: Genes, Vol. 9, No. 2, 116, 21.02.2018.

Research output: Contribution to journalReview ArticleScientificpeer-review

Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases. / Lehtinen, Tapio; Efimova, Elena; Santala, Suvi; Santala, Ville.

In: Microbial Cell Factories, Vol. 17, No. 1, 19, 08.02.2018.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism for inhibition of twinfilin by phosphoinositides. / Hakala, Markku; Kalimeri, Maria; Enkavi, Giray; Vattulainen, Ilpo; Lappalainen, Pekka.

In: Journal of Biological Chemistry, Vol. 293, No. 13, 01.01.2018, p. 4818-4829.

Research output: Contribution to journalArticleScientificpeer-review

A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. / Tienaho, Jenni; Poikulainen, Emmi; Sarjala, Tytti; Muilu-Mäkelä, Riina; Santala, Ville; Karp, Matti.

In: Photochemistry and Photobiology, Vol. 94, No. 6, 2018, p. 1273-1280.

Research output: Contribution to journalArticleScientificpeer-review

Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms. / Rinta-Kanto, J. M.; Pehkonen, K.; Sinkko, H.; Tamminen, M. V.; Timonen, S.

In: Canadian Journal of Microbiology, Vol. 64, No. 10, 2018, p. 716-726.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases. / Ojansivu, M.; Wang, X.; Hyväri, L.; Kellomäki, M.; Hupa, L.; Vanhatupa, S.; Miettinen, S.

In: European Cells and Materials, Vol. 35, 2018, p. 53-71.

Research output: Contribution to journalArticleScientificpeer-review

Differential processing in modality-specific Mauthner cell dendrites. / Medan, Violeta; Mäki-Marttunen, Tuomo; Sztarker, Julieta; Preuss, Thomas.

In: Journal of Physiology, Vol. 596, No. 4, 2018, p. 667-689.

Research output: Contribution to journalArticleScientificpeer-review

Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor : Experimental and artificial neural network model analysis. / Khanongnuch, Ramita; Di Capua, Francesco; Lakaniemi, Aino-Maija; Rene, Eldon R.; Lens, Piet N.L.

In: Process Biochemistry, Vol. 68, 2018, p. 171-181.

Research output: Contribution to journalArticleScientificpeer-review

Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer. / Rokade, Shalaka S.; Joshi, Komal A.; Mahajan, Ketakee; Patil, Saniya; Tomar, Geetanjali; Dubal, Dnyanesh S.; Parihar, Vijay Singh; Kitture, Rohini; Bellare, Jayesh R.; Ghosh, Sougata.

In: Bioinorganic Chemistry and Applications, Vol. 2018, 4924186, 2018.

Research output: Contribution to journalArticleScientificpeer-review

Knitted 3D Scaffolds of Polybutylene Succinate Support Human Mesenchymal Stem Cell Growth and Osteogenesis. / Ojansivu, Miina; Johansson, Laura; Vanhatupa, Sari; Tamminen, Ilmari; Hannula, Markus; Hyttinen, Jari; Kellomäki, Minna; Miettinen, Susanna.

In: Stem Cells International, Vol. 2018, 5928935, 2018.

Research output: Contribution to journalArticleScientificpeer-review

Mapping microscale wetting variations on biological and synthetic water-repellent surfaces. / Liimatainen, Ville; Vuckovac, Maja; Jokinen, Ville; Sariola, Veikko; Hokkanen, Matti J.; Zhou, Quan; Ras, Robin H.A.

In: Nature Communications, Vol. 8, No. 1, 1798, 01.12.2017.

Research output: Contribution to journalArticleScientificpeer-review

Lessons from the human genome project : Modesty, honesty, and realism. / Emmert-Streib, Frank; Dehmer, Matthias; Yli-Harja, Olli.

In: Frontiers in Genetics, Vol. 8, No. NOV, 184, 23.11.2017.

Research output: Contribution to journalComment/debateScientificpeer-review

Evaluation of optogenetic electrophysiology tools in human stem cell-derived cardiomyocytes. / Björk, Susann; Ojala, Elina A.; Nordström, Tommy; Ahola, Antti; Liljeström, Mikko; Hyttinen, Jari; Kankuri, Esko; Mervaala, Eero.

In: Frontiers in Physiology, Vol. 8, No. NOV, 884, 02.11.2017.

Research output: Contribution to journalArticleScientificpeer-review

Azopolymer photopatterning for directional control of angiogenesis. / Fedele, Chiara; De Gregorio, Maria; Netti, Paolo A.; Cavalli, Silvia; Attanasio, Chiara.

In: Acta Biomaterialia, Vol. 63, 01.11.2017, p. 317-325.

Research output: Contribution to journalArticleScientificpeer-review

Excessive aggregation of membrane proteins in the Martini model. / Javanainen, Matti; Martinez-Seara, Hector; Vattulainen, Ilpo.

In: PLoS ONE, Vol. 12, No. 11, e0187936, 01.11.2017.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different coating techniques on the properties of FucoPol films. / Ferreira, Ana R.V.; Haapanen, Janne; Mäkelä, Jyrki M.; Bratvold, Jon E.; Nilsen, Ola; Tuominen, Mikko; Alves, Vítor D.; Coelhoso, Isabel M.

In: International Journal of Biological Macromolecules, Vol. 103, 01.10.2017, p. 268-274.

Research output: Contribution to journalArticleScientificpeer-review

Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin. / Enkavi, Giray; Mikkolainen, Heikki; Güngör, Burçin; Ikonen, Elina; Vattulainen, Ilpo.

In: PLoS Computational Biology, Vol. 13, No. 10, e1005831, 01.10.2017.

Research output: Contribution to journalArticleScientificpeer-review

Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas. / Granberg, Kirsi J.; Annala, Matti; Lehtinen, Birgitta; Kesseli, Juha; Haapasalo, Joonas; Ruusuvuori, Pekka; Yli-Harja, Olli; Visakorpi, Tapio; Haapasalo, Hannu; Nykter, Matti; Zhang, Wei.

In: Neuro-Oncology, Vol. 19, No. 9, 01.09.2017, p. 1206-1216.

Research output: Contribution to journalArticleScientificpeer-review

Inhibition of Aβ Amyloid Growth and Toxicity by Silybins : The Crucial Role of Stereochemistry. / Sciacca, Michele F.M.; Romanucci, Valeria; Zarrelli, Armando; Monaco, Irene; Lolicato, Fabio; Spinella, Natalia; Galati, Clelia; Grasso, Giuseppe; D'Urso, Luisa; Romeo, Margherita; Diomede, Luisa; Salmona, Mario; Bongiorno, Corrado; Di Fabio, Giovanni; La Rosa, Carmelo; Milardi, Danilo.

In: ACS Chemical Neuroscience, Vol. 8, No. 8, 16.08.2017, p. 1767-1778.

Research output: Contribution to journalArticleScientificpeer-review

Nanofibrillar cellulose-alginate hydrogel coated surgical sutures as cell-carrier systems. / Laurén, Patrick; Somersalo, Petter; Pitkänen, Irina; Lou, Yan Ru; Urtti, Arto; Partanen, Jouni; Seppälä, Jukka; Madetoja, Mari; Laaksonen, Timo; Mäkitie, Antti; Yliperttula, Marjo.

In: PLoS ONE, Vol. 12, No. 8, e0183487, 01.08.2017.

Research output: Contribution to journalArticleScientificpeer-review

How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees. / Juchheim, Julia; Annighöfer, Peter; Ammer, Christian; Calders, Kim; Raumonen, Pasi; Seidel, Dominik.

In: TREES-STRUCTURE AND FUNCTION, Vol. 31, No. 5, 14.07.2017, p. 1723–1735.

Research output: Contribution to journalArticleScientificpeer-review

sgnesR : An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters. / Tripathi, Shailesh; Lloyd-Price, Jason; Ribeiro, Andre; Yli-Harja, Olli; Dehmer, Matthias; Emmert-Streib, Frank.

In: BMC Bioinformatics, Vol. 18, No. 1, 325, 04.07.2017.

Research output: Contribution to journalArticleScientificpeer-review

Atomistic fingerprint of hyaluronan–CD44 binding. / Vuorio, Joni; Vattulainen, Ilpo; Martinez-Seara, Hector.

In: PLoS Computational Biology, Vol. 13, No. 7, e1005663, 01.07.2017.

Research output: Contribution to journalArticleScientificpeer-review

The relationship between loading history and proximal femoral diaphysis cross-sectional geometry. / Niinimäki, Sirpa; Narra, Nathaniel; Härkönen, Laura; Abe, Shinya; Nikander, Riku; Hyttinen, Jari; Knüsel, Christopher; Sievänen, Harri.

In: American Journal of Human Biology, Vol. 29, No. 4, e22965, 01.07.2017.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics of a True Moving Bed separation process : Linear model identification and advanced process control. / Nogueira, Idelfonso B.R.; Ribeiro, Ana M.; Martins, Márcio A.F.; Rodrigues, Alírio E.; Koivisto, Hannu; Loureiro, José M.

In: Journal of Chromatography A, Vol. 1504, 30.06.2017.

Research output: Contribution to journalArticleScientificpeer-review

Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. / Mokkila, Sini; Postila, Pekka A.; Rissanen, Sami; Juhola, Hanna; Vattulainen, Ilpo; Róg, Tomasz.

In: ACS Chemical Neuroscience, Vol. 8, No. 6, 21.06.2017, p. 1242-1250.

Research output: Contribution to journalArticleScientificpeer-review

Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer. / Urbanucci, Alfonso; Barfeld, Stefan J.; Kytölä, Ville; Itkonen, Harri M.; Coleman, Ilsa M.; Vodák, Daniel; Sjöblom, Liisa; Sheng, Xia; Tolonen, Teemu; Minner, Sarah; Burdelski, Christoph; Kivinummi, Kati K.; Kohvakka, Annika; Kregel, Steven; Takhar, Mandeep; Alshalalfa, Mohammed; Davicioni, Elai; Erho, Nicholas; Lloyd, Paul; Karnes, R. Jeffrey; Ross, Ashley E.; Schaeffer, Edward M.; Vander Griend, Donald J.; Knapp, Stefan; Corey, Eva; Feng, Felix Y.; Nelson, Peter S.; Saatcioglu, Fahri; Knudsen, Karen E.; Tammela, Teuvo L.J.; Sauter, Guido; Schlomm, Thorsten; Nykter, Matti; Visakorpi, Tapio; Mills, Ian G.

In: Cell Reports, Vol. 19, No. 10, 06.06.2017, p. 2045-2059.

Research output: Contribution to journalArticleScientificpeer-review

Phase partitioning of GM1 and its bodipy-labeled analog determine their different binding to Cholera Toxin. / Rissanen, Sami; Grzybek, Michal; Orlowski, Adam; Róg, Tomasz; Cramariuc, Oana; Levental, Ilya; Eggeling, Christian; Sezgin, Erdinc; Vattulainen, Ilpo.

In: Frontiers in Physiology, Vol. 8, No. MAY, 252, 09.05.2017.

Research output: Contribution to journalArticleScientificpeer-review

Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas. / Lehtinen, Birgitta; Raita, Annina; Kesseli, Juha; Annala, Matti; Nordfors, Kristiina; Yli-Harja, Olli; Zhang, Wei; Visakorpi, Tapio; Nykter, Matti; Haapasalo, Hannu; Granberg, Kirsi J.

In: BMC Cancer, Vol. 17, No. 1, 310, 03.05.2017.

Research output: Contribution to journalArticleScientificpeer-review

Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation. / Manna, Moutusi; Javanainen, Matti; Martinez-Seara Monne, Hector; Gabius, Hans-Joachim; Rog, Tomasz; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1859, No. 5, 01.05.2017, p. 870-878.

Research output: Contribution to journalArticleScientificpeer-review

Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy. / Mah, Pei T.; Novakovic, Dunja; Saarinen, Jukka; van Landeghem, Stijn; Peltonen, Leena; Laaksonen, Timo; Isomäki, Antti; Strachan, Clare J.

In: Pharmaceutical Research, Vol. 34, No. 5, 05.2017, p. 957-970.

Research output: Contribution to journalArticleScientificpeer-review

Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. / Kahraman, Mehmet; Ozbay, Ayse; Yuksel, Handan; Solmaz, Ramazan; Demir, Baran; Caglayan, Humeyra.

In: Plasmonics, 05.04.2017, p. 1-11.

Research output: Contribution to journalArticleScientificpeer-review

Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging. / Higashino, Tomohiro; Nakatsuji, Hirotaka; Fukuda, Ryosuke; Okamoto, Haruki; Imai, Hirohiko; Matsuda, Tetsuya; Tochio, Hidehito; Shirakawa, Masahiro; Tkachenko, Nikolai V.; Hashida, Mitsuru; Murakami, Tatsuya; Imahori, Hiroshi.

In: ChemBioChem, Vol. 18, No. 10, 24.03.2017, p. 951-959.

Research output: Contribution to journalArticleScientificpeer-review

Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition. / Bilkova, Eva; Pleskot, Roman; Rissanen, Sami; Sun, Simou; Czogalla, Aleksander; Cwiklik, Lukasz; Róg, Tomasz; Vattulainen, Ilpo; Cremer, Paul S.; Jungwirth, Pavel; Coskun, Ünal.

In: Journal of the American Chemical Society, Vol. 139, No. 11, 22.03.2017, p. 4019-4024.

Research output: Contribution to journalArticleScientificpeer-review

Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains. / Milani, Roberto; Houbenov, Nikolay; Fernandez-Palacio, Francisco; Cavallo, Gabriella; Luzio, Alessandro; Haataja, Johannes; Giancane, Gabriele; Saccone, Marco; Priimägi, Arri; Metrangolo, Pierangelo; Ikkala, Olli.

In: CheM, Vol. 2, No. 3, 09.03.2017, p. 417-426.

Research output: Contribution to journalArticleScientificpeer-review

Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ : Novel Mechanisms of Function and Pathogenesis. / Euro, Liliya; Haapanen, Outi; Róg, Tomasz; Vattulainen, Ilpo; Suomalainen, Anu; Sharma, Vivek.

In: Biochemistry, Vol. 56, No. 9, 07.03.2017, p. 1227-1238.

Research output: Contribution to journalArticleScientificpeer-review

Twin-layer biosensor for real-time monitoring of alkane metabolism. / Lehtinen, Tapio; Santala, Ville; Santala, Suvi.

In: FEMS Microbiology Letters, Vol. 364, No. 6, fnx053, 01.03.2017.

Research output: Contribution to journalArticleScientificpeer-review

Membrane cholesterol access into a G-protein-coupled receptor. / Guixà-González, Ramon; Albasanz, José L.; Rodriguez-Espigares, Ismael; Pastor, Manuel; Sanz, Ferran; Martí-Solano, Maria; Manna, Moutusi; Martinez-Seara, Hector; Hildebrand, Peter W.; Martín, Mairena; Selent, Jana.

In: Nature Communications, Vol. 8, 14505, 21.02.2017.

Research output: Contribution to journalArticleScientificpeer-review

Magnetic routing of light-induced waveguides. / Izdebskaya, Yana; Shvedov, Vladlen; Assanto, Gaetano; Krolikowski, Wieslaw.

In: Nature Communications, Vol. 8, 14452, 15.02.2017.

Research output: Contribution to journalArticleScientificpeer-review

The use of mathematical modeling for the development of a low cost fuzzy gain schedule neutralization control system. / Sislian, Rodrigo; da Silva, Flávio Vasconcelos; Gedraite, Rubens; Jokinen, Heikki; Rajan, Dhanesh Kattipparambil.

Transactions on Engineering Technologies: World Congress on Engineering and Computer Science 2015. Springer Singapore, 2017. p. 525-539.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Multivariate statistical analysis for the identification of potential seafood spoilage indicators. / Kuuliala, L.; Abatih, E.; Ioannidis, A. G.; Vanderroost, M.; De Meulenaer, B.; Ragaert, P.; Devlieghere, F.

In: Food Control, Vol. 84, 01.02.2017, p. 49-60.

Research output: Contribution to journalArticleScientificpeer-review

Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells. / Balanta, M. A G; Orsi Gordo, V.; Carvalho, A. R H; Puustinen, J.; Alghamdi, H. M.; Henini, M.; Galeti, H. V A; Guina, M.; Galvão Gobato, Y.

In: Journal of Luminescence, Vol. 182, 02.2017, p. 49-52.

Research output: Contribution to journalArticleScientificpeer-review

GSAR : Bioconductor package for Gene Set analysis in R. / Rahmatallah, Yasir; Zybailov, Boris; Emmert-Streib, Frank; Glazko, Galina.

In: BMC Bioinformatics, Vol. 18, No. 1, 61, 24.01.2017.

Research output: Contribution to journalArticleScientificpeer-review

Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro. / Hyysalo, Anu; Ristola, Mervi; Joki, Tiina; Honkanen, Mari; Vippola, Minnamari; Narkilahti, Susanna.

In: MACROMOLECULAR BIOSCIENCE, Vol. 17, No. 7, 1600517, 2017.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle. / Grabon, Aby; Orłowski, Adam; Tripathi, Ashutosh; Vuorio, Joni; Javanainen, Matti; Róg, Tomasz; Lönnfors, Max; McDermott, Mark I.; Siebert, Garland; Somerharju, Pentti; Vattulainen, Ilpo; Bankaitis, Vytas A.

In: Journal of Biological Chemistry, Vol. 292, No. 35, 2017, p. 14438-14455.

Research output: Contribution to journalArticleScientificpeer-review

Electrical Contacts in SOI MEMS Using Aerosol Jet Printing. / Khorramdel, Behnam; Torkkeli, Altti; Mäntysalo, Matti.

In: IEEE Journal of the Electron Devices Society, Vol. 6, 2017, p. 34-40.

Research output: Contribution to journalArticleScientificpeer-review

Extracting the strongest signals from omics data : Differentially expressed pathways and beyond. / Glazko, Galina; Rahmatallah, Yasir; Zybailov, Boris; Emmert-Streib, Frank.

Methods in Molecular Biology. HUMANA PRESS INC, 2017. p. 125-159 (Methods in Molecular Biology; Vol. 1613).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Metastasis detection from whole slide images using local features and random forests. / Valkonen, Mira; Kartasalo, Kimmo; Liimatainen, Kaisa; Nykter, Matti; Latonen, Leena; Ruusuvuori, Pekka.

In: Cytometry Part A, Vol. 91, No. 6, 2017, p. 555-565.

Research output: Contribution to journalArticleScientificpeer-review

Oxysterols Versus Cholesterol in Model Neuronal Membrane. I. The Case of 7-Ketocholesterol. The Langmuir Monolayer Study. / Wnętrzak, Anita; Makyła-Juzak, Katarzyna; Filiczkowska, Anna; Kulig, Waldemar; Dynarowicz-Łątka, Patrycja.

In: Journal of Membrane Biology, Vol. 250, No. 5, 2017, p. 553–564.

Research output: Contribution to journalArticleScientificpeer-review

Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex. / Lahbib, Ikram; Valkonen, Arto; Rzaigui, Mohamed; Smirani, Wajda.

In: Journal of Cluster Science, Vol. 28, No. 4, 2017, p. 2239–2252.

Research output: Contribution to journalArticleScientificpeer-review

The Association Between Liver and Tumor [18F]FDG Uptake in Patients with Diffuse Large B Cell Lymphoma During Chemotherapy. / Wu, Xingchen; Bhattarai, Abhisek; Korkola, Pasi; Pertovaara, Hannu; Eskola, Hannu; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Molecular Imaging and Biology, Vol. 19, No. 5, 2017, p. 787–794.

Research output: Contribution to journalArticleScientificpeer-review

The Integrin Receptor in Biologically Relevant Bilayers : Insights from Molecular Dynamics Simulations. / Kalli, Antreas C.; Rog, Tomasz; Vattulainen, Ilpo; Campbell, Iain D.; Sansom, Mark S P.

In: Journal of Membrane Biology, Vol. 250, 2017, p. 337-351.

Research output: Contribution to journalArticleScientificpeer-review

Transcription Initiation Controls Skewness of the Distribution of Intervals Between RNA Productions. / Kandavalli, Vinodh; Startceva, Sofia; Sanches Ribeiro, Andre.

31st European Simulation and Modelling Conference: ESM'2017. ed. / Goncalves Paulo J.S. Portugal : EUROSIS, 2017. p. 397-403.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Abstract: Direction as a vibration loading parameter in bone tissue engineering. / Halonen, Heidi; Kyllönen, Laura; Ihalainen, Teemu O.; Miettinen, Susanna; Hyttinen, Jari.

2016. Paper presented at BioMediTech Research Day 2016, Tampere, Finland.

Research output: Other conference contributionPaper, poster or abstractScientific

SamExploreR : Exploring reproducibility and robustness of RNA-seq results based on SAM files. / Stupnikov, Alexey; Tripathi, Shailesh; De Matos Simoes, Ricardo; McArt, Darragh; Salto-Tellez, Manuel; Glazko, Galina; Dehmer, Matthias; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 32, No. 21, 01.11.2016, p. 3345-3347.

Research output: Contribution to journalArticleScientificpeer-review

Increased survival rate by local release of diclofenac in a murine model of recurrent oral carcinoma. / Will, Olga Maria; Purcz, Nicolai; Chalaris, Athena; Heneweer, Carola; Boretius, Susann; Purcz, Larissa; Nikkola, Lila; Ashammakhi, Nureddin; Kalthoff, Holger; Glüer, Claus Christian; Wiltfang, Jörg; Açil, Yahya; Tiwari, Sanjay.

In: International Journal of Nanomedicine, Vol. 11, 12.10.2016, p. 5311-5321.

Research output: Contribution to journalArticleScientificpeer-review

Effects of σ factor competition are promoter initiation kinetics dependent. / Kandavalli, Vinodh K.; Tran, Huy; Ribeiro, Andre S.

In: Biochimica et Biophysica Acta: Gene Regulatory Mechanisms, Vol. 1859, No. 10, 01.10.2016, p. 1281-1288.

Research output: Contribution to journalArticleScientificpeer-review

Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1. / Kuleta, Patryk; Sarewicz, Marcin; Postila, Pekka; Róg, Tomasz; Osyczka, Artur.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1857, No. 10, 01.10.2016, p. 1661-1668.

Research output: Contribution to journalArticleScientificpeer-review

Lipid membranes : Theory and simulations bridged to experiments. / Vattulainen, Ilpo; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 01.10.2016, p. 2251-2253.

Research output: Contribution to journalEditorialScientificpeer-review

Efficient preparation and analysis of membrane and membrane protein systems. / Javanainen, Matti; Martinez-Seara, Hector.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 10.2016, p. 2468-2482.

Research output: Contribution to journalArticleScientificpeer-review

Functionalized lipids and surfactants for specific applications. / Kepczynski, Mariusz; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 10, 10.2016, p. 2362-2379.

Research output: Contribution to journalArticleScientificpeer-review

Controlling the motion of multiple objects on a Chladni plate. / Zhou, Quan; Sariola, Veikko; Latifi, Kourosh; Liimatainen, Ville.

In: Nature Communications, Vol. 7, 12764, 09.09.2016.

Research output: Contribution to journalArticleScientificpeer-review

Current densities and total contact currents during forest clearing tasks under 400kV power lines. / Korpinen, Leena; Kuisti, Harri; Elovaara, Jarmo.

In: Bioelectromagnetics, Vol. 37, No. 6, 01.09.2016, p. 423-428.

Research output: Contribution to journalArticleScientificpeer-review

Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. / Kaurola, Petri; Sharma, Vivek; Vonk, Amanda; Vattulainen, Ilpo; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 9, 01.09.2016, p. 2116-2122.

Research output: Contribution to journalArticleScientificpeer-review

Selenium : environmental significance, pollution, and biological treatment technologies. / Tan, Lea Chua; Nancharaiah, Yarlagadda V.; van Hullebusch, Eric D.; Lens, Piet N L.

In: Biotechnology Advances, Vol. 34, No. 5, 01.09.2016, p. 886-907.

Research output: Contribution to journalReview ArticleScientificpeer-review

Against dataism and for data sharing of big biomedical and clinical data with research parasites. / Emmert-Streib, Frank; Dehmer, Matthias; Yli-Harja, Olli.

In: Frontiers in Genetics, Vol. 7, No. AUG, 154, 31.08.2016.

Research output: Contribution to journalComment/debateScientificpeer-review

The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. / Sharma, Vivek; Wikström, Mårten.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1857, No. 8, 08.2016, p. 1111-1115.

Research output: Contribution to journalArticleScientificpeer-review

Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells. / Halonen, Heidi; Kyllönen, Laura; Ihalainen, Teemu O.; Miettinen, Susanna; Hyttinen, Jari.

2016. Paper presented at Congress of the European Society of biomechanics ESB2016, Lyon, France.

Research output: Other conference contributionPaper, poster or abstractScientific

Bioluminescence-based system for rapid detection of natural transformation. / Santala, Ville; Karp, Matti; Santala, Suvi.

In: FEMS Microbiology Letters, Vol. 363, No. 13, fnw125, 01.07.2016.

Research output: Contribution to journalArticleScientificpeer-review

Effect of particle size and dispersion status on cytotoxicity and genotoxicity of zinc oxide in human bronchial epithelial cells. / Roszak, Joanna; Catalán, Julia; Järventaus, Hilkka; Lindberg, Hanna K.; Suhonen, Satu; Vippola, Minnamari; Stepnik, Maciej; Norppa, Hannu.

In: Mutation Research: Genetic Toxicology and Environmental Mutagenesis, Vol. 805, 01.07.2016, p. 7-18.

Research output: Contribution to journalArticleScientificpeer-review

Indocyanine Green-Loaded Liposomes for Light-Triggered Drug Release. / Lajunen, Tatu; Kontturi, Leena-Stiina; Viitala, Lauri; Manna, Moutusi; Cramariuc, Oana; Róg, Tomasz; Bunker, Alex; Laaksonen, Timo; Viitala, Tapani; Murtomäki, Lasse; Urtti, Arto.

In: Molecular Pharmaceutics, Vol. 13, No. 6, 06.06.2016, p. 2095-2107.

Research output: Contribution to journalArticleScientificpeer-review

Robust statistical approaches for RSS-based floor detection in indoor localization. / Razavi, Alireza; Valkama, Mikko; Lohan, Elena Simona.

In: Sensors, Vol. 16, No. 6, 793, 01.06.2016.

Research output: Contribution to journalArticleScientificpeer-review

Characterizing rate limiting steps in transcription from RNA production times in live cells. / Häkkinen, Antti; Ribeiro, Andre S.

In: Bioinformatics, Vol. 32, No. 9, 01.05.2016, p. 1346-1352.

Research output: Contribution to journalArticleScientificpeer-review

The need for formally defining "modern medicine" by means of experimental design. / Emmert-Streib, Frank; Tuomisto, Lauri; Yli-Harja, Olli.

In: Frontiers in Genetics, Vol. 7, No. APR, 60, 20.04.2016.

Research output: Contribution to journalArticleScientificpeer-review

Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering. / Vuornos, Kaisa; Björninen, Miina; Talvitie, Elina; Paakinaho, Kaarlo; Kellomäki, Minna; Huhtala, Heini; Miettinen, Susanna; Seppänen-Kaijansinkko, Riitta; Haimi, Suvi.

In: Tissue Engineering Part A, Vol. 22, No. 5-6, 01.03.2016, p. 513-523.

Research output: Contribution to journalArticleScientificpeer-review

Texture descriptors ensembles enable image-based classification of maturation of human stem cell-derived retinal pigmented epithelium. / Nanni, Loris; Paci, Michelangelo; Dos Santos, Florentino Luciano Caetano; Skottman, Heli; Juuti-Uusitalo, Kati; Hyttinen, Jari.

In: PLoS ONE, Vol. 11, No. 2, e0149399, 01.02.2016.

Research output: Contribution to journalArticleScientificpeer-review

Cell-based bioreporter assay coupled to HPLC micro-fractionation in the evaluation of antimicrobial properties of the basidiomycete fungus Pycnoporus cinnabarinus. / Järvinen, Päivi; Nybond, Susanna; Marcourt, Laurence; Ferreira Queiroz, Emerson; Wolfender, Jean Luc; Mettälä, Aila; Karp, Matti; Vuorela, Heikki; Vuorela, Pia; Hatakka, Annele; Tammela, Päivi.

In: Pharmaceutical Biology, Vol. 54, No. 6, 21.01.2016, p. 1-8.

Research output: Contribution to journalArticleScientificpeer-review

Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. / Nancharaiah, Y. V.; Mohan, S. Venkata; Lens, P. N L.

In: Trends in Biotechnology, Vol. 34, No. 2, 2016, p. 137-155.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol oxidation products and their biological importance. / Kulig, Waldemar; Cwiklik, Lukasz; Jurkiewicz, Piotr; Rog, Tomasz; Vattulainen, Ilpo.

In: Chemistry and Physics of Lipids, Vol. 199, 2016, p. 144-160.

Research output: Contribution to journalArticleScientificpeer-review

Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating. / Lahti, Johanna; Lavonen, Juho; Lahtinen, Kimmo; Johansson, Petri; Seppänen, Tarja; Cameron, David C.

TAPPI International Conference on Nanotechnology for Renewable Materials 2016. Vol. 2 TAPPI Press, 2016. p. 684-706.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol. / Teppola, Heidi; Sarkanen, Jertta Riina; Jalonen, Tuula O.; Linne, Marja-Leena.

In: Neurochemical Research, Vol. 41, No. 4, 2016, p. 731-747.

Research output: Contribution to journalArticleScientificpeer-review

Non-Brownian diffusion in lipid membranes : Experiments and simulations. / Metzler, R.; Jeon, J. H.; Cherstvy, A. G.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 215, 2016, p. 173–185.

Research output: Contribution to journalReview ArticleScientificpeer-review

Robustness of the process of nucleoid exclusion of protein aggregates in Escherichia coli. / Neeli-Venkata, Ramakanth; Martikainen, Antti; Gupta, Abhishekh; Goncalves, Nadia; Fonseca, Jose; Ribeiro, Andre S.

In: Journal of Bacteriology, Vol. 198, No. 6, 2016, p. 898-906.

Research output: Contribution to journalArticleScientificpeer-review

Role of charged lipids in membrane structures : Insight given by simulations. / Pöyry, Sanja; Vattulainen, Ilpo.

In: Biochimica et Biophysica Acta: Biomembranes, 2016, p. 2322–2333.

Research output: Contribution to journalArticleScientificpeer-review

Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality. / Saarinen, J. J.; Valtakari, D.; Bollström, R.; Stepien, M.; Haapanen, J.; Mäkelä, J. M.; Toivakka, M.

Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. Vol. 4 TechConnect, 2016. p. 47-50.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations. / Rog, Tomasz; Koivuniemi, Artturi.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1858, No. 1, 2016, p. 97-103.

Research output: Contribution to journalArticleScientificpeer-review

The Effects of Pharmacological Compounds on Beat Rate Variations in Human Long QT-Syndrome Cardiomyocytes. / Kuusela, Jukka; Kim, Jiyeong; Räsänen, Esa; Aalto-Setälä, Katriina.

In: Stem Cell Reviews and Reports, Vol. 12, No. 6, 2016, p. 698–707.

Research output: Contribution to journalArticleScientificpeer-review

Urinary thrombomodulin levels were significantly higher following occupational exposure to chemicals, in the presence of dipstick protein, but not in the presence of dipstick blood. / Ruddock, Mark W.; De Matos Simoes, Ricardo; O'Rourke, Declan; Duggan, Brian; Stevenson, Michael; O'Kane, Hugh F.; Curry, David; Abogunrin, Funso; Emmert-Streib, Frank; Reid, Cherith N.; Maxwell, Perry; Arthur, Ken; Mallon, Michael; Carson, Gail; Kennedy, Grace; Williamson, Kate E.

In: Biology and Medicine, Vol. 8, No. 1, 1000260, 2016.

Research output: Contribution to journalArticleScientificpeer-review

Validity of parameters in static linear testing of flexor tendon repair. / Linnanmäki, Lasse; Göransson, Harry; Havulinna, Jouni; Sippola, Petteri; Karjalainen, Teemu; Leppänen, Olli V.

In: Journal of Biomechanics, Vol. 49, No. 13, 2016, p. 2785–2790.

Research output: Contribution to journalArticleScientificpeer-review

A Comparative View on Easy to Deploy non-Integrating Methods for Patient-Specific iPSC Production. / Manzini, Stefano; Viiri, Leena E.; Marttila, Suvi; Aalto-Setälä, Katriina.

In: Stem Cell Reviews and Reports, Vol. 11, No. 6, 01.12.2015, p. 900-908.

Research output: Contribution to journalArticleScientificpeer-review

A new algorithm to improve assessment of cortical bone geometry in pQCT. / Cervinka, Tomas; Sievänen, Harri; Lala, Deena; Cheung, Angela M.; Giangregorio, Lora; Hyttinen, Jari.

In: Bone, Vol. 81, 01.12.2015, p. 721-730.

Research output: Contribution to journalArticleScientificpeer-review

Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells. / Vanhatupa, Sari; Ojansivu, Miina; Autio, Reija; Juntunen, Miia; Miettinen, Susanna.

In: Stem Cells Translational Medicine, Vol. 4, No. 12, 01.12.2015, p. 1391-1402.

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition : Medical exposures, including hormone therapy, and cancer. / Friis, Søren; Kesminiene, Ausrele; Espina, Carolina; Auvinen, Anssi; Straif, Kurt; Schüz, Joachim.

In: CANCER EPIDEMIOLOGY, Vol. 39, 01.12.2015, p. S107-S119.

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition : Ionising and non-ionising radiation and cancer. / McColl, Neil; Auvinen, Anssi; Kesminiene, Ausrele; Espina, Carolina; Erdmann, Friederike; de Vries, Esther; Greinert, Rüdiger; Harrison, John; Schüz, Joachim.

In: CANCER EPIDEMIOLOGY, Vol. 39, 01.12.2015, p. S93-S100.

Research output: Contribution to journalArticleScientificpeer-review

European Code against Cancer 4th Edition : Ultraviolet radiation and cancer. / Greinert, Rüdiger; de Vries, Esther; Erdmann, Friederike; Espina, Carolina; Auvinen, Anssi; Kesminiene, Ausrele; Schüz, Joachim.

In: CANCER EPIDEMIOLOGY, Vol. 39, 01.12.2015, p. S75-S83.

Research output: Contribution to journalArticleScientificpeer-review

Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. / Jia, Li; Sun, Zhonghe; Wu, Xiaolin; Misteli, Tom; Sharma, Vivek.

In: Genomics Data, Vol. 6, 01.12.2015, p. 277-279.

Research output: Contribution to journalArticleScientificpeer-review

Improving the Immunogenicity of the Mycobacterium bovis BCG Vaccine by Non-Genetic Bacterial Surface Decoration Using the Avidin-Biotin System. / Liao, Ting Yu Angela; Lau, Alice; Joseph, Sunil; Hytönen, Vesa; Hmama, Zakaria.

In: PLoS ONE, Vol. 10, No. 12, e0145833, 01.12.2015.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates. / Kannisto, Matti S.; Mangayil, Rahul K.; Shrivastava-Bhattacharya, Ankita; Pletschke, Brett I.; Karp, Matti T.; Santala, Ville P.

In: Biotechnology for Biofuels, Vol. 8, No. 1, 198, 01.12.2015.

Research output: Contribution to journalArticleScientificpeer-review

Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. / Ravi, Aruna; Luthra, Antriksh; Teixeira, Fernando L.; Berger, Paul R.; Coe, James V.

In: Plasmonics, Vol. 10, No. 6, 01.12.2015, p. 1505-1512.

Research output: Contribution to journalArticleScientificpeer-review

Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. / Marjakangas, Jatta M.; Chen, Chun Yen; Lakaniemi, Aino Maija; Puhakka, Jaakko A.; Whang, Liang Ming; Chang, Jo Shu.

In: Biochemical Engineering Journal, Vol. 103, 05.11.2015, p. 177-184.

Research output: Contribution to journalArticleScientificpeer-review

The Molecular Taxonomy of Primary Prostate Cancer. / Abeshouse, Adam; Ahn, Jaeil; Akbani, Rehan; Ally, Adrian; Amin, Samirkumar; Andry, Christopher D.; Annala, Matti; Aprikian, Armen; Armenia, Joshua; Arora, Arshi; Auman, J. Todd; Balasundaram, Miruna; Balu, Saianand; Barbieri, Christopher E.; Bauer, Thomas; Benz, Christopher C.; Bergeron, Alain; Beroukhim, Rameen; Berrios, Mario; Bivol, Adrian; Bodenheimer, Tom; Boice, Lori; Bootwalla, Moiz S.; Borges Dos Reis, Rodolfo; Boutros, Paul C.; Bowen, Jay; Bowlby, Reanne; Boyd, Jeffrey; Bradley, Robert K.; Breggia, Anne; Brimo, Fadi; Bristow, Christopher A.; Brooks, Denise; Broom, Bradley M.; Bryce, Alan H.; Bubley, Glenn; Burks, Eric; Butterfield, Yaron S N; Button, Michael; Canes, David; Carlotti, Carlos G.; Carlsen, Rebecca; Carmel, Michel; Carroll, Peter R.; Carter, Scott L.; Cartun, Richard; Carver, Brett S.; Chan, June M.; Chang, Matthew T.; Chen, Yu; Cherniack, Andrew D.; Chevalier, Simone; Chin, Lynda; Cho, Juok; Chu, Andy; Chuah, Eric; Chudamani, Sudha; Cibulskis, Kristian; Ciriello, Giovanni; Clarke, Amanda; Cooperberg, Matthew R.; Corcoran, Niall M.; Costello, Anthony J.; Cowan, Janet; Crain, Daniel; Curley, Erin; David, Kerstin; Demchok, John A.; Demichelis, Francesca; Dhalla, Noreen; Dhir, Rajiv; Doueik, Alexandre; Drake, Bettina; Dvinge, Heidi; Dyakova, Natalya; Felau, Ina; Ferguson, Martin L.; Frazer, Scott; Freedland, Stephen; Fu, Yao; Gabriel, Stacey B.; Gao, Jianjiong; Gardner, Johanna; Gastier-Foster, Julie M.; Gehlenborg, Nils; Gerken, Mark; Gerstein, Mark B.; Getz, Gad; Godwin, Andrew K.; Gopalan, Anuradha; Graefen, Markus; Graim, Kiley; Gribbin, Thomas; Guin, Ranabir; Gupta, Manaswi; Hadjipanayis, Angela; Haider, Syed; Hamel, Lucie; Hayes, D. Neil; Heiman, David I.; Hess, Julian; Hoadley, Katherine A.; Holbrook, Andrea H.; Holt, Robert A.; Holway, Antonia; Hovens, Christopher M.; Hoyle, Alan P.; Huang, Mei; Hutter, Carolyn M.; Ittmann, Michael; Iype, Lisa; Jefferys, Stuart R.; Jones, Corbin D.; Jones, Steven J M; Juhl, Hartmut; Kahles, Andre; Kane, Christopher J.; Kasaian, Katayoon; Kerger, Michael; Khurana, Ekta; Kim, Jaegil; Klein, Robert J.; Kucherlapati, Raju; Lacombe, Louis; Ladanyi, Marc; Lai, Phillip H.; Laird, Peter W.; Lander, Eric S.; Latour, Mathieu; Lawrence, Michael S.; Lau, Kevin; Lebien, Tucker; Lee, Darlene; Lee, Semin; Lehmann, Kjong Van; Leraas, Kristen M.; Leshchiner, Ignaty; Leung, Robert; Libertino, John A.; Lichtenberg, Tara M.; Lin, Pei; Linehan, W. Marston; Ling, Shiyun; Lippman, Scott M.; Liu, Jia; Liu, Wenbin; Lochovsky, Lucas; Loda, Massimo; Logothetis, Christopher; Lolla, Laxmi; Longacre, Teri; Lu, Yiling; Luo, Jianhua; Ma, Yussanne; Mahadeshwar, Harshad S.; Mallery, David; Mariamidze, Armaz; Marra, Marco A.; Mayo, Michael; McCall, Shannon; McKercher, Ginette; Meng, Shaowu; Mes-Masson, Anne Marie; Merino, Maria J.; Meyerson, Matthew; Mieczkowski, Piotr A.; Mills, Gordon B.; Shaw, Kenna R Mills; Minner, Sarah; Moinzadeh, Alireza; Moore, Richard A.; Morris, Scott; Morrison, Carl; Mose, Lisle E.; Mungall, Andrew J.; Murray, Bradley A.; Myers, Jerome B.; Naresh, Rashi; Nelson, Joel; Nelson, Mark A.; Nelson, Peter S.; Newton, Yulia; Noble, Michael S.; Noushmehr, Houtan; Nykter, Matti; Pantazi, Angeliki; Parfenov, Michael; Park, Peter J.; Parker, Joel S.; Paulauskis, Joseph; Penny, Robert; Perou, Charles M.; Piché, Alain; Pihl, Todd; Pinto, Peter A.; Prandi, Davide; Protopopov, Alexei; Ramirez, Nilsa C.; Rao, Arvind; Rathmell, W. Kimryn; Rätsch, Gunnar; Ren, Xiaojia; Reuter, Victor E.; Reynolds, Sheila M.; Rhie, Suhn K.; Rieger-Christ, Kimberly; Roach, Jeffrey; Robertson, A. Gordon; Robinson, Brian; Rubin, Mark A.; Saad, Fred; Sadeghi, Sara; Saksena, Gordon; Saller, Charles; Salner, Andrew; Sanchez-Vega, Francisco; Sander, Chris; Sandusky, George; Sauter, Guido; Sboner, Andrea; Scardino, Peter T.; Scarlata, Eleonora; Schein, Jacqueline E.; Schlomm, Thorsten; Schmidt, Laura S.; Schultz, Nikolaus; Schumacher, Steven E.; Seidman, Jonathan; Neder, Luciano; Seth, Sahil; Sharp, Alexis; Shelton, Candace; Shelton, Troy; Shen, Hui; Shen, Ronglai; Sherman, Mark; Sheth, Margi; Shi, Yan; Shih, Juliann; Shmulevich, Ilya; Simko, Jeffry; Simon, Ronald; Simons, Janae V.; Sipahimalani, Payal; Skelly, Tara; Sofia, Heidi J.; Soloway, Matthew G.; Song, Xingzhi; Sorcini, Andrea; Sougnez, Carrie; Stepa, Serghei; Stewart, Chip; Stewart, John; Stuart, Joshua M.; Sullivan, Travis B.; Sun, Charlie; Sun, Huandong; Tam, Angela; Tan, Donghui; Tang, Jiabin; Tarnuzzer, Roy; Tarvin, Katherine; Taylor, Barry S.; Teebagy, Patrick; Tenggara, Imelda; Têtu, Bernard; Tewari, Ashutosh; Thiessen, Nina; Thompson, Timothy; Thorne, Leigh B.; Tirapelli, Daniela P.; Tomlins, Scott A.; Trevisan, Felipe Amstalden; Troncoso, Patricia; True, Lawrence D.; Tsourlakis, Maria Christina; Tyekucheva, Svitlana; Van Allen, Eliezer; Van Den Berg, David J.; Veluvolu, Umadevi; Verhaak, Roel; Vocke, Cathy D.; Voet, Doug; Wan, Yunhu; Wang, Qingguo; Wang, Wenyi; Wang, Zhining; Weinhold, Nils; Weinstein, John N.; Weisenberger, Daniel J.; Wilkerson, Matthew D.; Wise, Lisa; Witte, John; Wu, Chia Chin; Wu, Junyuan; Wu, Ye; Xu, Andrew W.; Yadav, Shalini S.; Yang, Liming; Yang, Lixing; Yau, Christina; Ye, Huihui; Yena, Peggy; Zeng, Thomas; Zenklusen, Jean C.; Zhang, Hailei; Zhang, Jianhua; Zhang, Jiashan; Zhang, Wei; Zhong, Yi; Zhu, Kelsey; Zmuda, Erik.

In: Cell, Vol. 163, No. 4, 05.11.2015, p. 1011-1025.

Research output: Contribution to journalArticleScientificpeer-review

A BRCA1-interacting lncRNA regulates homologous recombination. / Sharma, Vivek; Khurana, Simran; Kubben, Nard; Abdelmohsen, Kotb; Oberdoerffer, Philipp; Gorospe, Myriam; Misteli, Tom.

In: EMBO REPORTS, Vol. 16, No. 11, 01.11.2015, p. 1520-1534.

Research output: Contribution to journalArticleScientificpeer-review

Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery. / Zorzi, Giovanni K.; Párraga, Jenny E.; Seijo, Begoña; Sanchez, Alejandro.

In: Colloids and Surfaces B: Biointerfaces, Vol. 135, 01.11.2015, p. 533-541.

Research output: Contribution to journalArticleScientificpeer-review

Submolecular Plasticization Induced by Photons in Azobenzene Materials. / Vapaavuori, Jaana; Laventure, Audrey; Bazuin, C. Geraldine; Lebel, Olivier; Pellerin, Christian.

In: Journal of the American Chemical Society, Vol. 137, No. 42, 28.10.2015, p. 13510-13517.

Research output: Contribution to journalArticleScientificpeer-review

Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism. / Ryödi, Essi; Metso, Saara; Jaatinen, Pia; Huhtala, Heini; Saaristo, Rauni; Välimäki, Matti; Auvinen, Anssi.

In: Journal of Clinical Endocrinology and Metabolism, Vol. 100, No. 10, 01.10.2015, p. 3710-3717.

Research output: Contribution to journalArticleScientificpeer-review

Effects of single and fractionated irradiation on natural killer cell populations : Radiobiological characteristics of viability and cytotoxicity in vitro. / Hietanen, Tenho; Pitkänen, Maunu; Kapanen, Mika; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Anticancer Research, Vol. 35, No. 10, 01.10.2015, p. 5193-5200.

Research output: Contribution to journalArticleScientificpeer-review

ESD qualification data used as the basis for building electrostatic discharge protected areas. / Tamminen, Pasi; Viheriäkoski, Toni; Sydänheimo, Lauri; Ukkonen, Leena.

In: Journal of Electrostatics, Vol. 77, 3024, 01.10.2015, p. 174-181.

Research output: Contribution to journalArticleScientificpeer-review

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans. / Al Olama, Ali Amin; Dadaev, Tokhir; Hazelett, Dennis J.; Li, Qiuyan; Leongamornlert, Daniel; Saunders, Edward J.; Stephens, Sarah; Cieza-Borrella, Clara; Whitmore, Ian; Garcia, Sara Benlloch; Giles, Graham G.; Southey, Melissa C.; Fitzgerald, Liesel; Gronberg, Henrik; Wiklund, Fredrik; Aly, Markus; Henderson, Brian E.; Schumacher, Fredrick; Haiman, Christopher A.; Schleutker, Johanna; Wahlfors, Tiina; Tammela, Teuvo L.; Nordestgaard, Børge G.; Key, Tim J.; Travis, Ruth C.; Neal, David E.; Donovan, Jenny L.; Hamdy, Freddie C.; Pharoah, Paul; Pashayan, Nora; Khaw, Kay Tee; Stanford, Janet L.; Thibodeau, Stephen N.; Mcdonnell, Shannon K.; Schaid, Daniel J.; Maier, Christiane; Vogel, Walther; Luedeke, Manuel; Herkommer, Kathleen; Kibel, Adam S.; Cybulski, Cezary; Wokolorczyk, Dominika; Kluzniak, Wojciech; Cannon-Albright, Lisa; Brenner, Hermann; Butterbach, Katja; Arndt, Volker; Park, Jong Y.; Sellers, Thomas; Lin, Hui Yi; Slavov, Chavdar; Kaneva, Radka; Mitev, Vanio; Batra, Jyotsna; Clements, Judith A.; Spurdle, Amanda; Teixeira, Manuel R.; Paulo, Paula; Maia, Sofia; Pandha, Hardev; Michael, Agnieszka; Kierzek, Andrzej; Govindasami, Koveela; Guy, Michelle; Lophatonanon, Artitaya; Muir, Kenneth; Viñuela, Ana; Brown, Andrew A.; Freedman, Mathew; Conti, David V.; Easton, Douglas; Coetzee, Gerhard A.; Eeles, Rosalind A.; Kote-Jarai, Zsofia.

In: HUMAN MOLECULAR GENETICS, Vol. 24, No. 19, ddv203, 01.10.2015, p. 5589-5602.

Research output: Contribution to journalArticleScientificpeer-review

Transcriptome sequencing reveals PCAT5 as a Novel ERG-Regulated long Noncoding RNA in prostate cancer. / Ylipää, Antti; Kivinummi, Kati; Kohvakka, Annika; Annala, Matti; Latonen, Leena; Scaravilli, Mauro; Kartasalo, Kimmo; Leppänen, Simo Pekka; Karakurt, Serdar; Seppäla, Janne; Yli-Harja, Olli; Tammela, Teuvo L J; Zhang, Wei; Visakorpi, Tapio; Nykter, Matti.

In: Cancer Research, Vol. 75, No. 19, 01.10.2015, p. 4026-4031.

Research output: Contribution to journalArticleScientificpeer-review

Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate : Phosphate antiporter. / Moradi, Mahmoud; Enkavi, Giray; Tajkhorshid, Emad.

In: Nature Communications, Vol. 6, 8393, 29.09.2015.

Research output: Contribution to journalArticleScientificpeer-review

Reducing overdiagnosis by polygenic risk-stratified screening : Findings from the Finnish section of the ERSPC. / Pashayan, Nora; Pharoah, Paul D P; Schleutker, Johanna; Talala, Kirsi; Tammela, Teuvo L J; Määttänen, Liisa; Harrington, Patricia; Tyrer, Jonathan; Eeles, Rosalind; Duffy, Stephen W.; Auvinen, Anssi.

In: British Journal of Cancer, Vol. 113, No. 7, 29.09.2015, p. 1086-1093.

Research output: Contribution to journalArticleScientificpeer-review

Intraprostatic inflammation is positively associated with serum PSA in men with PSA <4 ngml-1, normal DRE and negative for prostate cancer. / Umbehr, M. H.; Gurel, B.; Murtola, T. J.; Sutcliffe, S.; Peskoe, S. B.; Tangen, C. M.; Goodman, P. J.; Thompson, I. M.; Lippman, S. M.; Lucia, M. S.; Parnes, H. L.; Drake, C. G.; Nelson, W. G.; De Marzo, A. M.; Platz, E. A.

In: PROSTATE CANCER AND PROSTATIC DISEASES, Vol. 18, No. 3, 14.09.2015, p. 264-269.

Research output: Contribution to journalArticleScientificpeer-review

Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions. / Kokko, Marika E.; Mäkinen, Annukka E.; Sulonen, Mira L K; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 101, 05.09.2015, p. 248-252.

Research output: Contribution to journalArticleScientificpeer-review

Is Daylight-PDT a good treatment option during solar eclipse? / Vicentini, C.; Tylcz, J. B.; Betrouni, N.; Mortier, L.; Mordon, S.

In: PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vol. 12, No. 3, 01.09.2015, p. 376-377.

Research output: Contribution to journalLetterScientificpeer-review

Sotalol, but not digoxin is associated with decreased prostate cancer risk : A population-based case-control study. / Kaapu, Kalle J.; Ahti, Janne; Tammela, Teuvo L J; Auvinen, Anssi; Murtola, Teemu J.

In: International Journal of Cancer, Vol. 137, No. 5, 01.09.2015, p. 1187-1195.

Research output: Contribution to journalArticleScientificpeer-review

Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells. / Sorkio, Anni; Porter, Patrick J.; Juuti-Uusitalo, Kati; Meenan, Brian J.; Skottman, Heli; Burke, George A.

In: Tissue Engineering Part A, Vol. 21, No. 17-18, 01.09.2015, p. 2301-2314.

Research output: Contribution to journalArticleScientificpeer-review

Novel analysis software for detecting and classifying Ca2+ transient abnormalities in stem cell-derived cardiomyocytes. / Penttinen, Kirsi; Siirtola, Harri; Àvalos-Salguero, Jorge; Vainio, Tiina; Juhola, Martti; Aalto-Setälä, Katriina.

In: PLoS ONE, Vol. 10, No. 8, e0135806, 26.08.2015.

Research output: Contribution to journalArticleScientificpeer-review

Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data. / Rane, Jayant K.; Ylipää, Antti; Adamson, Rachel; Mann, Vincent M.; Simms, Matthew S.; Collins, Anne T.; Visakorpi, Tapio; Nykter, Matti; Maitland, Norman J.

In: British Journal of Cancer, Vol. 113, No. 4, 11.08.2015, p. 611-615.

Research output: Contribution to journalArticleScientificpeer-review

Human breast cancer cells educate macrophages toward the M2 activation status. / Sousa, Sofia; Brion, Régis; Lintunen, Minnamaija; Kronqvist, Pauliina; Sandholm, Jouko; Mönkkönen, Jukka; Kellokumpu-Lehtinen, Pirkko Liisa; Lauttia, Susanna; Tynninen, Olli; Joensuu, Heikki; Heymann, Dominique; Määttä, Jorma A.

In: BREAST CANCER RESEARCH, Vol. 17, No. 1, 101, 05.08.2015.

Research output: Contribution to journalArticleScientificpeer-review

His-tagged norovirus-like particles : A versatile platform for cellular delivery and surface display. / Koho, Tiia; Ihalainen, Teemu O.; Stark, Marie; Uusi-Kerttula, Hanni; Wieneke, Ralph; Rahikainen, Rolle; Blazevic, Vesna; Marjomäki, Varpu; Tampé, Robert; Kulomaa, Markku S.; Hytönen, Vesa P.

In: European Journal of Pharmaceutics and Biopharmaceutics, Vol. 96, 21.07.2015, p. 22-31.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of the cellular intake of a gene expression inducer at high concentrations. / Tran, Huy; Oliveira, Samuel M.D. Dias; Goncalves, Nadia; Ribeiro, Andre S.

In: Molecular Biosystems, Vol. 11, No. 9, 20.07.2015, p. 2579-2587.

Research output: Contribution to journalArticleScientificpeer-review

In-vivo deformation measurements of the human heart by 3D Digital Image Correlation. / Hokka, Mikko; Mirow, Nikolas; Nagel, Horst; Irqsusi, Marc; Vogt, Sebastian; Kuokkala, Veli Tapani.

In: Journal of Biomechanics, Vol. 48, No. 10, 16.07.2015, p. 2217-2220.

Research output: Contribution to journalArticleScientificpeer-review

Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells. / Ojansivu, Miina; Vanhatupa, Sari; Björkvik, Leena; Häkkänen, Heikki; Kellomäki, Minna; Autio, Reija; Ihalainen, Janne A.; Hupa, Leena; Miettinen, Susanna.

In: Acta Biomaterialia, Vol. 21, 15.07.2015, p. 190-203.

Research output: Contribution to journalArticleScientificpeer-review

Biogenesis of Nascent High Density Lipoprotein Particles. / Koivuniemi, Artturi; Vattulainen, Ilpo.

In: Structure, Vol. 23, No. 7, 3212, 09.07.2015, p. 1153-1154.

Research output: Contribution to journalArticleScientificpeer-review

Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent. / Marjakangas, Jatta M.; Lakaniemi, Aino Maija; Koskinen, Perttu E. P.; Chang, Jo Shu; Puhakka, Jaakko A.

In: Biochemical Engineering Journal, Vol. 99, 05.07.2015, p. 48-54.

Research output: Contribution to journalArticleScientificpeer-review

μCT based assessment of mechanical deformation of designed PTMC scaffolds. / Narra, Nathaniel; Blanquer, Sebastien B G; Haimi, Suvi P.; Grijpma, Dirk W.; Hyttinen, Jari.

In: Clinical Hemorheology and Microcirculation, Vol. 60, No. 1, 02.07.2015, p. 99-108.

Research output: Contribution to journalArticleScientificpeer-review

A robust AMMI model for the analysis of genotype-by-environment data. / Rodrigues, Paulo C.; Monteiro, Andreia; Lourenço, Vanda M.

In: Bioinformatics, Vol. 32, No. 1, 01.07.2015, p. 58-66.

Research output: Contribution to journalArticleScientificpeer-review

Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts. / Nybond, Susanna; Karp, Matti; Yrjönen, Teijo; Tammela, Päivi.

In: Journal of Microbiological Methods, Vol. 114, 01.07.2015, p. 54-56.

Research output: Contribution to journalArticleScientificpeer-review

Cholesterol under oxidative stress : How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. / Kulig, Waldemar; Olzyńska, Agnieszka; Jurkiewicz, Piotr; Kantola, Anu M.; Komulainen, Sanna; Manna, Moutusi; Pourmousa, Mohsen; Vazdar, Mario; Cwiklik, Lukasz; Rog, Tomasz; Khelashvili, George; Harries, Daniel; Telkki, Ville Veikko; Hof, Martin; Vattulainen, Ilpo; Jungwirth, Pavel.

In: Free Radical Biology and Medicine, Vol. 84, 01.07.2015, p. 30-41.

Research output: Contribution to journalArticleScientificpeer-review

Effects of remedies made in patient setup process on residual setup errors and margins in head and neck cancer radiotherapy based on 2D image guidance. / Kapanen, Mika; Laaksomaa, Marko; Tulijoki, Tapio; Kellokumpu-Lehtinen, Pirkko Liisa; Hyödynmaa, Simo.

In: Reports of Practical Oncology and Radiotherapy, Vol. 20, No. 4, 01.07.2015, p. 292-298.

Research output: Contribution to journalArticleScientificpeer-review

Single-cell kinetics of a repressilator when implemented in a single-copy plasmid. / Oliveira, Samuel M. D.; Chandraseelan, Jerome G.; Häkkinen, Antti; Goncalves, Nadia S. M.; Yli-Harja, Olli; Startceva, Sofia; S. Ribeiro, Andre.

In: Molecular Biosystems, Vol. 11, No. 7, 01.07.2015, p. 1939-1945.

Research output: Contribution to journalArticleScientificpeer-review

The influence of SrO and CaO in silicate and phosphate bioactive glasses on human gingival fibroblasts. / Massera, J.; Kokkari, A.; Närhi, T.; Hupa, L.

In: Journal of Materials Science: Materials in Medicine, Vol. 26, No. 6, 196, 25.06.2015.

Research output: Contribution to journalArticleScientificpeer-review

Dynamics of the peripheral membrane protein P2 from human myelin measured by neutron scattering : A Comparison between wild-type protein and a hinge mutant. / Laulumaa, Saara; Nieminen, Tuomo; Lehtimäki, Mari; Aggarwal, Shweta; Simons, Mikael; Koza, Michael M.; Vattulainen, Ilpo; Kursula, Petri; Natali, Francesca.

In: PLoS ONE, Vol. 10, No. 6, e128954, 11.06.2015.

Research output: Contribution to journalArticleScientificpeer-review

A genome-wide expression quantitative trait loci analysis of proprotein convertase subtilisin/kexin enzymes identifies a novel regulatory gene variant for FURIN expression and blood pressure. / Turpeinen, Hannu; Seppälä, Ilkka; Lyytikäinen, Leo Pekka; Raitoharju, Emma; Hutri-Kähönen, Nina; Levula, Mari; Oksala, Niku; Waldenberger, Melanie; Klopp, Norman; Illig, Thomas; Mononen, Nina; Laaksonen, Reijo; Raitakari, Olli; Kähönen, Mika; Lehtimäki, Terho; Pesu, Marko.

In: HUMAN GENETICS, Vol. 134, No. 6, 01.06.2015, p. 627-636.

Research output: Contribution to journalArticleScientificpeer-review

Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation. / Nguyen, Su Duy; Javanainen, Matti; Rissanen, Sami; Zhao, Hongxia; Huusko, Jenni; Kivelä, Annukka M.; Ylä-Herttuala, Seppo; Navab, Mohamad; Fogelman, Alan M.; Vattulainen, Ilpo; Kovanen, Petri T.; Öörni, Katariina.

In: Journal of Lipid Research, Vol. 56, No. 6, 01.06.2015, p. 1206-1221.

Research output: Contribution to journalArticleScientificpeer-review

MIR-25 modulates invasivenessand dissemination of human prostate cancer cells via regulation of αv-and α6-integrin expression. / Zoni, E.; Van Der Horst, G.; Van De Merbel, A. F.; Chen, L.; Rane, J. K.; Pelger, R. C M; Collins, A. T.; Visakorpi, T.; Snaar-Jagalska, B. E.; Maitland, N. J.; Van Der Pluijm, G.

In: Cancer Research, Vol. 75, No. 11, 01.06.2015, p. 2326-2336.

Research output: Contribution to journalArticleScientificpeer-review

Structural analysis of treatment cycles representing transitions between nursing organizational units inferred from diabetes. / Dehmer, Matthias; Kurt, Zeyneb; Emmert-Streib, Frank; Them, Christa; Schulc, Eva; Hofer, Sabine.

In: PLoS ONE, Vol. 10, No. 6, e0127152, 01.06.2015.

Research output: Contribution to journalArticleScientificpeer-review

Using shRNA experiments to validate gene regulatory networks. / Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin.

In: Genomics Data, Vol. 4, 01.06.2015, p. 123-126.

Research output: Contribution to journalArticleScientificpeer-review

Survival benefit of early androgen receptor inhibitor therapy in locally advanced prostate cancer : Long-term follow-up of the SPCG-6 study. / Thomsen, Frederik B.; Brasso, Klaus; Christensen, Ib J.; Johansson, Jan Erik; Angelsen, Anders; Tammela, Teuvo L J; Iversen, Peter.

In: EUROPEAN JOURNAL OF CANCER, Vol. 51, No. 10, 30.05.2015, p. 1283-1292.

Research output: Contribution to journalArticleScientificpeer-review

MiRNA profiles in lymphoblastoid cell lines of finnish prostate cancer families. / Fischer, Daniel; Wahlfors, Tiina; Mattila, Henna; Oja, Hannu; Tammela, Teuvo L J; Schleutker, Johanna.

In: PLoS ONE, Vol. 10, No. 5, e0127427, 28.05.2015.

Research output: Contribution to journalArticleScientificpeer-review

Fine-mapping the 2q37 and 17q11.2-q22 loci for novel genes and sequence variants associated with a genetic predisposition to prostate cancer. / Laitinen, Virpi H.; Rantapero, Tommi; Fischer, Daniel; Vuorinen, Elisa M.; Tammela, Teuvo L J; Wahlfors, Tiina; Schleutker, Johanna.

In: International Journal of Cancer, Vol. 136, No. 10, 15.05.2015, p. 2316-2327.

Research output: Contribution to journalArticleScientificpeer-review

The Finnish prostate cancer screening trial : Analyses on the screening failures. / Kilpeläinen, Tuomas P.; Tammela, Teuvo L J; Malila, Nea; Hakama, Matti; Santti, Henrikki; Määttänen, Liisa; Stenman, U. H.; Kujala, Paula; Auvinen, Anssi.

In: International Journal of Cancer, Vol. 136, No. 10, 15.05.2015, p. 2437-2443.

Research output: Contribution to journalArticleScientificpeer-review

Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data. / Matos Simoes, Ricardo de; Dalleau, Sabine; Williamson, Kate E.; Emmert-Streib, Frank.

In: BMC Systems Biology, Vol. 9, 21, 14.05.2015.

Research output: Contribution to journalArticleScientificpeer-review

Antiarrhythmic effects of dantrolene in patients with catecholaminergic polymorphic ventricular tachycardia and replication of the responses using iPSC models. / Penttinen, Kirsi; Swan, Heikki; Vanninen, Sari; Paavola, Jere; Lahtinen, Annukka M.; Kontula, Kimmo; Aalto-Setälä, Katriina.

In: PLoS ONE, Vol. 10, No. 5, e0125366, 01.05.2015.

Research output: Contribution to journalArticleScientificpeer-review

Biomimetic collagen I and IV double layer Langmuir-Schaefer films asmicroenvironment for human pluripotent stem cell derived retinal pigment epithelial cells. / Sorkio, Anni E.; Vuorimaa-Laukkanen, Elina P.; Hakola, Hanna M.; Liang, Huamin; Ujula, Tiina A.; Valle-Delgado, Juan José; Österberg, Monika; Yliperttula, Marjo L.; Skottman, Heli.

In: Biomaterials, Vol. 51, 01.05.2015, p. 257-269.

Research output: Contribution to journalArticleScientificpeer-review

Family history in the finnish prostate cancer screening trial. / Saarimäki, Lasse; Tammela, Teuvo L.; Määttänen, Liisa; Taari, Kimmo; Kujala, Paula M.; Raitanen, Jani; Auvinen, Anssi.

In: International Journal of Cancer, Vol. 136, No. 9, 01.05.2015, p. 2172-2177.

Research output: Contribution to journalArticleScientificpeer-review

Microarray analysis of differentially expressed genes in ovarian and fallopian tube epithelium from risk-reducing salpingo-oophorectomies. / Veskimäe, Kristina; Staff, Synnöve; Tabaro, Francesco; Nykter, Matti; Isola, Jorma; Mäenpää, Johanna.

In: Genes Chromosomes and Cancer, Vol. 54, No. 5, 01.05.2015, p. 276-287.

Research output: Contribution to journalArticleScientificpeer-review

Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway. / Saurus, P.; Kuusela, S.; Lehtonen, E.; Hyvönen, M. E.; Ristola, M.; Fogarty, C. L.; Tienari, J.; Lassenius, M. I.; Forsblom, C.; Lehto, M.; Saleem, M. A.; Groop, P. H.; Holthöfer, H.; Lehtonen, S.

In: CELL DEATH AND DISEASE, Vol. 6, No. 5, e1752, 01.05.2015.

Research output: Contribution to journalArticleScientificpeer-review

Sec14-nodulin proteins and the patterning of phosphoinositide landmarks for developmental control of membrane morphogenesis. / Ghosh, Ratna; De Campos, Marília K F; Huang, Jin; Huh, Seong K.; Orlowski, Adam; Yang, Yuan; Tripathi, Ashutosh; Nile, Aaron; Lee, Hsin-Chieh; Dynowski, Marek; Schäfer, Helen; Róg, Tomasz; Lete, Marta G.; Ahyayauch, Hasna; Alonso, Alicia; Vattulainen, Ilpo; Igumenova, Tatyana I.; Schaaf, Gabriel; Bankaitis, Vytas A.

In: Molecular Biology of the Cell, Vol. 26, No. 9, 01.05.2015, p. 1764-1781.

Research output: Contribution to journalArticleScientificpeer-review

Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins. / Raghupathy, Riya; Anilkumar, Anupama Ambika; Polley, Anirban; Singh, Parvinder Pal; Yadav, Mahipal; Johnson, Charles; Suryawanshi, Sharad; Saikam, Varma; Sawant, Sanghapal D.; Panda, Aniruddha; Guo, Zhongwu; Vishwakarma, Ram A.; Rao, Madan; Mayor, Satyajit.

In: Cell, Vol. 161, No. 3, 23.04.2015, p. 581-594.

Research output: Contribution to journalArticleScientificpeer-review

Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase. / Sharma, Vivek; Ala-Vannesluoma, Pauliina; Vattulainen, Ilpo; Wikström, Mårten; Róg, Tomasz.

In: Biochimica et Biophysica Acta: Bioenergetics, Vol. 1847, No. 8, 17.04.2015, p. 690-697.

Research output: Contribution to journalArticleScientificpeer-review

European code against cancer 4th edition : 12 ways to reduce your cancer risk. / Schüz, Joachim; Espina, Carolina; Villain, Patricia; Herrero, Rolando; Leon, Maria E.; Minozzi, Silvia; Romieu, Isabelle; Segnan, Nereo; Wardle, Jane; Wiseman, Martin; Belardelli, Filippo; Bettcher, Douglas; Cavalli, Franco; Galea, Gauden; Lenoir, Gilbert; Martin-Moreno, Jose M.; Nicula, Florian Alexandru; Olsen, Jørgen H.; Patnick, Julietta; Primic-Zakelj, Maja; Puska, Pekka; Van Leeuwen, Flora E.; Wiestler, Otmar; Zatonski, Witold; Guha, Neela; Kralikova, Eva; McNeill, Anne; Peruga, Armando; Anderson, Annie; Berrino, Franco; Boutron-Ruault, Marie Christine; Cecchini, Michele; Key, Tim J.; Leitzmann, Michael; Norat, Teresa; Powers, Hilary J.; Scoccianti, Chiara; Auvinen, Anssi; de Vries, Esther; Erdmann, Friederike; Greinert, Rüdiger; Harrison, John; Kesminiene, Ausrele; McColl, Neil; Friis, Søen; Kogevinas, Manolis; Saracci, Rodolfo; Straif, Kurt; Vainio, Harri; Almonte, Maribel; Anttila, Ahti; De Vuyst, Hugo; Dillner, Joakim; Franceschi, Silvia; Gonzalez, Paula; Hall, Andrew; Park, Jin Young; Armaroli, Paola; Atkin, Wendy; Dean, Peter B.; de Koning, Harry; Dillner, Lena; Kuipers, Ernst; Lansdorp-Vogelaar, Iris; Paci, Eugenio; Regula, Jaroslaw; Suonio, Eero; Törnberg, Sven; Wood, Lynn Faulds; Gaudin, Nicolas; Frie, Kirstin Grosse; Terrasse, Veronique; Winstanley, Kelly; Bellisario, Cristina; Biagioli, Elena; Cinquini, Michela; Gianola, Silvia; Lorenzo, Marien Gonzalez; von Karsa, Lawrence; Lignini, Tracy.

In: CANCER EPIDEMIOLOGY, Vol. 39, 09.04.2015, p. S1-S10.

Research output: Contribution to journalArticleScientificpeer-review

A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstruction. / Moriya, Toshio; Acar, Erman; Cheng, R. Holland; Ruotsalainen, Ulla.

In: Journal of Structural Biology, Vol. 191, No. 3, 03.04.2015, p. 318–331.

Research output: Contribution to journalArticleScientificpeer-review

Early effects of adjuvant breast cancer radiotherapy on right ventricular systolic and diastolic function. / Tuohinen, Suvi Sirkku; Skyttä, Tanja; Virtanen, Vesa; Luukkaala, Tiina; Kellokumpu-Lehtinen, Pirkko Liisa; Raatikainen, Pekka.

In: Anticancer Research, Vol. 35, No. 4, 01.04.2015, p. 2141-2147.

Research output: Contribution to journalArticleScientificpeer-review

Low-dose ionising radiation and cardiovascular diseases - Strategies for molecular epidemiological studies in Europe. / Kreuzer, Michaela; Auvinen, Anssi; Cardis, Elisabeth; Hall, Janet; Jourdain, Jean Rene; Laurier, Dominique; Little, Mark P.; Peters, Annette; Raj, Ken; Russell, Nicola S.; Tapio, Soile; Zhang, Wei; Gomolka, Maria.

In: MUTATION RESEARCH: REVIEWS IN MUTATION RESEARCH, Vol. 764, 01.04.2015, p. 90-100.

Research output: Contribution to journalReview ArticleScientificpeer-review

O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs. / Liu, Jining; Jin, Chunsheng; Cherian, Reeja Maria; Karlsson, Niclas G.; Holgersson, Jan.

In: Journal of Biotechnology, Vol. 199, 01.04.2015, p. 77-89.

Research output: Contribution to journalArticleScientificpeer-review

Ageing-associated changes in the human DNA methylome : Genomic locations and effects on gene expression. / Marttila, Saara; Kananen, Laura; Häyrynen, Sergei; Jylhävä, Juulia; Nevalainen, Tapio; Hervonen, Antti; Jylhä, Marja; Nykter, Matti; Hurme, Mikko.

In: BMC Genomics, Vol. 16, No. 1, 179, 14.03.2015.

Research output: Contribution to journalArticleScientificpeer-review

Multi-stable dynamics of the non-adiabatic repressilator. / Potapov, Ilya; Zhurov, Boris; Volkov, Evgeny.

In: Journal of the Royal Society. Interface, Vol. 12, No. 104, 20141315, 06.03.2015.

Research output: Contribution to journalArticleScientificpeer-review

Light emitting fabric technologies for photodynamic therapy. / Mordon, Serge; Cochrane, Cédric; Tylcz, Jean Baptiste; Betrouni, Nacim; Mortier, Laurent; Koncar, Vladan.

In: PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vol. 12, No. 1, 01.03.2015, p. 1-8.

Research output: Contribution to journalArticleScientificpeer-review

The concurrent use of aromatase inhibitors and radiotherapy induces echocardiographic changes in patients with breast cancer. / Skyttä, Tanja; Tuohinen, Suvi; Virtanen, Vesa; Raatikainen, Pekka; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Anticancer Research, Vol. 35, No. 3, 01.03.2015, p. 1559-1566.

Research output: Contribution to journalArticleScientificpeer-review

Thermal transport characteristics of human skin measured in vivo using ultrathin conformal arrays of thermal sensors and actuators. / Webb, R. Chad; Pielak, Rafal M.; Bastien, Philippe; Ayers, Joshua; Niittynen, Juha; Kurniawan, Jonas; Manco, Megan; Lin, Athena; Cho, Nam Heon; Malyrchuk, Viktor; Balooch, Guive; Rogers, John A.

In: PLoS ONE, Vol. 10, No. 2, e0118131, 06.02.2015.

Research output: Contribution to journalArticleScientificpeer-review

Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds. / Nybond, Susanna; Ghemtio, Leo; Nawrot, Dorota A.; Karp, Matti; Xhaard, Henri; Tammela, Päivi.

In: Assay and Drug Development Technologies, Vol. 13, No. 1, 01.02.2015, p. 25-33.

Research output: Contribution to journalArticleScientificpeer-review

VEGFR3 and CD31 as prognostic factors in renal cell cancer. / Virman, Juha Pekka; Bono, Petri; Luukkaala, Tiina; Sunela, Kaisa; Kujala, Paula; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Anticancer Research, Vol. 35, No. 2, 01.02.2015, p. 921-927.

Research output: Contribution to journalArticleScientificpeer-review

UniProt : A hub for protein information. / Bateman, Alex; Martin, Maria Jesus; O'Donovan, Claire; Magrane, Michele; Apweiler, Rolf; Alpi, Emanuele; Antunes, Ricardo; Arganiska, Joanna; Bely, Benoit; Bingley, Mark; Bonilla, Carlos; Britto, Ramona; Bursteinas, Borisas; Chavali, Gayatri; Cibrian-Uhalte, Elena; Da Silva, Alan; De Giorgi, Maurizio; Dogan, Tunca; Fazzini, Francesco; Gane, Paul; Castro, Leyla Garcia; Garmiri, Penelope; Hatton-Ellis, Emma; Hieta, Reija; Huntley, Rachael; Legge, Duncan; Liu, Wudong; Luo, Jie; Macdougall, Alistair; Mutowo, Prudence; Nightingale, Andrew; Orchard, Sandra; Pichler, Klemens; Poggioli, Diego; Pundir, Sangya; Pureza, Luis; Qi, Guoying; Rosanoff, Steven; Saidi, Rabie; Sawford, Tony; Shypitsyna, Aleksandra; Turner, Edward; Volynkin, Vladimir; Wardell, Tony; Watkins, Xavier; Zellner, Hermann; Cowley, Andrew; Figueira, Luis; Li, Weizhong; McWilliam, Hamish; Lopez, Rodrigo; Xenarios, Ioannis; Bougueleret, Lydie; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Aimo, Lucila; Argoud-Puy, Ghislaine; Auchincloss, Andrea; Axelsen, Kristian; Bansal, Parit; Baratin, Delphine; Blatter, Marie Claude; Boeckmann, Brigitte; Bolleman, Jerven; Boutet, Emmanuel; Breuza, Lionel; Casal-Casas, Cristina; De Castro, Edouard; Coudert, Elisabeth; Cuche, Beatrice; Doche, Mikael; Dornevil, Dolnide; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gasteiger, Elisabeth; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; Jungo, Florence; Keller, Guillaume; Lara, Vicente; Lemercier, Philippe; Lieberherr, Damien; Lombardot, Thierry; Martin, Xavier; Masson, Patrick; Morgat, Anne; Neto, Teresa; Nouspikel, Nevila; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pozzato, Monica; Pruess, Manuela; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne Lise; Wu, Cathy H.; Arighi, Cecilia N.; Arminski, Leslie; Chen, Chuming; Chen, Yongxing; Garavelli, John S.; Huang, Hongzhan; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Suzek, Baris E.; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Yeh, Lai Su; Yerramalla, Meher Shruti; Zhang, Jian.

In: Nucleic Acids Research, Vol. 43, No. D1, 28.01.2015, p. D204-D212.

Research output: Contribution to journalArticleScientificpeer-review

Computational cancer biology : education is a natural key to many locks. / Emmert-Streib, Frank; Zhang, Shu Dong; Hamilton, Peter.

In: BMC Cancer, Vol. 15, No. 1, 7, 15.01.2015.

Research output: Contribution to journalArticleScientificpeer-review

Oxidation half-reaction of aqueous nucleosides and nucleotides via photoelectron spectroscopy augmented by ab initio calculations. / Schroeder, Christi A.; Pluharová, Eva; Seidel, Robert; Schroeder, William P.; Faubel, Manfred; Slavíçek, Petr; Winter, Bernd; Jungwirth, Pavel; Bradforth, Stephen E.

In: Journal of the American Chemical Society, Vol. 137, No. 1, 14.01.2015, p. 201-209.

Research output: Contribution to journalArticleScientificpeer-review

A motion artifact generation and assessment system for the rapid testing of surface biopotential electrodes. / Cömert, Alper; Hyttinen, Jari.

In: Physiological Measurement, Vol. 36, No. 1, 1, 01.01.2015, p. 1-25.

Research output: Contribution to journalArticleScientificpeer-review

Cost-effectiveness of prostate cancer screening : A simulation study based on ERSPC data. / Heijnsdijk, E. A M; De Carvalho, T. M D; Auvinen, A.; Zappa, M.; Nelen, V.; Kwiatkowski, M.; Villers, A.; Páez, A.; Moss, S. M.; Tammela, T. L J; Recker, F.; Denis, L.; Carlsson, S. V.; Wever, E. M.; Bangma, C. H.; Schröder, F. H.; Roobol, M. J.; Hugosson, J.; De Koning, H. J.

In: JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vol. 107, No. 1, dju366, 01.01.2015.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. / Häkkinen, Antti; Ribeiro, Andre S.

In: Bioinformatics, Vol. 31, No. 1, 01.01.2015, p. 69-75.

Research output: Contribution to journalArticleScientificpeer-review

Adaptive autoregressive model for reduction of noise in SPECT. / Takalo, Reijo; Hytti, Heli; Ihalainen, Heimo; Sohlberg, Antti.

In: Computational and Mathematical Methods in Medicine, Vol. 2015, 494691, 2015.

Research output: Contribution to journalArticleScientificpeer-review

Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning. / Lehtonen, Soili I.; Taskinen, Barbara; Ojala, Elina; Kukkurainen, Sampo; Rahikainen, Rolle; Riihimäki, Tiina A.; Laitinen, Olli H.; Kulomaa, Markku S.; Hytönen, Vesa P.

In: Protein Engineering Design and Selection, Vol. 28, No. 1, 2015, p. 23-28.

Research output: Contribution to journalArticleScientificpeer-review

Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate. / Kulig, Waldemar; Jurkiewicz, Piotr; Olzyńska, Agnieszka; Tynkkynen, Joona; Javanainen, Matti; Manna, Moutusi; Rog, Tomasz; Hof, Martin; Vattulainen, Ilpo; Jungwirth, Pavel.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1848, No. 2, 2015, p. 422-432.

Research output: Contribution to journalArticleScientificpeer-review

I microRNA nella placca aterosclerotica. / Raitoharju, Emma; Oksala, Niku; Lehtimäki, Terho.

In: Biochimica Clinica, Vol. 39, No. 1, 2015, p. 56-67.

Research output: Contribution to journalArticleScientificpeer-review

Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives. / Akimova, A. V.; Rychkov, G. N.; Grin, M. A.; Filippova, N. A.; Golovina, G. V.; Durandin, N. A.; Vinogradov, A. M.; Kokrashvili, T. A.; Mironov, A. F.; Shtil, A. A.; Kuzmin, V. A.

In: ACTA NATURAE, Vol. 7, No. 1, 2015, p. 109-116.

Research output: Contribution to journalArticleScientificpeer-review

Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux. / Tienaho, Jenni; Sarjala, Tytti; Franzén, Robert; Karp, Matti.

In: Journal of Microbiological Methods, Vol. 118, 4723, 2015, p. 78-80.

Research output: Contribution to journalArticleScientificpeer-review

Multifunctional ultrasmall nanoplatforms for vascular-targeted interstitial photodynamic therapy of brain tumors guided by real-time MRI. / Bechet, Denise; Auger, Florent; Couleaud, Pierre; Marty, Eric; Ravasi, Laura; Durieux, Nicolas; Bonnet, Corinne; Plénat, François; Frochot, Céline; Mordon, Serge; Tillement, Olivier; Vanderesse, Régis; Lux, François; Perriat, Pascal; Guillemin, François; Barberi-Heyob, Muriel.

In: NANOMEDICINE: NANOTECHNOLOGY BIOLOGY AND MEDICINE, Vol. 11, No. 3, 2015, p. 657-670.

Research output: Contribution to journalArticleScientificpeer-review

Switchavidin : Reversible biotin-avidin-biotin bridges with high affinity and specificity. / Taskinen, Barbara; Zauner, Dominik; Lehtonen, Soili I.; Koskinen, Masi; Thomson, Chloe; Kähkönen, Niklas; Kukkurainen, Sampo; Määttä, Juha A E; Ihalainen, Teemu O.; Kulomaa, Markku S.; Gruber, Hermann J.; Hytönen, Vesa P.

In: Bioconjugate Chemistry, Vol. 25, No. 12, 17.12.2014, p. 2233-2243.

Research output: Contribution to journalArticleScientificpeer-review

Comparative evaluation of gene set analysis approaches for RNA-Seq data. / Rahmatallah, Yasir; Emmert-Streib, Frank; Glazko, Galina.

In: BMC Bioinformatics, Vol. 15, No. 1, 397, 05.12.2014.

Research output: Contribution to journalArticleScientificpeer-review

Rationally engineered synthetic coculture for improved biomass and product formation. / Santala, Suvi; Karp, Matti; Santala, Ville.

In: PLoS ONE, Vol. 9, No. 12, e113786, 03.12.2014.

Research output: Contribution to journalArticleScientificpeer-review

FRα : une cible pour la thérapie photodynamique prophylactique des métastases péritonéales ovariennes? / Azaïs, Henri; Moussaron, Albert; Bach, Soraya Khodja; Bassil, Alfred; Betrouni, Nacim; Frochot, Céline; Collinet, Pierre; Mordon, Serge.

In: BULLETIN DU CANCER, Vol. 101, No. 12, 01.12.2014, p. 1109-1113.

Research output: Contribution to journalReview ArticleScientificpeer-review

Interface matters : The stiffness route to stability of a thermophilic tetrameric malate dehydrogenase. / Kalimeri, Maria; Girard, Eric; Madern, Dominique; Sterpone, Fabio.

In: PLoS ONE, Vol. 9, No. 12, e113895, 01.12.2014.

Research output: Contribution to journalArticleScientificpeer-review

The talin-integrin interface under mechanical stress. / Kukkurainen, Sampo; Määttä, Juha A.; Saeger, John; Valjakka, Jarkko; Vogel, Viola; Hytönen, Vesa P.

In: Molecular Biosystems, Vol. 10, No. 12, 01.12.2014, p. 3217-3228.

Research output: Contribution to journalArticleScientificpeer-review

Toward computational cumulative biology by combining models of biological datasets. / Faisal, Ali; Peltonen, Jaakko; Georgii, Elisabeth; Rung, Johan; Kaski, Samuel.

In: PLoS ONE, Vol. 9, No. 11, e113053, 26.11.2014.

Research output: Contribution to journalArticleScientificpeer-review

Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome. / Takala, Heikki; Lehtivuori, Heli; Hammarén, Henrik; Hytönen, Vesa P.; Ihalainen, Janne A.

In: Biochemistry, Vol. 53, No. 45, 18.11.2014, p. 7076-7085.

Research output: Contribution to journalArticleScientificpeer-review

A framework for estimating radiation-related cancer risks in Japan from the 2011 Fukushima nuclear accident. / Walsh, L.; Zhang, W.; Shore, R. E.; Auvinen, A.; Laurier, D.; Wakeford, R.; Jacob, P.; Gent, N.; Anspaugh, L. R.; Schüz, J.; Kesminiene, A.; Van Deventer, E.; Tritscher, A.; Del Rosarion Pérez, M.

In: RADIATION RESEARCH, Vol. 182, No. 5, 01.11.2014, p. 556-572.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of optimal matching position for orthogonal kV setup images and minimal setup margins in radiotherapy of whole breast and lymph node areas. / Laaksomaa, Marko; Kapanen, Mika; Skyttä, Tanja; Peltola, Seppo; Hyödynmaa, Simo; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Reports of Practical Oncology and Radiotherapy, Vol. 19, No. 6, 01.11.2014, p. 369-375.

Research output: Contribution to journalArticleScientificpeer-review

Statin use and breast cancer survival : A nationwide cohort study from Finland. / Murtola, Teemu J.; Visvanathan, Kala; Artama, Miia; Vainio, Harri; Pukkala, Eero.

In: PLoS ONE, Vol. 9, No. 10, e110231, 20.10.2014.

Research output: Contribution to journalArticleScientificpeer-review

Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays. / Deng, Yang; Alicea-Velázquez, Nilda L.; Bannwarth, Ludovic; Lehtonen, Soili I.; Boggon, Titus J.; Cheng, Heung Chin; Hytönen, Vesa P.; Turk, Benjamin E.

In: Journal of Proteome Research, Vol. 13, No. 10, 03.10.2014, p. 4339-4346.

Research output: Contribution to journalArticleScientificpeer-review

Different culture conditions modulate the immunological properties of adipose stem cells. / Patrikoski, Mimmi; Sivula, Jyrki; Huhtala, Heini; Helminen, Mika; Salo, Fanny; Mannerström, Bettina; Miettinen, Susanna.

In: Stem Cells Translational Medicine, Vol. 3, No. 10, 02.10.2014, p. 1220-1230.

Research output: Contribution to journalArticleScientificpeer-review

Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography. / Rasappa, Sozaraj; Schulte, Lars; Borah, Dipu; Morris, Michael A.; Ndoni, Sokol.

In: Colloids and Interface Science Communications, Vol. 2, 01.10.2014, p. 1-5.

Research output: Contribution to journalArticleScientificpeer-review

A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. / Al Olama, Ali Amin; Kote-Jarai, Zsofia; Berndt, Sonja I.; Conti, David V.; Schumacher, Fredrick; Han, Ying; Benlloch, Sara; Hazelett, Dennis J.; Wang, Zhaoming; Saunders, Ed; Leongamornlert, Daniel; Lindstrom, Sara; Jugurnauth-Little, Sara; Dadaev, Tokhir; Tymrakiewicz, Malgorzata; Stram, Daniel O.; Rand, Kristin; Wan, Peggy; Stram, Alex; Sheng, Xin; Pooler, Loreall C.; Park, Karen; Xia, Lucy; Tyrer, Jonathan; Kolonel, Laurence N.; Le Marchand, Loic; Hoover, Robert N.; Machiela, Mitchell J.; Yeager, Merideth; Burdette, Laurie; Chung, Charles C.; Hutchinson, Amy; Yu, Kai; Goh, Chee; Ahmed, Mahbubl; Govindasami, Koveela; Guy, Michelle; Tammela, Teuvo L J; Auvinen, Anssi; Wahlfors, Tiina; Schleutker, Johanna; Visakorpi, Tapio; Leinonen, Katri A.; Xu, Jianfeng; Aly, Markus; Donovan, Jenny; Travis, Ruth C.; Key, Tim J.; Siddiq, Afshan; Canzian, Federico; Khaw, Kay Tee; Takahashi, Atsushi; Kubo, Michiaki; Pharoah, Paul; Pashayan, Nora; Weischer, Maren; Nordestgaard, Borge G.; Nielsen, Sune F.; Klarskov, Peter; Røder, Martin Andreas; Iversen, Peter; Thibodeau, Stephen N.; McDonnell, Shannon K.; Schaid, Daniel J.; Stanford, Janet L.; Kolb, Suzanne; Holt, Sarah; Knudsen, Beatrice; Coll, Antonio Hurtado; Gapstur, Susan M.; Diver, W. Ryan; Stevens, Victoria L.; Maier, Christiane; Luedeke, Manuel; Herkommer, Kathleen; Rinckleb, Antje E.; Strom, Sara S.; Pettaway, Curtis; Yeboah, Edward D.; Tettey, Yao; Biritwum, Richard B.; Adjei, Andrew A.; Tay, Evelyn; Truelove, Ann; Niwa, Shelley; Chokkalingam, Anand P.; Cannon-Albright, Lisa; Cybulski, Cezary; Wokołorczyk, Dominika; Kluzniak, Wojciech; Park, Jong; Sellers, Thomas; Lin, Hui Yi; Isaacs, William B.; Partin, Alan W.; Brenner, Hermann; Dieffenbach, Aida Karina; Stegmaier, Christa; Chen, Constance; Giovannucci, Edward L.; Ma, Jing; Stampfer, Meir; Penney, Kathryn L.; Mucci, Lorelei; John, Esther M.; Ingles, Sue A.; Kittles, Rick A.; Murphy, Adam B.; Pandha, Hardev; Michael, Agnieszka; Kierzek, Andrzej M.; Blot, William; Signorello, Lisa B.; Zheng, Wei; Albanes, Demetrius; Virtamo, Jarmo; Weinstein, Stephanie; Nemesure, Barbara; Carpten, John; Leske, Cristina; Wu, Suh Yuh; Hennis, Anselm; Kibel, Adam S.; Rybicki, Benjamin A.; Neslund-Dudas, Christine; Hsing, Ann W.; Chu, Lisa; Goodman, Phyllis J.; Klein, Eric A.; Lilly Zheng, S.; Batra, Jyotsna; Clements, Judith; Spurdle, Amanda; Teixeira, Manuel R.; Paulo, Paula; Maia, Sofia; Slavov, Chavdar; Kaneva, Radka; Mitev, Vanio; Witte, John S.; Casey, Graham; Gillanders, Elizabeth M.; Seminara, Daniella; Riboli, Elio; Hamdy, Freddie C.; Coetzee, Gerhard A.; Li, Qiyuan; Freedman, Matthew L.; Hunter, David J.; Muir, Kenneth; Gronberg, Henrik; Neal, David E.; Southey, Melissa; Giles, Graham G.; Severi, Gianluca; Cook, Michael B.; Nakagawa, Hidewaki; Wiklund, Fredrik; Kraft, Peter; Chanock, Stephen J.; Henderson, Brian E.; Easton, Douglas F.; Eeles, Rosalind A.; Haiman, Christopher A.

In: Nature Genetics, Vol. 46, No. 10, 26.09.2014, p. 1103-1109.

Research output: Contribution to journalArticleScientificpeer-review

Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production. / Praveenkumar, Ramasamy; Kim, Bohwa; Choi, Eunji; Lee, Kyubock; Cho, Sunja; Hyun, Ju Soo; Park, Ji Yeon; Lee, Young Chul; Lee, Hyun Uk; Lee, Jin Suk; Oh, You Kwan.

In: Bioprocess and Biosystems Engineering, Vol. 37, No. 10, 12.09.2014, p. 2083-2094.

Research output: Contribution to journalArticleScientificpeer-review

Pharmacokinetics of an injectable modified-release 2-hydroxyflutamide formulation in the human prostate gland using a semiphysiologically based biopharmaceutical model. / Sjögren, Erik; Tammela, Teuvo L.; Lennernäs, Bo; Taari, Kimmo; Isotalo, Taina; Malmsten, Lars Åke; Axén, Niklas; Lennernäs, Hans.

In: Molecular Pharmaceutics, Vol. 11, No. 9, 02.09.2014, p. 3097-3111.

Research output: Contribution to journalArticleScientificpeer-review

Advanced Material-Based Sensing Structures. / Tentzeris, Manos M.; Kim, Sangkil; Lakafosis, Vasileios; Lee, Hoseon; Le, Taoran; Vyas, Rushi; Mukala, Sagar; Traille, Anya.

Handbook of Biomedical Telemetry. Wiley-Blackwell, 2014. p. 633-689.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Power Issues in Biomedical Telemetry. / Tentzeris, Manos M.; Vyas, Rushi; Wei, Wei; Kawahara, Yoshihiro; Yang, Li; Georgakopoulos, Stavros; Lakafosis, Vasileios; Kim, Sangkil; Lee, Hoseon; Le, Taoran; Mukala, Sagar; Traille, Anya.

Handbook of Biomedical Telemetry. Wiley-Blackwell, 2014. p. 108-130.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Cruciate ligament reconstruction and risk of knee osteoarthritis : The association between cruciate ligament injury and post-traumatic osteoarthritis. a population based nationwide study in Sweden, 1987-2009. / Nordenvall, Richard; Bahmanyar, Shahram; Adami, Johanna; Mattila, Ville M.; Felländer-Tsai, Li.

In: PLoS ONE, Vol. 9, No. 8, e104681, 22.08.2014.

Research output: Contribution to journalArticleScientificpeer-review

Effect of Omeprazole Dose, Nonsteroidal Anti-inflammatory Agents, and Smoking on Repair Mechanisms in Acute Peptic Ulcer Bleeding. / Rantanen, Tuomo; Udd, Marianne; Honkanen, Teemu; Miettinen, Pekka; Kärjä, Vesa; Rantanen, Lassi; Julkunen, Risto; Mustonen, Harri; Paavonen, Timo; Oksala, Niku.

In: Digestive Diseases and Sciences, Vol. 59, No. 11, 20.08.2014, p. 2666-2674.

Research output: Contribution to journalArticleScientificpeer-review

Mapping of the chromosomal amplification 1p21-22 in bladder cancer. / Scaravilli, Mauro; Asero, Paola; Tammela, Teuvo Lj; Visakorpi, Tapio; Saramäki, Outi R.

In: BMC RESEARCH NOTES, Vol. 7, No. 1, 547, 18.08.2014.

Research output: Contribution to journalArticleScientificpeer-review

Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. / Spencer, C. Ian; Baba, Shiro; Nakamura, Kenta; Hua, Ethan A.; Sears, Marie A F; Fu, Chi Cheng; Zhang, Jianhua; Balijepalli, Sadguna; Tomoda, Kiichiro; Hayashi, Yohei; Lizarraga, Paweena; Wojciak, Julianne; Scheinman, Melvin M.; Aalto-Setälä, Katriina; Makielski, Jonathan C.; January, Craig T.; Healy, Kevin E.; Kamp, Timothy J.; Yamanaka, Shinya; Conklin, Bruce R.

In: Stem Cell Reports, Vol. 3, No. 2, 12.08.2014, p. 269-281.

Research output: Contribution to journalArticleScientificpeer-review

Claudins as prognostic factors for renal cell cancer. / Virman, Juha Pekka; Soini, Ylermi; Kujala, Paula; Luukkaala, Tiina; Salminen, Tapio; Sunela, Kaisa; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Anticancer Research, Vol. 34, No. 8, 01.08.2014, p. 4181-4188.

Research output: Contribution to journalArticleScientificpeer-review

Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces. / Kurppa, Katri; Hytönen, Vesa P.; Nakari-Setälä, Tiina; Kulomaa, Markku S.; Linder, Markus B.

In: Colloids and Surfaces B: Biointerfaces, Vol. 120, 01.08.2014, p. 102-109.

Research output: Contribution to journalArticleScientificpeer-review

ERBB4 promoter polymorphism is associated with poor distant disease-free survival in high-risk early breast cancer. / Kurppa, Kari J.; Rokavec, Matjaz; Sundvall, Maria; Kellokumpu-Lehtinen, Pirkko Liisa; Joensuu, Heikki; Brauch, Hiltrud; Elenius, Klaus.

In: PLoS ONE, Vol. 9, No. 7, e102388, 18.07.2014.

Research output: Contribution to journalArticleScientificpeer-review

Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study. / Raitoharju, Emma; Seppälä, Ilkka; Oksala, Niku; Lyytikäinen, Leo Pekka; Raitakari, Olli; Viikari, Jorma; Ala-Korpela, Mika; Soininen, Pasi; Kangas, Antti J.; Waldenberger, Melanie; Klopp, Norman; Illig, Thomas; Leiviskä, Jaana; Loo, Britt Marie; Hutri-Kähönen, Nina; Kähönen, Mika; Laaksonen, Reijo; Lehtimäki, Terho.

In: Molecular and Cellular Endocrinology, Vol. 391, No. 1-2, 25.06.2014, p. 41-49.

Research output: Contribution to journalArticleScientificpeer-review

Chimeric avidin - NMR structure and dynamics of a 56 kDa homotetrameric thermostable protein. / Tossavainen, Helena; Kukkurainen, Sampo; Määttä, Juha A E; Kähkönen, Niklas; Pihlajamaa, Tero; Hytönen, Vesa P.; Kulomaa, Markku S.; Permi, Perttu.

In: PLoS ONE, Vol. 9, No. 6, e100564, 24.06.2014.

Research output: Contribution to journalArticleScientificpeer-review

Hydration of the chloride ion in concentrated aqueous solutions using neutron scattering and molecular dynamics. / Pluhařová, Eva; Fischer, Henry E.; Mason, Philip E.; Jungwirth, Pavel.

In: Molecular Physics, Vol. 112, No. 9-10, 19.05.2014, p. 1230-1240.

Research output: Contribution to journalArticleScientificpeer-review

Light-fuelled transport of large dendrimers and proteins. / Koskela, Jenni E.; Liljeström, Ville; Lim, Jongdoo; Simanek, Eric E.; Ras, Robin H A; Priimagi, Arri; Kostiainen, Mauri A.

In: Journal of the American Chemical Society, Vol. 136, No. 19, 14.05.2014, p. 6850-6853.

Research output: Contribution to journalArticleScientificpeer-review

RE : Prostate-specific antigen screening trials and prostate cancer deaths: The androgen deprivation connection. / Carlsson, Sigrid; Roobol, Monique J.; Schröder, Fritz H.; Hugosson, Jonas; Auvinen, Anssi.

In: JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vol. 106, No. 5, dju079, 14.05.2014.

Research output: Contribution to journalLetterScientificpeer-review

AROS has a context-dependent effect on SIRT1. / Kokkola, Tarja; Suuronen, Tiina; Molnár, Ferdinand; Määttä, Juha; Salminen, Antero; Jarho, Elina M.; Lahtela-Kakkonen, Maija.

In: FEBS Letters, Vol. 588, No. 9, 02.05.2014, p. 1523-1528.

Research output: Contribution to journalArticleScientificpeer-review

Chernobyl fallout and cancer incidence in Finland 1988-2007. / Auvinen, Anssi; Seppä, Karri; Pasanen, Kari; Kurttio, Päivi; Patama, Toni; Pukkala, Eero; Heinävaara, Sirpa; Arvela, Hannu; Verkasalo, Pia; Hakulinen, Timo.

In: International Journal of Cancer, Vol. 134, No. 9, 01.05.2014, p. 2253-2263.

Research output: Contribution to journalArticleScientificpeer-review

Impact of epoetin-beta on anemia and health-related quality of life in cancer patients : A prospective observational study using the generic 15D instrument. / Mäenpa, Johannna; Puistola, Ulla; Riska, Henrik; Sintonen, Harri; Saarni, Outi; Juvonen, Eeva; Kellokumpu-Lehtinen, Pirkko Liisa.

In: Anticancer Research, Vol. 34, No. 5, 01.05.2014, p. 2325-2330.

Research output: Contribution to journalArticleScientificpeer-review

Interrelations of graph distance measures based on topological indices. / Dehmer, Matthias; Emmert-Streib, Frank; Shi, Yongtang.

In: PLoS ONE, Vol. 9, No. 4, e94985, 23.04.2014.

Research output: Contribution to journalArticleScientificpeer-review

Hypermethylation of the GABRẼmiR-452̃miR-224 promoter in prostate cancer predicts biochemical recurrence after radical prostatectomy. / Kristensen, Helle; Haldrup, Christa; Strand, Siri; Mundbjerg, Kamilla; Mortensen, Martin M.; Thorsen, Kasper; Ostenfeld, Marie Stampe; Wild, Peter J.; Arsov, Christian; Goering, Wolfgang; Visakorpi, Tapio; Egevad, Lars; Lindberg, Johan; Grönberg, Henrik; Høyer, Søren; Borre, Michael; Orntoft, Torben F.; Sørensen, Karina D.

In: Clinical Cancer Research, Vol. 20, No. 8, 15.04.2014, p. 2169-2181.

Research output: Contribution to journalArticleScientificpeer-review

NetBioV : An R package for visualizing large network data in biology and medicine. / Tripathi, Shailesh; Dehmer, Matthias; Emmert-Streib, Frank.

In: Bioinformatics, Vol. 30, No. 19, 02.04.2014, p. 2834-2836.

Research output: Contribution to journalArticleScientificpeer-review

Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure. / Ciranna, Alessandro; Pawar, Sudhanshu S.; Santala, Ville; Karp, Matti; van Niel, Ed W J.

In: Microbial Cell Factories, Vol. 13, No. 1, 48, 28.03.2014.

Research output: Contribution to journalArticleScientificpeer-review

Rewiring the wax ester production pathway of acinetobacter baylyi ADP1. / Santala, Suvi; Efimova, Elena; Koskinen, Perttu; Karp, Matti Tapani; Santala, Ville.

In: ACS Synthetic Biology, Vol. 3, No. 3, 21.03.2014, p. 145-151.

Research output: Contribution to journalArticleScientificpeer-review

A novel chimeric avidin with increased thermal stability using DNA shuffling. / Taskinen, Barbara; Airenne, Tomi T.; Jänis, Janne; Rahikainen, Rolle; Johnson, Mark S.; Kulomaa, Markku S.; Hytönen, Vesa P.

In: PLoS ONE, Vol. 9, No. 3, e92058, 14.03.2014.

Research output: Contribution to journalArticleScientificpeer-review

KPNA7, a nuclear transport receptor, promotes malignant properties of pancreatic cancer cells in vitro. / Laurila, Eeva; Vuorinen, Elisa; Savinainen, Kimmo; Rauhala, Hanna; Kallioniemi, Anne.

In: Experimental Cell Research, Vol. 322, No. 1, 10.03.2014, p. 159-167.

Research output: Contribution to journalArticleScientificpeer-review

Network-based methods for computational diagnostics by means of R. / Mueller, Laurin A J; Dehmer, Matthias; Emmert-Streib, Frank.

Computational Medicine: Tools and Challenges. Springer-Verlag Wien, 2014. p. 185-197.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Quality of life of recently treated patients with breast cancer. / Penttinen, Heidi; Rautalin, Mervi; Roine, Risto; Jahkola, Tiina; Kellokumpu-Lehtinen, Pirkko Liisa; Huovinen, Riikka; Kautiainen, Hannu; Järvenpää, Salme; Hakamies-Blomqvist, Liisa; Blomqvist, Carl; Saarto, Tiina.

In: Anticancer Research, Vol. 34, No. 3, 01.03.2014, p. 1201-1206.

Research output: Contribution to journalArticleScientificpeer-review

Association analysis of 9,560 prostate cancer cases from the International Consortium of Prostate Cancer Genetics confirms the role of reported prostate cancer associated SNPs for familial disease. / Teerlink, Craig C.; Thibodeau, Stephen N.; McDonnell, Shannon K.; Schaid, Daniel J.; Rinckleb, Antje; Maier, Christiane; Vogel, Walther; Cancel-Tassin, Geraldine; Egrot, Christophe; Cussenot, Olivier; Foulkes, William D.; Giles, Graham G.; Hopper, John L.; Severi, Gianluca; Eeles, Ros; Easton, Douglas; Kote-Jarai, Zsofia; Guy, Michelle; Cooney, Kathleen A.; Ray, Anna M.; Zuhlke, Kimberly A.; Lange, Ethan M.; Fitzgerald, Liesel M.; Stanford, Janet L.; Ostrander, Elaine A.; Wiley, Kathleen E.; Isaacs, Sarah D.; Walsh, Patrick C.; Isaacs, William B.; Wahlfors, Tiina; Tammela, Teuvo; Schleutker, Johanna; Wiklund, Fredrik; Grönberg, Henrik; Emanuelsson, Monica; Carpten, John; Bailey-Wilson, Joan; Whittemore, Alice S.; Oakley-Girvan, Ingrid; Hsieh, Chih Lin; Catalona, William J.; Zheng, S. Lilly; Jin, Guangfu; Lu, Lingyi; Xu, Jianfeng; Camp, Nicola J.; Cannon-Albright, Lisa A.

In: HUMAN GENETICS, Vol. 133, No. 3, 03.2014, p. 347-356.

Research output: Contribution to journalArticleScientificpeer-review

Assessing interactions of two loci (rs4242382 and rs10486567) in familial prostate cancer : Statistical evaluation of epistasis. / Chen, Li Sheng; Fann, Jean Ching Yuan; Chiu, Sherry Yueh Hsia; Yen, Amy Ming Fang; Wahlfors, Tiina; Tammela, Teuvo L.; Chen, Hsiu Hsi; Auvinen, Anssi; Schleutker, Johanna.

In: PLoS ONE, Vol. 9, No. 2, e89508, 25.02.2014.

Research output: Contribution to journalArticleScientificpeer-review

Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells. / Mikhailova, Alexandra; Ilmarinen, Tanja; Uusitalo, Hannu; Skottman, Heli.

In: Stem Cell Reports, Vol. 2, No. 2, 11.02.2014, p. 219-231.

Research output: Contribution to journalArticleScientificpeer-review

Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors. / Planello, Aline C.; Ji, Junfeng; Sharma, Vivek; Singhania, Rajat; Mbabaali, Faridah; Müller, Fabian; Alfaro, Javier A.; Bock, Christoph; De Carvalho, Daniel D.; Batada, Nizar N.

In: Cell Regeneration, Vol. 3, No. 1, 4, 07.02.2014.

Research output: Contribution to journalArticleScientificpeer-review

MicroRNAs in atherosclerosis. / Hosin, Ali A.; Prasad, Anoop; Viiri, Leena E.; Davies, Alun H.; Shalhoub, Joseph.

In: Journal of Vascular Research, Vol. 51, No. 5, 06.02.2014, p. 338-349.

Research output: Contribution to journalReview ArticleScientificpeer-review

Gene Sets Net Correlations Analysis (GSNCA) : A multivariate differential coexpression test for gene sets. / Rahmatallah, Yasir; Emmert-Streib, Frank; Glazko, Galina.

In: Bioinformatics, Vol. 30, No. 3, 01.02.2014, p. 360-368.

Research output: Contribution to journalArticleScientificpeer-review

Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating. / Sorkio, Anni; Hongisto, Heidi; Kaarniranta, Kai; Uusitalo, Hannu; Juuti-Uusitalo, Kati; Skottman, Heli.

In: Tissue Engineering Part A, Vol. 20, No. 3-4, 01.02.2014, p. 622-634.

Research output: Contribution to journalArticleScientificpeer-review

A 3D Alzheimer's disease culture model and the induction of P21-activated kinase mediated sensing in iPSC derived neurons. / Zhang, Dawei; Pekkanen-Mattila, Mari; Shahsavani, Mansoureh; Falk, Anna; Teixeira, Ana I.; Herland, Anna.

In: Biomaterials, Vol. 35, No. 5, 02.2014, p. 1420-1428.

Research output: Contribution to journalArticleScientificpeer-review

Investigating the binding behaviour of two avidin-based testosterone binders using molecular recognition force spectroscopy. / Rangl, Martina; Leitner, Michael; Riihimäki, Tiina; Lehtonen, Soili; Hytönen, Vesa P.; Gruber, Hermann J.; Kulomaa, Markku; Hinterdorfer, Peter; Ebner, Andreas.

In: Journal of Molecular Recognition, Vol. 27, No. 2, 02.2014, p. 92-97.

Research output: Contribution to journalArticleScientificpeer-review

Dry computational approaches for wet medical problems. / Emmert-Streib, Frank; Zhang, Shu Dong; Hamilton, Peter.

In: Journal of Translational Medicine, Vol. 12, No. 1, 26, 25.01.2014.

Research output: Contribution to journalArticleScientificpeer-review

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. / Ji, Junfeng; Sharma, Vivek; Qi, Suxia; Guarch, Meritxell Espino; Zhao, Ping; Luo, Zhiwei; Fan, Wenxia; Wang, Yu; Mbabaali, Faridah; Neculai, Dante; Esteban, Miguel Angel; McPherson, John D.; Batada, Nizar N.

In: Stem Cell Reports, Vol. 2, No. 1, 14.01.2014, p. 44-51.

Research output: Contribution to journalArticleScientificpeer-review

Activities at the Universal Protein Resource (UniProt). / Apweiler, Rolf; Bateman, Alex; Martin, Maria Jesus; O'Donovan, Claire; Magrane, Michele; Alam-Faruque, Yasmin; Alpi, Emanuele; Antunes, Ricardo; Arganiska, Joanna; Casanova, Elisabet Barrera; Bely, Benoit; Bingley, Mark; Bonilla, Carlos; Britto, Ramona; Bursteinas, Borisas; Chan, Wei Mun; Chavali, Gayatri; Cibrian-Uhalte, Elena; Da Silva, Alan; De Giorgi, Maurizio; Fazzini, Francesco; Gane, Paul; Castro, Leyla Garcia; Garmiri, Penelope; Hatton-Ellis, Emma; Hieta, Reija; Huntley, Rachael; Legge, Duncan; Liu, Wudong; Luo, Jie; MacDougall, Alistair; Mutowo, Prudence; Nightingale, Andrew; Orchard, Sandra; Pichler, Klemens; Poggioli, Diego; Pundir, Sangya; Pureza, Luis; Qi, Guoying; Rosanoff, Steven; Sawford, Tony; Shypitsyna, Aleksandra; Turner, Edward; Volynkin, Vladimir; Wardell, Tony; Watkins, Xavier; Corbett, Matt; Donnelly, Mike; Van Rensburg, Pieter; Goujon, Mickael; McWilliam, Hamish; Lopez, Rodrigo; Xenarios, Ioannis; Bougueleret, Lydie; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Aimo, Lucila; Auchincloss, Andrea; Axelsen, Kristian; Bansal, Parit; Baratin, Delphine; Binz, Pierre Alain; Blatter, Marie Claude; Boeckmann, Brigitte; Bolleman, Jerven; Boutet, Emmanuel; Breuza, Lionel; Casal-Casas, Cristina; De Castro, Edouard; Cerutti, Lorenzo; Coudert, Elisabeth; Cuche, Beatrice; Doche, Mikael; Dornevil, Dolnide; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gasteiger, Elisabeth; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; James, Janet; Jungo, Florence; Keller, Guillaume; Lara, Vicente; Lemercier, Philippe; Lew, Jocelyne; Lieberherr, Damien; Lombardot, Thierry; Martin, Xavier; Masson, Patrick; Morgat, Anne; Neto, Teresa; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pozzato, Monica; Pruess, Manuela; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne Lise; Wu, Cathy H.; Arighi, Cecilia N.; Arminski, Leslie; Chen, Chuming; Chen, Yongxing; Garavelli, John S.; Huang, Hongzhan; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Suzek, Baris E.; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Yeh, Lai Su; Yerramalla, Meher Shruti; Zhang, Jian.

In: Nucleic Acids Research, Vol. 42, No. D1, 01.01.2014.

Research output: Contribution to journalArticleScientificpeer-review

Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress. / Oksala, Niku K J; Ekmekçi, F. Güler; Özsoy, Ergi; Kirankaya, Şerife; Kokkola, Tarja; Emecen, Güzin; Lappalainen, Jani; Kaarniranta, Kai; Atalay, Mustafa.

In: REDOX BIOLOGY, Vol. 3, 01.01.2014, p. 25-28.

Research output: Contribution to journalArticleScientificpeer-review

USP22 regulates oncogenic signaling pathways to drive lethal cancer progression. / Schrecengost, Randy S.; Dean, Jeffry L.; Goodwin, Jonathan F.; Schiewer, Matthew J.; Urban, Mark W.; Stanek, Timothy J.; Sussman, Robyn T.; Hicks, Jessica L.; Birbe, Ruth C.; Draganova-Tacheva, Rossitza A.; Visakorpi, Tapio; DeMarzo, Angelo M.; McMahon, Steven B.; Knudsen, Karen E.

In: Cancer Research, Vol. 74, No. 1, 01.01.2014, p. 272-286.

Research output: Contribution to journalArticleScientificpeer-review

Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins. / Maria Cherian, Reeja; Gaunitz, Stefan; Nilsson, Anki; Liu, Jining; Karlsson, Niclas G.; Holgersson, Jan.

In: GLYCOBIOLOGY, Vol. 24, No. 1, 01.2014, p. 26-38.

Research output: Contribution to journalArticleScientificpeer-review

A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach. / Traylor, Matthew; Mäkelä, Kari Matti; Kilarski, Laura L.; Holliday, Elizabeth G.; Devan, William J.; Nalls, Mike A.; Wiggins, Kerri L.; Zhao, Wei; Cheng, Yu Ching; Achterberg, Sefanja; Malik, Rainer; Sudlow, Cathie; Bevan, Steve; Raitoharju, Emma; Oksala, Niku; Thijs, Vincent; Lemmens, Robin; Lindgren, Arne; Slowik, Agnieszka; Maguire, Jane M.; Walters, Matthew; Algra, Ale; Sharma, Pankaj; Attia, John R.; Boncoraglio, Giorgio B.; Rothwell, Peter M.; de Bakker, Paul I W; Bis, Joshua C.; Saleheen, Danish; Kittner, Steven J.; Mitchell, Braxton D.; Rosand, Jonathan; Meschia, James F.; Levi, Christopher; Dichgans, Martin; Lehtimäki, Terho; Lewis, Cathryn M.; Markus, Hugh S.

In: PLOS GENETICS, Vol. 10, No. 7, e1004469, 2014.

Research output: Contribution to journalArticleScientificpeer-review

A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding. / Huang, Qilai; Whitington, Thomas; Gao, Ping; Lindberg, Johan F.; Yang, Yuehong; Sun, Jielin; Väisänen, Marja Riitta; Szulkin, Robert; Annala, Matti; Yan, Jian; Egevad, Lars A.; Zhang, Kai; Lin, Ruizhu; Jolma, Arttu; Nykter, Matti; Manninen, Aki; Wiklund, Fredrik; Vaarala, Markku H.; Visakorpi, Tapio; Xu, Jianfeng; Taipale, Jussi; Wei, Gong Hong.

In: Nature Genetics, Vol. 46, No. 2, 2014, p. 126-135.

Research output: Contribution to journalArticleScientificpeer-review

Autologous adipose stem cells in treatment of female stress urinary incontinence : Results of a pilot study. / Kuismanen, Kirsi; Sartoneva, Reetta; Haimi, Suvi; Mannerström, Bettina; Tomás, Eija; Miettinen, Susanna; Nieminen, Kari.

In: Stem Cells Translational Medicine, Vol. 3, No. 8, 2014, p. 936-941.

Research output: Contribution to journalArticleScientificpeer-review

Common features of chromatin in aging and cancer : Cause or coincidence? / Zane, Linda; Sharma, Vivek; Misteli, Tom.

In: TRENDS IN CELL BIOLOGY, Vol. 24, No. 11, 2014, p. 686-694.

Research output: Contribution to journalReview ArticleScientificpeer-review

Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts. / Křížek, Tomáš; Kubíčková, Anna; Hladílková, Jana; Coufal, Pavel; Heyda, Jan; Jungwirth, Pavel.

In: ELECTROPHORESIS, Vol. 35, No. 5, 2014, p. 617-624.

Research output: Contribution to journalArticleScientificpeer-review

Enhancing our understanding of ways to analyze metagenomes. / Emmert-Streib, Frank.

In: Frontiers in Genetics, Vol. 5, No. APR, Article 108, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy. / Kannan, K.; Vijayan, D.; MubarakAli, D.; Praveenkumar, R.; Ahamed, A. Parveez; Thajuddin, N.

In: Biotechnology, Vol. 13, No. 2, 2014, p. 46-53.

Research output: Contribution to journalArticleScientificpeer-review

Functional and genetic analysis of the colon cancer network. / Emmert-Streib, Frank; de Matos Simoes, Ricardo; Glazko, Galina; McDade, Simon; Haibe-Kains, Benjamin; Holzinger, Andreas; Dehmer, Matthias; Campbell, Frederick.

In: BMC Bioinformatics, Vol. 15, No. Suppl 6, S6, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Indocyanine green : Photosensitizer or chromophore? Still a debate. / Giraudeau, Camille; Moussaron, Albert; Stallivieri, Aurélie; Mordon, Serge; Frochot, Céline.

In: CURRENT MEDICINAL CHEMISTRY, Vol. 21, No. 16, 2014, p. 1871-1897.

Research output: Contribution to journalReview ArticleScientificpeer-review

Inference and validation of predictive gene networks from biomedical literature and gene expression data. / Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Haibe-Kains, Benjamin; Quackenbush, John.

In: Genomics, Vol. 103, No. 5-6, 2014, p. 329-336.

Research output: Contribution to journalArticleScientificpeer-review

Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay. / Näreoja, Tuomas; Ebner, Andreas; Gruber, Hermann J.; Taskinen, Barbara; Kienberger, Ferry; Hänninen, Pekka E.; Hytönen, Vesa P.; Hinterdorfer, Peter; Härmä, Harri.

In: Analytical and Bioanalytical Chemistry, Vol. 406, No. 2, 2014, p. 493-503.

Research output: Contribution to journalArticleScientificpeer-review

Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. / Kannisto, Matti; Aho, Tommi; Karp, Matti; Santala, Ville.

In: Applied and Environmental Microbiology, Vol. 80, No. 22, 2014, p. 7021-7027.

Research output: Contribution to journalArticleScientificpeer-review

Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. / Guglielmetti, Simone; Zanoni, Ivan; Balzaretti, Silvia; Miriani, Matteo; Taverniti, Valentina; de Noni, Ivano; Presti, Ilaria; Stuknyte, Milda; Scarafoni, Alessio; Arioli, Stefania; Iametti, Stefania; Bonomi, Francesco; Mora, Diego; Karp, Matti; Granucci, Francesca.

In: Applied and Environmental Microbiology, Vol. 80, No. 17, 2014, p. 5170-5177.

Research output: Contribution to journalArticleScientificpeer-review

Novel derivatives of bacteriochlorophyll a : Complex formation with albumin and the mechanism of tumor cell photodamage. / Akimova, A. V.; Grin, M. A.; Golovina, G. V.; Kokrashvili, T. A.; Vinogradov, A. M.; Mironov, A. F.; Rychkov, G. N.; Shtil, A. A.; Kuzmin, V. A.; Durandin, N. A.

In: DOKLADY BIOCHEMISTRY AND BIOPHYSICS, Vol. 454, No. 1, 2014, p. 17-20.

Research output: Contribution to journalArticleScientificpeer-review

Novel in vitro cardiovascular constructs composed of vascular-like networks and cardiomyocytes. / Vuorenpää, Hanna; Ikonen, Liisa; Kujala, Kirsi; Huttala, Outi; Sarkanen, Jertta Riina; Ylikomi, Timo; Aalto-Setälä, Katriina; Heinonen, Tuula.

In: IN VITRO CELLULAR AND DEVELOPMENTAL BIOLOGY: ANIMAL, Vol. 50, No. 4, 2014, p. 275-286.

Research output: Contribution to journalArticleScientificpeer-review

Optimal management of metastatic castration-resistant prostate cancer : Highlights from a European Expert Consensus Panel. / Fitzpatrick, John M.; Bellmunt, Joaquim; Fizazi, Karim; Heidenreich, Axel; Sternberg, Cora N.; Tombal, Bertrand; Alcaraz, Antonio; Bahl, Amit; Bracarda, Sergio; Di Lorenzo, Giuseppe; Efstathiou, Eleni; Finn, Stephen P.; Fosså, Sophie; Gillessen, Silke; Kellokumpu-Lehtinen, Pirkko Liisa; Lecouvet, Frédéric E.; Oudard, Stephane; De Reijke, Theo M.; Robson, Craig N.; De Santis, Maria; Seruga, Bostjan; De Wit, Ronald.

In: EUROPEAN JOURNAL OF CANCER, Vol. 50, No. 9, 2014, p. 1617-1627.

Research output: Contribution to journalArticleScientificpeer-review

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer. / Ju, Young S.eok; Alexandrov, Ludmil B.; Gerstung, Moritz; Martincorena, Inigo; Nik-Zainal, Serena; Ramakrishna, Manasa; Davies, Helen R.; Papaemmanuil, Elli; Gundem, Gunes; Shlien, Adam; Bolli, Niccolo; Behjati, Sam; Tarpey, Patrick S.; Nangalia, Jyoti; Massie, Charles E.; Butler, Adam P.; Teague, Jon W.; Vassiliou, George S.; Green, Anthony R.; Du, Ming Qing; Unnikrishnan, Ashwin; Pimanda, John E.; Teh, Bin T.ean; Munshi, Nikhil; Greaves, Mel; Vyas, Paresh; El-Naggar, Adel K.; Santarius, Tom; Collins, V. Peter; Grundy, Richard; Taylor, Jack A.; Hayes, D. Neil; Malkin, David; Foster, Christopher S.; Warren, Anne Y.; Whitaker, Hayley C.; Brewer, Daniel; Eeles, Rosalind; Cooper, Colin; Neal, David; Visakorpi, Tapio; Isaacs, William B.; Bova, G. Steven; Flanagan, Adrienne M.; Futreal, P. Andrew; Lynch, Andy G.; Chinnery, Patrick F.; McDermott, Ultan; Stratton, Michael R.; Campbell, Peter J.

In: eLIFE, Vol. 3, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer risk and nonsteroidal antiinflammatory drug use in the Finnish prostate cancer screening trial. / Veitonmäki, T.; Murtola, T. J.; Määttänen, L.; Taari, K.; Stenman, U. H.; Tammela, T. L.; Auvinen, A.

In: British Journal of Cancer, Vol. 111, No. 7, 2014, p. 1421-1431.

Research output: Contribution to journalArticleScientificpeer-review

Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers. / Hakala, Tommi; Sand, Juhani; Kellokumpu-Lehtinen, Pirkko Liisa; Huhtala, Heini; Leinonen, Rauha; Kholová, Ivana.

In: European Journal of Clinical Investigation, Vol. 44, No. 9, 2014, p. 825-832.

Research output: Contribution to journalArticleScientificpeer-review

Relevance of different prior knowledge sources for inferring gene interaction networks. / Olsen, Catharina; Bontempi, Gianluca; Emmert-Streib, Frank; Quackenbush, John; Haibe-Kains, Benjamin.

In: Frontiers in Genetics, Vol. 5, No. JUN, Article 177, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. / Emmert-Streib, Frank; Zhang, Shu Dong; Hamilton, Peter.

In: Genomics Data, Vol. 2, 2014, p. 37-39.

Research output: Contribution to journalArticleScientificpeer-review

Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing. / Pinon, Perrine; Pärssinen, Jenita; Vazquez, Patricia; Bachmann, Michael; Rahikainen, Rolle; Jacquier, Marie Claude; Azizi, Latifeh; Määttä, Juha A.; Bastmeyer, Martin; Hytönen, Vesa P.; Wehrle-Haller, Bernhard.

In: Journal of Cell Biology, Vol. 205, No. 2, 2014, p. 265-281.

Research output: Contribution to journalArticleScientificpeer-review

TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. / Guglielmetti, Simone; Balzaretti, Silvia; Taverniti, Valentina; Miriani, Matteo; Milani, Christian; Scarafoni, Alessio; Corona, Silvia; Ciranna, Alessandro; Arioli, Stefania; Santala, Ville; Iametti, Stefania; Bonomi, Francesco; Ventura, Marco; Mora, Diego; Karp, Matti.

In: Applied and Environmental Microbiology, Vol. 80, No. 17, 2014, p. 5161-5169.

Research output: Contribution to journalArticleScientificpeer-review

The gene regulatory network for breast cancer : Integrated regulatory landscape of cancer hallmarks. / Emmert-Streib, Frank; Simoes, Ricardo de Matos; Mullan, Paul; Haibe-Kains, Benjamin; Dehmer, Matthias.

In: Frontiers in Genetics, Vol. 5, No. FEB, Article 15, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Untangling statistical and biological models to understand network inference : The need for a genomics network ontology. / Emmert-Streib, Frank; Dehmer, Matthias; Haibe-Kains, Benjamin.

In: Frontiers in Genetics, Vol. 5, No. AUG, article 229, 2014.

Research output: Contribution to journalArticleScientificpeer-review

Large-scale evaluation of molecular descriptors by means of clustering. / Dehmer, Matthias; Emmert-Streib, Frank; Tripathi, Shailesh.

In: PLoS ONE, Vol. 8, No. 12, e83956, 31.12.2013.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS. / Häkkinen, Merja R.; Roine, Antti; Auriola, Seppo; Tuokko, Antti; Veskimäe, Erik; Keinänen, Tuomo A.; Lehtimäki, Terho; Oksala, Niku; Vepsäläinen, Jouko.

In: JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, Vol. 941, 15.12.2013, p. 81-89.

Research output: Contribution to journalArticleScientificpeer-review

Netmes : Assessing gene network inference algorithms by network-based measures. / Altay, Gökmen; Kurt, Zeyneb; Dehmer, Matthias; Emmert-Streib, Frank.

In: Evolutionary Bioinformatics, Vol. 10, 07.12.2013.

Research output: Contribution to journalArticleScientificpeer-review

The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase. / Anantharajan, Jothi; Koski, M. Kristian; Kursula, Petri; Hieta, Reija; Bergmann, Ulrich; Myllyharju, Johanna; Wierenga, Rik K.

In: Structure, Vol. 21, No. 12, 03.12.2013, p. 2107-2118.

Research output: Contribution to journalArticleScientificpeer-review

Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS). / Oksala, Niku; Pärssinen, Jenita; Seppälä, Ilkka; Raitoharju, Emma; Ivana, Kholova; Hernesniemi, Jussi; Lyytikäinen, Leo Pekka; Levula, Mari; Mäkelä, Kari Matti; Sioris, Thanos; Kähönen, Mika; Laaksonen, Reijo; Hytönen, Vesa; Lehtimäki, Terho.

In: Circulation: Cardiovascular Genetics, Vol. 6, No. 6, 12.2013, p. 579-587.

Research output: Contribution to journalArticleScientificpeer-review

MicroRNAs in the atherosclerotic plaque. / Raitoharju, Emma; Oksala, Niku; Lehtimäki, Terho.

In: Clinical Chemistry, Vol. 59, No. 12, 12.2013, p. 1708-1721.

Research output: Contribution to journalReview ArticleScientificpeer-review

The diverse role of miR-31 in regulating cancer associated phenotypes. / Laurila, Eeva M.; Kallioniemi, Anne.

In: Genes Chromosomes and Cancer, Vol. 52, No. 12, 12.2013, p. 1103-1113.

Research output: Contribution to journalArticleScientificpeer-review

Membrane permeation induced by aggregates of human islet amyloid polypeptides. / Poojari, Chetan; Xiao, Dequan; Batista, Victor S.; Strodel, Birgit.

In: Biophysical Journal, Vol. 105, No. 10, 19.11.2013, p. 2323-2332.

Research output: Contribution to journalArticleScientificpeer-review

Chk1 targeting reactivates PP2A tumor suppressor activity in cancer cells. / Khanna, Anchit; Kauko, Otto; Böckelman, Camilla; Laine, Anni; Schreck, Ilona; Partanen, Johanna I.; Szwajda, Agnieszka; Bormann, Stefanie; Bilgen, Turker; Helenius, Merja; Pokharel, Yuba R.; Pimanda, John; Russel, Mike R.; Haglund, Caj; Cole, Kristina A.; Klefström, Juha; Aittokallio, Tero; Weiss, Carsten; Ristimäki, Ari; Visakorpi, Tapio; Westermarck, Jukka.

In: Cancer Research, Vol. 73, No. 22, 15.11.2013, p. 6757-6769.

Research output: Contribution to journalArticleScientificpeer-review

Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations. / Poojari, Chetan; Strodel, Birgit.

In: PLoS ONE, Vol. 8, No. 11, e78399, 07.11.2013.

Research output: Contribution to journalArticleScientificpeer-review

Bi-weekly paclitaxel and capecitabine as a second- Or third-line treatment for advanced breast cancer : A pilot study. / Kellokumpu-Lehtinen, Pirkko Liiisa; Tuunanen, Tuija; Kautio, Anna Liisa; Lehtinen, Ilari; Tanner, Minna.

In: Anticancer Research, Vol. 33, No. 11, 11.2013, p. 4941-4945.

Research output: Contribution to journalArticleScientificpeer-review

Zebavidin - An Avidin-Like Protein from Zebrafish. / Taskinen, Barbara; Zmurko, Joanna; Ojanen, Markus; Kukkurainen, Sampo; Parthiban, Marimuthu; Määttä, Juha A E; Leppiniemi, Jenni; Jänis, Janne; Parikka, Mataleena; Turpeinen, Hannu; Rämet, Mika; Pesu, Marko; Johnson, Mark S.; Kulomaa, Markku S.; Airenne, Tomi T.; Hytönen, Vesa P.

In: PLoS ONE, Vol. 8, No. 10, e77207, 24.10.2013.

Research output: Contribution to journalArticleScientificpeer-review

Reversible biofunctionalization of surfaces with a switchable mutant of avidin. / Pollheimer, Philipp; Taskinen, Barbara; Scherfler, Andreas; Gusenkov, Sergey; Creus, Marc; Wiesauer, Philipp; Zauner, Dominik; Schöfberger, Wolfgang; Schwarzinger, Clemens; Ebner, Andreas; Tampé, Robert; Stutz, Hanno; Hytönen, Vesa P.; Gruber, Hermann J.

In: Bioconjugate Chemistry, Vol. 24, No. 10, 16.10.2013, p. 1656-1668.

Research output: Contribution to journalArticleScientificpeer-review

Exogenously added BMP-6, BMP-7 and VEGF may not enhance the osteogenic differentiation of human adipose stem cells. / Kyllönen, Laura; Haimi, Suvi; Säkkinen, Janne; Kuokkanen, Hannu; Mannerström, Bettina; Sándor, George K B; Miettinen, Susanna.

In: GROWTH FACTORS, Vol. 31, No. 5, 10.2013, p. 141-153.

Research output: Contribution to journalArticleScientificpeer-review

Fallout from the Chernobyl accident and overall cancer incidence in Finland. / Kurttio, Päivi; Seppä, Karri; Pasanen, Kari; Patama, Toni; Auvinen, Anssi; Pukkala, Eero; Heinävaara, Sirpa; Arvela, Hannu; Hakulinen, Timo.

In: CANCER EPIDEMIOLOGY, Vol. 37, No. 5, 10.2013, p. 585-592.

Research output: Contribution to journalArticleScientificpeer-review

Fine mapping of 11q13.5 identifies regions associated with prostate cancer and prostate cancer death. / Nurminen, Riikka; Lehtonen, Rainer; Auvinen, Anssi; Tammela, Teuvo L J; Wahlfors, Tiina; Schleutker, Johanna.

In: EUROPEAN JOURNAL OF CANCER, Vol. 49, No. 15, 10.2013, p. 3335-3343.

Research output: Contribution to journalArticleScientificpeer-review

Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine : The atheroremo consortium. / Kleber, Marcus E.; Seppälä, Ilkka; Pilz, Stefan; Hoffmann, Michael M.; Tomaschitz, Andreas; Oksala, Niku; Raitoharju, Emma; Lyytikäinen, Leo Pekka; Mäkelä, Kari Matti; Laaksonen, Reijo; Kähönen, Mika; Raitakari, Olli T.; Huang, Jie; Kienreich, Katharina; Fahrleitner-Pammer, Astrid; Drechsler, Christiane; Krane, Vera; Boehm, Bernhard O.; Koenig, Wolfgang; Wanner, Christoph; Lehtimäki, Terho; März, Winfried; Meinitzer, Andreas.

In: Circulation: Cardiovascular Genetics, Vol. 6, No. 5, 10.2013, p. 505-513.

Research output: Contribution to journalArticleScientificpeer-review

BMP4 inhibits the proliferation of breast cancer cells and induces an MMP-dependent migratory phenotype in MDA-MB-231 cells in 3D environment. / Ampuja, Minna; Jokimäki, Riikka; Juuti-Uusitalo, Kati; Rodriguez-Martinez, Alejandra; Alarmo, Emma Leena; Kallioniemi, Anne.

In: BMC Cancer, Vol. 13, 429, 22.09.2013.

Research output: Contribution to journalArticleScientificpeer-review

The nucleolus as a stress response organelle. / Lindström, Mikael S.; Latonen, Leena.

Proteins of the Nucleolus: Regulation, Translocation, & Biomedical Functions. Vol. 9789400758186 Springer Netherlands, 2013. p. 251-273.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation. / Högnäs, Gunilla; Hämälistö, Saara; Rilla, Kirsi; Laine, Jukka O.; Vilkki, Vesa; Murumägi, Astrid; Edgren, Henrik; Kallioniemi, Olli; Ivaska, Johanna.

In: Carcinogenesis, Vol. 34, No. 9, 09.2013, p. 2000-2009.

Research output: Contribution to journalArticleScientificpeer-review

Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer : A preclinical study on the dunning R3327-AT2 rat tumor model. / Bozzini, G.; Colin, P.; Betrouni, N.; Maurage, C. A.; Leroy, X.; Simonin, S.; Martin-Schmitt, C.; Villers, A.; Mordon, S.

In: PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vol. 10, No. 3, 09.2013, p. 296-303.

Research output: Contribution to journalArticleScientificpeer-review

Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007. / Rahu, Kaja; Hakulinen, Timo; Smailyte, Giedre; Stengrevics, Aivars; Auvinen, Anssi; Inskip, Peter D.; Boice, John D.; Rahu, Mati.

In: EUROPEAN JOURNAL OF CANCER, Vol. 49, No. 13, 09.2013, p. 2926-2933.

Research output: Contribution to journalArticleScientificpeer-review

Somatic alterations contributing to metastasis of a castration-resistant prostate cancer. / Nickerson, Michael L.; Im, Kate M.; Misner, Kevin J.; Tan, Wei; Lou, Hong; Gold, Bert; Wells, David W.; Bravo, Hector C.; Fredrikson, Karin M.; Harkins, Timothy T.; Milos, Patrice; Zbar, Berton; Linehan, W. Marston; Yeager, Meredith; Andresson, Thorkell; Dean, Michael; Bova, G. Steven.

In: HUMAN MUTATION, Vol. 34, No. 9, 09.2013, p. 1231-1241.

Research output: Contribution to journalArticleScientificpeer-review

Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner. / Dixit, Deobrat; Ghildiyal, Ruchi; Anto, Nikhil Ponnor; Ghosh, Sourav; Sharma, Vivek; Sen, Ellora.

In: Cancer Letters, Vol. 336, No. 2, 19.08.2013, p. 347-358.

Research output: Contribution to journalArticleScientificpeer-review

Mechanisms of acceleration and retardation of water dynamics by ions. / Stirnemann, Guillaume; Wernersson, Erik; Jungwirth, Pavel; Laage, Damien.

In: Journal of the American Chemical Society, Vol. 135, No. 32, 14.08.2013, p. 11824-11831.

Research output: Contribution to journalArticleScientificpeer-review

Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. / Chen, Jing; Xi, Jiefeng; Tian, Yuan; Bova, George Steven; Zhang, Hui.

In: Proteomics, Vol. 13, No. 15, 08.2013, p. 2268-2277.

Research output: Contribution to journalArticleScientificpeer-review

Stress Proteins and Heat Shock Proteins : Role in Muscle Building and Sports Nutrition. / Venojärvi, Mika; Oksala, Niku; Kinnunen, Susanna; Atalay, Mustafa.

Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength. Elsevier Inc., 2013. p. 229-235.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer. / Loi, Sherene; Michiels, Stefan; Lambrechts, Diether; Fumagalli, Debora; Claes, Bart; Kellokumpu-Lehtinen, Pirkko Liisa; Bono, Petri; Kataja, Vesa; Piccart, Martine J.; Joensuu, Heikki; Sotiriou, Christos.

In: JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vol. 105, No. 13, 03.07.2013, p. 960-967.

Research output: Contribution to journalArticleScientificpeer-review

Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering. / Diban, Nazely; Haimi, Suvi; Bolhuis-Versteeg, Lydia; Teixeira, Sandra; Miettinen, Susanna; Poot, André; Grijpma, Dirk; Stamatialis, Dimitrios.

In: Journal of Membrane Science, Vol. 438, 01.07.2013, p. 29-37.

Research output: Contribution to journalArticleScientificpeer-review

Genetic markers associated with early cancer-specific mortality following prostatectomy. / Liu, Wennuan; Xie, Chunmei C.; Thomas, Christopher Y.; Kim, Seong Tae; Lindberg, Johan; Egevad, Lars; Wang, Zhong; Zhang, Zheng; Sun, Jishan; Sun, Jielin; Koty, Patrick P.; Kader, A. Karim; Cramer, Scott D.; Bova, G. Steven; Zheng, S. Lilly; Grönberg, Henrik; Isaacs, William B.; Xu, Jianfeng.

In: Cancer, Vol. 119, No. 13, 01.07.2013, p. 2405-2412.

Research output: Contribution to journalArticleScientificpeer-review

Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men. / Kosola, Jussi; Vaara, Jani P.; Ahotupa, Markku; Kyröläinen, Heikki; Santtila, Matti; Oksala, Niku; Atalay, Mustafa; Vasankari, Tommi.

In: METABOLISM: CLINICAL AND EXPERIMENTAL, Vol. 62, No. 7, 07.2013, p. 992-999.

Research output: Contribution to journalArticleScientificpeer-review

The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins. / Leppiniemi, Jenni; Meir, Amit; Kahkonen, Niklas; Kukkurainen, Sampo; Maatta, Juha A.; Ojanen, Markus; Janis, Janne; Kulomaa, Markku S.; Livnah, Oded; Hytonen, Vesa P.

In: PROTEIN SCIENCE, Vol. 22, No. 7, 07.2013, p. 980-994.

Research output: Contribution to journalArticleScientificpeer-review

Non-coding RNAs in DNA damage and repair. / Sharma, Vivek; Misteli, Tom.

In: FEBS Letters, Vol. 587, No. 13, 27.06.2013, p. 1832-1839.

Research output: Contribution to journalReview ArticleScientificpeer-review

Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks. / Kiiski, Heikki; Äänismaa, Riikka; Tenhunen, Jyrki; Hagman, Sanna; Ylä-Outinen, Laura; Aho, Antti; Yli-Hankala, Arvi; Bendel, Stepani; Skottman, Heli; Narkilahti, Susanna.

In: Biology Open, Vol. 2, No. 6, 15.06.2013, p. 605-612.

Research output: Contribution to journalArticleScientificpeer-review

Movement of NH3 through the human urea transporter B : A new gas channel. / Ryan Geyer, R.; Musa-Aziz, Raif; Enkavi, Giray; Mahinthichaichan, P.; Tajkhorshid, Emad; Boron, Walter F.

In: AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, Vol. 304, No. 12, 15.06.2013, p. 1447-1457.

Research output: Contribution to journalArticleScientificpeer-review

Endovenous laser treatment of the great saphenous vein : Measurement of the pullback speed of the fiber by magnetic tracking. / Mordon, S. R.; Vuylsteke, M. E.; Mahieu, P.; Betrouni, N.

In: IRBM, Vol. 34, No. 3, 06.2013, p. 252-256.

Research output: Contribution to journalArticleScientificpeer-review

Weekly paclitaxel-An effective treatment for advanced breast cancer. / Kellokumpu-Lehtinen, Pirkko; Tuunanen, Tuija; Asola, Raija; Elomaa, Liisa; Heikkinen, Mirja; Kokko, Riitta; Järvenpää, Ritva; Lehtinen, Ilari; Maiche, Abdel; Kaleva-Kerola, Jaana; Huusko, Mauri; Möykkynen, Kari; Ala-Luhtala, Timo.

In: Anticancer Research, Vol. 33, No. 6, 06.2013, p. 2623-2628.

Research output: Contribution to journalArticleScientificpeer-review

Prostate cancer mortality in the finnish randomized screening trial. / Kilpeläinen, Tuomas P.; Tammela, Teuvo L.; Malila, Nea; Hakama, Matti; Santti, Henrikki; Määttänen, Liisa; Stenman, Ulf Håkan; Kujala, Paula; Auvinen, Anssi.

In: JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vol. 105, No. 10, 15.05.2013, p. 719-725.

Research output: Contribution to journalArticleScientificpeer-review

Interfacing cellular networks of S. cerevisiae and E. coli : Connecting dynamic and genetic information. / Matos Simoes, Ricardo de; Dehmer, Matthias; Emmert-Streib, Frank.

In: BMC Genomics, Vol. 14, No. 1, 324, 11.05.2013.

Research output: Contribution to journalArticleScientificpeer-review

Overview of Public Cancer Databases, Resources, and Visualization Tools. / Emmert-Streib, Frank; De Matos Simoes, Ricardo; Tripathi, Shailesh; Dehmer, Matthias.

Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Vol. 3 Wiley-VCH, 2013. p. 27-40.

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Statistical Diagnostics for Cancer : Analyzing High-Dimensional Data. / Emmert-Streib, Frank (Editor); Dehmer, Matthias (Editor).

Wiley-VCH, 2013. 292 p.

Research output: Book/ReportAnthologyScientificpeer-review

Ensuring the statistical soundness of competitive gene set approaches : Gene filtering and genome-scale coverage are essential. / Tripathi, Shailesh; Glazko, Galina V.; Emmert-Streib, Frank.

In: Nucleic Acids Research, Vol. 41, No. 7, 04.2013.

Research output: Contribution to journalArticleScientificpeer-review

Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis. / Simpson, Claire L.; Cropp, Cheryl D.; Wahlfors, Tiina; George, Asha; Jones, Marypat S.; Harper, Ursula; Ponciano-Jackson, Damaris; Tammela, Teuvo; Schleutker, Johanna; Bailey-Wilson, Joan E.

In: EUROPEAN JOURNAL OF HUMAN GENETICS, Vol. 21, No. 4, 04.2013, p. 437-443.

Research output: Contribution to journalArticleScientificpeer-review

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. / Eeles, Rosalind A.; Olama, Ali Amin Al; Benlloch, Sara; Saunders, Edward J.; Leongamornlert, Daniel A.; Tymrakiewicz, Malgorzata; Ghoussaini, Maya; Luccarini, Craig; Dennis, Joe; Jugurnauth-Little, Sarah; Dadaev, Tokhir; Neal, David E.; Hamdy, Freddie C.; Donovan, Jenny L.; Muir, Ken; Giles, Graham G.; Severi, Gianluca; Wiklund, Fredrik; Gronberg, Henrik; Haiman, Christopher A.; Schumacher, Fredrick; Henderson, Brian E.; Le Marchand, Loic; Lindstrom, Sara; Kraft, Peter; Hunter, David J.; Gapstur, Susan; Chanock, Stephen J.; Berndt, Sonja I.; Albanes, Demetrius; Andriole, Gerald; Schleutker, Johanna; Weischer, Maren; Canzian, Federico; Riboli, Elio; Key, Tim J.; Travis, Ruth C.; Campa, Daniele; Ingles, Sue A.; John, Esther M.; Hayes, Richard B.; Pharoah, Paul D.P.; Pashayan, Nora; Khaw, Kay Tee; Stanford, Janet L.; Ostrander, Elaine A.; Signorello, Lisa B.; Thibodeau, Stephen N.; Schaid, Dan; Maier, Christiane; Vogel, Walther; Kibel, Adam S.; Cybulski, Cezary; Lubinski, Jan; Cannon-Albright, Lisa; Brenner, Hermann; Park, Jong Y.; Kaneva, Radka; Batra, Jyotsna; Spurdle, Amanda B.; Clements, Judith A.; Teixeira, Manuel R.; Dicks, Ed; Lee, Andrew; Dunning, Alison M.; Baynes, Caroline; Conroy, Don; Maranian, Melanie J.; Ahmed, Shahana; Govindasami, Koveela; Guy, Michelle; Wilkinson, Rosemary A.; Sawyer, Emma J.; Morgan, Angela; Dearnaley, David P.; Horwich, Alan; Huddart, Robert A.; Khoo, Vincent S.; Parker, Christopher C.; Van As, Nicholas J.; Woodhouse, Christopher J.; Thompson, Alan; Dudderidge, Tim; Ogden, Chris; Cooper, Colin S.; Lophatananon, Artitaya; Cox, Angela; Southey, Melissa C.; Hopper, John L.; English, Dallas R.; Aly, Markus; Adolfsson, Jan; Xu, Jiangfeng; Zheng, Siqun L.; Yeager, Meredith; Kaaks, Rudolf; Diver, W. Ryan; Gaudet, Mia M.; Stern, Mariana C.; Corral, Roman; Joshi, Amit D.; Shahabi, Ahva; Wahlfors, Tiina; Tammela, Teuvo L.J.; Auvinen, Anssi; Virtamo, Jarmo; Klarskov, Peter; Nordestgaard, Børge G.; Røder, M. Andreas; Nielsen, Sune F.; Bojesen, Stig E.; Siddiq, Afshan; Fitzgerald, Liesel M.; Kolb, Suzanne; Kwon, Erika M.; Karyadi, Danielle M.; Blot, William J.; Zheng, Wei; Cai, Qiuyin; McDonnell, Shannon K.; Rinckleb, Antje E.; Drake, Bettina; Colditz, Graham; Wokolorczyk, Dominika; Stephenson, Robert A.; Teerlink, Craig; Muller, Heiko; Rothenbacher, Dietrich; Sellers, Thomas A.; Lin, Hui Yi; Slavov, Chavdar; Mitev, Vanio; Lose, Felicity; Srinivasan, Srilakshmi; Maia, Sofia; Paulo, Paula; Lange, Ethan; Cooney, Kathleen A.; Antoniou, Antonis C.; Vincent, Daniel; Bacot, François; Tessier, Daniel C.; Kote-Jarai, Zsofia; Easton, Douglas F.

In: Nature Genetics, Vol. 45, No. 4, 04.2013, p. 385-391.

Research output: Contribution to journalArticleScientificpeer-review

Obesity and physical inactivity are related to impaired physical health of breast cancer survivors. / Elme, Anneli; Utriainen, Meri; Kellokumpu-Lehtinen, Pirkko; Palva, Tiina; Luoto, Riitta; Nikander, Riku; Huovinen, Riikka; Kautiainen, Hannu; Järvenpää, Salme; Penttinen, Heidi M.; Vehmanen, Leena; Jääskeläinen, Anna Stina; Ruohola, Johanna; Blomqvist, Carl; Saarto, Tiina.

In: Anticancer Research, Vol. 33, No. 4, 04.2013, p. 1595-1602.

Research output: Contribution to journalArticleScientificpeer-review

Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms. / Tossavainen, Helena; Helppolainen, Satu H.; Määttä, Juha A E; Pihlajamaa, Tero; Hytönen, Vesa P.; Kulomaa, Markku S.; Permi, Perttu.

In: BIOMOLECULAR NMR ASSIGNMENTS, Vol. 7, No. 1, 04.2013, p. 35-38.

Research output: Contribution to journalArticleScientificpeer-review

Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model. / Elamin, Elhaseen; Masclee, Ad; Juuti-Uusitalo, Kati; van IJzendoorn, Sven; Troost, Freddy; Pieters, Harm Jan; Dekker, Jan; Jonkers, Daisy.

In: PLoS ONE, Vol. 8, No. 3, e58561, 19.03.2013.

Research output: Contribution to journalArticleScientificpeer-review

Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis. / Bruchmann, Anja; Roller, Corinna; Walther, Tamara Vanessa; Schäfer, Georg; Lehmusvaara, Sara; Visakorpi, Tapio; Klocker, Helmut; Cato, Andrew C B; Maddalo, Danilo.

In: BMC Cancer, Vol. 13, 96, 01.03.2013.

Research output: Contribution to journalArticleScientificpeer-review

Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level. / Veitonmäki, Thea; Tammela, Teuvo L J; Auvinen, Anssi; Murtola, Teemu J.

In: EUROPEAN JOURNAL OF CANCER, Vol. 49, No. 4, 03.2013, p. 938-945.

Research output: Contribution to journalArticleScientificpeer-review

Structural Properties and Complexity of a New Network Class : Collatz Step Graphs. / Emmert-Streib, Frank.

In: PLoS ONE, Vol. 8, No. 2, e56461, 19.02.2013.

Research output: Contribution to journalArticleScientificpeer-review

An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning. / Betrouni, N.; Nevoux, P.; Leroux, B.; Colin, P.; Puech, P.; Mordon, S.

In: Medical Physics, Vol. 40, No. 2, 022701, 02.2013.

Research output: Contribution to journalArticleScientificpeer-review

How the amyloid-β peptide and membranes affect each other : An extensive simulation study. / Poojari, Chetan; Kukol, Andreas; Strodel, Birgit.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1828, No. 2, 02.2013, p. 327-339.

Research output: Contribution to journalArticleScientificpeer-review

Image-guided laser therapies for prostate cancer. / Betrouni, N.; Colin, P.; Bozzini, G.; Mordon, S.

In: IRBM, Vol. 34, No. 1, 02.2013, p. 28-32.

Research output: Contribution to journalArticleScientificpeer-review

Visualizing functional motions of membrane transporters with molecular dynamics simulations. / Shaikh, Saher A.; Li, Jing; Enkavi, Giray; Wen, Po Chao; Huang, Zhijian; Tajkhorshid, Emad.

In: Biochemistry, Vol. 52, No. 4, 29.01.2013, p. 569-587.

Research output: Contribution to journalArticleScientificpeer-review

Gene ontology annotations and resources. / Blake, J. A.; Dolan, M.; Drabkin, H.; Hill, D. P.; Ni, Li; Sitnikov, D.; Bridges, S.; Burgess, S.; Buza, T.; McCarthy, F.; Peddinti, D.; Pillai, L.; Carbon, S.; Dietze, H.; Ireland, A.; Lewis, S. E.; Mungall, C. J.; Gaudet, P.; Chisholm, R. L.; Fey, P.; Kibbe, W. A.; Basu, S.; Siegele, D. A.; McIntosh, B. K.; Renfro, D. P.; Zweifel, A. E.; Hu, J. C.; Brown, N. H.; Tweedie, S.; Alam-Faruque, Y.; Apweiler, R.; Auchinchloss, A.; Axelsen, K.; Bely, B.; Blatter, M. C.; Bonilla, C.; Bougueleret, L.; Boutet, E.; Breuza, L.; Bridge, A.; Chan, W. M.; Chavali, G.; Coudert, E.; Dimmer, E.; Estreicher, A.; Famiglietti, L.; Feuermann, M.; Gos, A.; Gruaz-Gumowski, N.; Hieta, R.; Hinz, U.; Hulo, C.; Huntley, R.; James, J.; Jungo, F.; Keller, G.; Laiho, K.; Legge, D.; Lemercier, P.; Lieberherr, D.; Magrane, M.; Martin, M. J.; Masson, P.; Mutowo-Muellenet, P.; O'Donovan, C.; Pedruzzi, I.; Pichler, K.; Poggioli, D.; Porras Millan, P.; Poux, S.; Rivoire, C.; Roechert, B.; Sawford, T.; Schneider, M.; Stutz, A.; Sundaram, S.; Tognolli, M.; Xenarios, I.; Foulger, R.; Lomax, J.; Roncaglia, P.; Khodiyar, V. K.; Lovering, R. C.; Talmud, P. J.; Chibucos, M.; Gwinn Giglio, M.; Chang, H. Y.; Hunter, S.; McAnulla, C.; Mitchell, A.; Sangrador, A.; Stephan, R.; Harris, M. A.; Oliver, S. G.; Rutherford, K.; Wood, V.; Bahler, J.; Lock, A.; Kersey, P. J.; McDowall, M. D.; Staines, D. M.; Dwinell, M.; Shimoyama, M.; Laulederkind, S.; Hayman, T.; Wang, S. J.; Petri, V.; Lowry, T.; D'Eustachio, P.; Matthews, L.; Balakrishnan, R.; Binkley, G.; Cherry, J. M.; Costanzo, M. C.; Dwight, S. S.; Engel, S. R.; Fisk, D. G.; Hitz, B. C.; Hong, E. L.; Karra, K.; Miyasato, S. R.; Nash, R. S.; Park, J.; Skrzypek, M. S.; Weng, S.; Wong, E. D.; Berardini, T. Z.; Li, D.; Huala, E.; Mi, H.; Thomas, P. D.; Chan, J.; Kishore, R.; Sternberg, P.; Van Auken, K.; Howe, D.; Westerfield, M.

In: Nucleic Acids Research, Vol. 41, No. D1, 01.01.2013.

Research output: Contribution to journalArticleScientificpeer-review

Update on activities at the Universal Protein Resource (UniProt) in 2013. / Apweiler, Rolf; Martin, Maria Jesus; O'Donovan, Claire; Magrane, Michele; Alam-Faruque, Yasmin; Alpi, Emanuela; Antunes, Ricardo; Arganiska, Joanna; Casanova, Elisabet Barrera; Bely, Benoit; Bingley, Mark; Bonilla, Carlos; Britto, Ramona; Bursteinas, Borisas; Chan, Wei Mun; Chavali, Gayatri; Cibrian-Uhalte, Elena; Da Silva, Alan; De Giorgi, Maurizio; Dimmer, Emily; Fazzini, Francesco; Gane, Paul; Fedotov, Alexander; Castro, Leyla Garcia; Garmiri, Penelope; Hatton-Ellis, Emma; Hieta, Reija; Huntley, Rachael; Jacobsen, Julius; Jones, Rachel; Legge, Duncan; Liu, Wudong; Luo, Jie; MacDougall, Alistair; Mutowo, Prudence; Nightingale, Andrew; Orchard, Sandra; Patient, Samuel; Pichler, Klemens; Poggioli, Diego; Pundir, Sangya; Pureza, Luis; Qi, Guoying; Rosanoff, Steven; Sawford, Tony; Sehra, Harminder; Turner, Edward; Volynkin, Vladimir; Wardell, Tony; Watkins, Xavier; Zellner, Hermann; Corbett, Matt; Donnelly, Mike; Van Rensburg, Pieter; Goujon, Mickael; McWilliam, Hamish; Lopez, Rodrigo; Xenarios, Ioannis; Bougueleret, Lydie; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Auchincloss, Andrea; Axelsen, Kristian; Bansal, Parit; Baratin, Delphine; Binz, Pierre Alain; Blatter, Marie Claude; Boeckmann, Brigitte; Bolleman, Jerven; Boutet, Emmanuel; Breuza, Lionel; De Castro, Edouard; Cerutti, Lorenzo; Coudert, Elisabeth; Cuche, Beatrice; Doche, Mikael; Dornevil, Dolnide; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gasteiger, Elisabeth; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; James, Janet; Jungo, Florence; Keller, Guillaume; Lara, Vicente; Lemercier, Philippe; Lew, Jocelyne; Lieberherr, Damien; Martin, Xavier; Masson, Patrick; Morgat, Anne; Neto, Teresa; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pozzato, Monica; Pruess, Manuela; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne Lise; Zerara, Mohamed; Wu, Cathy H.; Arighi, Cecilia N.; Arminski, Leslie; Chen, Chuming; Chen, Yongxing; Huang, Hongzhan; Kukreja, Abhishek; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Natarajan, Thanemozhi G.; Roberts, Natalia V.; Suzek, Baris E.; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Yeh, Lai Su; Yerramalla, Meher Shruti; Zhang, Jian.

In: Nucleic Acids Research, Vol. 41, No. D1, 01.01.2013.

Research output: Contribution to journalArticleScientificpeer-review

A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. / Al Olama, Ali Amin; Kote-Jarai, Zsofia; Schumacher, Fredrick R.; Wiklund, Fredrik; Berndt, Sonja I.; Benlloch, Sara; Giles, Graham G.; Severi, Gianluca; Neal, David E.; Hamdy, Freddie C.; Donovan, Jenny L.; Hunter, David J.; Henderson, Brian E.; Thun, Michael J.; Gaziano, Michael; Giovannucci, Edward L.; Siddiq, Afshan; Travis, Ruth C.; Cox, David G.; Canzian, Federico; Riboli, Elio; Key, Timothy J.; Andriole, Gerald; Albanes, Demetrius; Hayes, Richard B.; Schleutker, Johanna; Auvinen, Anssi; Tammela, Teuvo L J; Weischer, Maren; Stanford, Janet L.; Ostrander, Elaine A.; Cybulski, Cezary; Lubinski, Jan; Thibodeau, Stephen N.; Schaid, Daniel J.; Sorensen, Karina D.; Batra, Jyotsna; Clements, Judith A.; Chambers, Suzanne; Aitken, Joanne; Gardiner, Robert A.; Maier, Christiane; Vogel, Walther; Dörk, Thilo; Brenner, Hermann; Habuchi, Tomonori; Ingles, Sue; John, Esther M.; Dickinson, Joanne L.; Cannon-Albright, Lisa; Teixeira, Manuel R.; Kaneva, Radka; Zhang, Hong Wei; Lu, Yong Jie; Park, Jong Y.; Cooney, Kathleen A.; Muir, Kenneth R.; Leongamornlert, Daniel A.; Saunders, Edward; Tymrakiewicz, Malgorzata; Mahmud, Nadiya; Guy, Michelle; Govindasami, Koveela; O'Brien, Lynne T.; Wilkinson, Rosemary A.; Hall, Amanda L.; Sawyer, Emma J.; Dadaev, Tokhir; Morrison, Jonathan; Dearnaley, David P.; Horwich, Alan; Huddart, Robert A.; Khoo, Vincent S.; Parker, Christopher C.; Van As, Nicholas; Woodhouse, Christopher J.; Thompson, Alan; Dudderidge, Tim; Ogden, Chris; Cooper, Colin S.; Lophatonanon, Artitaya; Southey, Melissa C.; Hopper, John L.; English, Dallas; Virtamo, Jarmo; Marchand, Loic Le; Campa, Daniele; Kaaks, Rudolf; Lindstrom, Sara; Diver, W. Ryan; Gapstur, Susan; Yeager, Meredith; Cox, Angela; Stern, Mariana C.; Corral, Roman; Aly, Markus; Isaacs, William; Adolfsson, Jan; Xu, Jianfeng; Zheng, S. Lilly; Wahlfors, Tiina; Taari, Kimmo; Kujala, Paula; Klarskov, Peter; Nordestgaard, Børge G.; Røder, M. Andreas; Frikke-Schmidt, Ruth; Bojesen, Stig E.; FitzGerald, Liesel M.; Kolb, Suzanne; Kwon, Erika M.; Karyadi, Danielle M.; Orntoft, Torben Falck; Borre, Michael; Rinckleb, Antje; Luedeke, Manuel; Herkommer, Kathleen; Meyer, Andreas; Serth, Jü rgen; Marthick, James R.; Patterson, Briony; Wokolorczyk, Dominika; Spurdle, Amanda; Lose, Felicity; McDonnell, Shannon K.; Joshi, Amit D.; Shahabi, Ahva; Pinto, Pedro; Santos, Joana; Ray, Ana; Sellers, Thomas A.; Lin, Hui Yi; Stephenson, Robert A.; Teerlink, Craig; Muller, Heiko; Rothenbacher, Dietrich; Tsuchiya, Norihiko; Narita, Shintaro; Cao, Guang Wen; Slavov, Chavdar; Mitev, Vanio; Chanock, Stephen; Gronberg, Henrik; Haiman, Christopher A.; Kraft, Peter; Easton, Douglas F.; Eeles, Rosalind A.

In: HUMAN MOLECULAR GENETICS, Vol. 22, No. 2, dds425, 01.2013, p. 408-415.

Research output: Contribution to journalArticleScientificpeer-review

HOXB13 is a susceptibility gene for prostate cancer : Results from the International Consortium for Prostate Cancer Genetics (ICPCG). / Xu, Jianfeng; Lange, Ethan M.; Lu, Lingyi; Zheng, Siqun L.; Wang, Zhong; Thibodeau, Stephen N.; Cannon-Albright, Lisa A.; Teerlink, Craig C.; Camp, Nicola J.; Johnson, Anna M.; Zuhlke, Kimberly A.; Stanford, Janet L.; Ostrander, Elaine A.; Wiley, Kathleen E.; Isaacs, Sarah D.; Walsh, Patrick C.; Maier, Christiane; Luedeke, Manuel; Vogel, Walther; Schleutker, Johanna; Wahlfors, Tiina; Tammela, Teuvo; Schaid, Daniel; McDonnell, Shannon K.; Derycke, Melissa S.; Cancel-Tassin, Geraldine; Cussenot, Olivier; Wiklund, Fredrik; Grönberg, Henrik; Eeles, Ros; Easton, Doug; Kote-Jarai, Zsofia; Whittemore, Alice S.; Hsieh, Chih Lin; Giles, Graham G.; Hopper, John L.; Severi, Gianluca; Catalona, William J.; Mandal, Diptasri; Ledet, Elisa; Foulkes, William D.; Hamel, Nancy; Mahle, Lovise; Moller, Pal; Powell, Isaac; Bailey-Wilson, Joan E.; Carpten, John D.; Seminara, Daniela; Cooney, Kathleen A.; Isaacs, William B.

In: HUMAN GENETICS, Vol. 132, No. 1, 01.2013, p. 5-14.

Research output: Contribution to journalArticleScientificpeer-review

Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration. / Rauhala, Hanna E.; Teppo, Susanna; Niemelä, Sanna; Kallioniemi, Anne.

In: Anticancer Research, Vol. 33, No. 1, 01.2013, p. 45-52.

Research output: Contribution to journalArticleScientificpeer-review

2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture. / Ikonen, Liisa; Kerkelä, Erja; Metselaar, Gerald; Stuart, Marc C A; De Jong, Menno R.; Aalto-Setälä, Katriina.

In: BioMed Research International, Vol. 2013, 285678, 2013.

Research output: Contribution to journalArticleScientificpeer-review

B-cell lymphoma gene regulatory networks : Biological consistency among inference methods. / Simoes, Ricardo de Matos; Dehmer, Matthias; Emmert-Streib, Frank.

In: Frontiers in Genetics, Vol. 4, No. DEC, 00281, 2013.

Research output: Contribution to journalArticleScientificpeer-review

CIP2A expression and prognostic role in patients with esophageal adenocarcinoma. / Rantanen, Tuomo; Kauttu, Tuuli; Åkerla, Jonne; Honkanen, Teemu; Krogerus, Leena; Salo, Jarmo; Paavonen, Timo; Oksala, Niku.

In: MEDICAL ONCOLOGY, Vol. 30, No. 3, 684, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines. / Toivonen, Sanna; Ojala, Marisa; Hyysalo, Anu; Ilmarinen, Tanja; Rajala, Kristiina; Pekkanen-Mattila, Mari; Äänismaa, Riikka; Lundin, Karolina; Palgi, Jaan; Weltner, Jere; Trokovic, Ras; Silvennoinen, Olli; Skottman, Heli; Narkilahti, Susanna; Aalto-Setälä, Katriina; Otonkoski, Timo.

In: Stem Cells Translational Medicine, Vol. 2, No. 2, 2013, p. 83-93.

Research output: Contribution to journalArticleScientificpeer-review

DBComposer : An R package for integrative analysis and management of gene expression microarray data. / Kong, Lingjia; Aho, Kaisa Leena; Granberg, Kirsi; Roos, Christophe; Autio, Reija.

2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. p. 92-93 6735944.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells. / Patrikoski, Mimmi; Juntunen, Miia; Boucher, Shayne; Campbell, Andrew; Vemuri, Mohan C.; Mannerström, Bettina; Miettinen, Susanna.

In: STEM CELL RESEARCH & THERAPY, Vol. 4, No. 2, 27, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro. / Kyllönen, Laura; Haimi, Suvi; Mannerström, Bettina; Huhtala, Heini; Rajala, Kristiina M.; Skottman, Heli; Sándor, George K.; Miettinen, Susanna.

In: STEM CELL RESEARCH & THERAPY, Vol. 4, No. 1, 17, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens. / Chen, Jing; Eshghi, Shadi Toghi; Bova, George Steven; Li, Qing Kay; Li, Xingde; Zhang, Hui.

In: CLINICAL PROTEOMICS, Vol. 10, No. 1, 18, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Genetic and QTL analyses of yield and a set of physiological traits in pepper. / Alimi, N. A.; Bink, M. C A M; Dieleman, J. A.; Nicolaï, M.; Wubs, M.; Heuvelink, E.; Magan, J.; Voorrips, R. E.; Jansen, J.; Rodrigues, P. C.; van der Heijden, G. W A M; Vercauteren, A.; Vuylsteke, M.; Song, Y.; Glasbey, C.; Barocsi, A.; Lefebvre, V.; Palloix, A.; van Eeuwijk, F. A.

In: EUPHYTICA, Vol. 190, No. 2, 2013, p. 181-201.

Research output: Contribution to journalArticleScientificpeer-review

Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. / Diban, Nazely; Haimi, Suvi; Bolhuis-Versteeg, Lydia; Teixeira, Sandra; Miettinen, Susanna; Poot, André; Grijpma, Dirk; Stamatialis, Dimitrios.

In: Acta Biomaterialia, Vol. 9, No. 5, 2013, p. 6450-6458.

Research output: Contribution to journalArticleScientificpeer-review

Influence of the experimental design of gene expression studies on the inference of gene regulatory networks : Environmental factors. / Emmert-Streib, Frank.

In: PeerJ, Vol. 2013, No. 1, e10, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone. / Ylilauri, Mikko; Mattila, Elina; Nurminen, Elisa M.; Käpylä, Jarmo; Niinivehmas, Sanna P.; Määttä, Juha A.; Pentikäinen, Ulla; Ivaska, Johanna; Pentikäinen, Olli T.

In: Biochimica et biophysica acta: proteins and proteomics, Vol. 1834, No. 10, 2013, p. 1988-1997.

Research output: Contribution to journalArticleScientificpeer-review

Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream. / Magarkar, Aniket; Stepniewski, Michal; Karakas, Esra; Rog, Tomasz; Yliperttula, Marjo; Urtti, Arto; Bunker, Alex.

Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2 2013. p. 576-578.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India. / Jayakrishnan, Radhakrishnan; Mathew, Aleyamma; Uutela, Antti; Auvinen, Anssi; Sebastian, Paul.

In: ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, Vol. 14, No. 5, 2013, p. 2891-2896.

Research output: Contribution to journalArticleScientificpeer-review

Optimal molecular profiling of tissue and tissue components : De fining the best processing and microdissection methods for biomedical applications. / Rodriguez-Canales, Jaime; Hanson, Jeffrey C.; Hipp, Jason D.; Balis, Ulysses J.; Tangrea, Michael A.; Emmert-Buck, Michael R.; Bova, G. Steven.

Pancreatic Cancer: Methods and Protocols. Vol. 980 HUMANA PRESS INC, 2013. p. 61-120 (Methods in Molecular Biology; Vol. 980).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

Personalized medicine : Has it started yet? A reconstruction of the early history. / Emmert-Streib, Frank.

In: Frontiers in Genetics, Vol. 3, No. JAN, Article 313, 2013.

Research output: Contribution to journalArticleScientificpeer-review

Person identification from actions based on Artificial Neural Networks. / Iosifidis, Alexandros; Tefas, Anastasios; Pitas, Ioannis.

IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 2013. p. 7-13.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Person identification from actions based on dynemes and discriminant learning. / Iosifidis, Alexandros; Tefas, Anastasios; Pitas, Ioannis.

2013 International Workshop on Biometrics and Forensics, IWBF 2013. 2013.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Roll-to-roll atomic layer deposition for flexible substrates. / Lahtinen, K.; Maydannik, P.; Kääriäinen, T.; Seppänen, T.; Cameron, D. C.; Johansson, P.; Kraft, M.; Kuusipalo, J.

TAPPI International Conference on Nanotechnology 2013. TAPPI Press, 2013. p. 726-739.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Smoking cessation intervention in Rural Kerala, India : Findings of a randomised controlled trial. / Jayakrishnan, Radhakrishnan; Uutela, Antti; Mathew, Aleyamma; Auvinen, Anssi; Mathew, Preethi Sara; Sebastian, Paul.

In: ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, Vol. 14, No. 11, 2013, p. 6797-6802.

Research output: Contribution to journalArticleScientificpeer-review

Undercut edges for robust capillary self-alignment in hybrid microassembly. / Liimatainen, Ville; Sariola, Veikko; Zhou, Quan.

8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. 2013. p. 1088-1091 6559911.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Wear resistance of nanoparticle coatings on paperboard. / Stepien, Milena; Chinga-Carrasco, Gary; Saarinen, Jarkko J.; Teisala, Hannu; Tuominen, Mikko; Aromaa, Mikko; Haapanen, Janne; Kuusipalo, Jurkka; Mäkelä, Jyrki M.; Toivakka, Martti.

TAPPI International Conference on Nanotechnology 2013. TAPPI Press, 2013. p. 821-829.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Standardization of Diagnostic Biomarker Concentrations in Urine : The Hematuria Caveat. / Reid, Cherith N.; Stevenson, Michael; Abogunrin, Funso; Ruddock, Mark W.; Emmert-Streib, Frank; Lamont, John V.; Williamson, Kate E.

In: PLoS ONE, Vol. 7, No. 12, e53354, 31.12.2012.

Research output: Contribution to journalArticleScientificpeer-review

Aerobic Fitness Does Not Modify the Effect of FTO Variation on Body Composition Traits. / Huuskonen, Antti; Lappalainen, Jani; Oksala, Niku; Santtila, Matti; Häkkinen, Keijo; Kyröläinen, Heikki; Atalay, Mustafa.

In: PLoS ONE, Vol. 7, No. 12, e51635, 17.12.2012.

Research output: Contribution to journalArticleScientificpeer-review

Cancer incidence among Nordic airline cabin crew. / Pukkala, Eero; Helminen, Mika; Haldorsen, Tor; Hammar, Niklas; Kojo, Katja; Linnersjö, Anette; Rafnsson, Vilhjálmur; Tulinius, Hrafn; Tveten, Ulf; Auvinen, Anssi.

In: International Journal of Cancer, Vol. 131, No. 12, 15.12.2012, p. 2886-2897.

Research output: Contribution to journalArticleScientificpeer-review

Harnessing the complexity of gene expression data from cancer : From single gene to structural pathway methods. / Emmert-Streib, Frank; Tripathi, Shailesh; Matos Simoes, Ricardo D.

In: Biology Direct, Vol. 7, 44, 10.12.2012.

Research output: Contribution to journalArticleScientificpeer-review

Gene set analysis for self-contained tests : Complex null and specific alternative hypotheses. / Rahmatallah, Y.; Emmert-Streib, F.; Glazko, G.

In: Bioinformatics, Vol. 28, No. 23, 12.2012, p. 3073-3080.

Research output: Contribution to journalArticleScientificpeer-review

Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide. / Lisitsyna, E. S.; Durandin, N. A.; Ivanov, A. A.; Streltsov, S. A.; Susova, O. Yu; Shtil, A. A.; Zhuze, A. L.; Kuzmin, V. A.

In: MOLECULAR BIOLOGY, Vol. 46, No. 6, 11.2012, p. 823-827.

Research output: Contribution to journalArticleScientificpeer-review

Culture Conditions Affect Cardiac Differentiation Potential of Human Pluripotent Stem Cells. / Ojala, Marisa; Rajala, Kristiina; Pekkanen-Mattila, Mari; Miettinen, Marinka; Huhtala, Heini; Aalto-Setälä, Katriina.

In: PLoS ONE, Vol. 7, No. 10, e48659, 31.10.2012.

Research output: Contribution to journalArticleScientificpeer-review

GFP's Mechanical Intermediate States. / Saeger, John; Hytönen, Vesa P.; Klotzsch, Enrico; Vogel, Viola.

In: PLoS ONE, Vol. 7, No. 10, e46962, 31.10.2012.

Research output: Contribution to journalArticleScientificpeer-review

Biophysics of lipid bilayers containing oxidatively modified phospholipids : Insights from fluorescence and EPR experiments and from MD simulations. / Jurkiewicz, Piotr; Olzyńska, Agnieszka; Cwiklik, Lukasz; Conte, Elena; Jungwirth, Pavel; Megli, Francesco M.; Hof, Martin.

In: Biochimica et Biophysica Acta: Biomembranes, Vol. 1818, No. 10, 10.2012, p. 2388-2402.

Research output: Contribution to journalReview ArticleScientificpeer-review

Number of screens for overdetection as an indicator of absolute risk of overdiagnosis in prostate cancer screening. / Wu, Grace Hui Min; Auvinen, Anssi; Määttänen, Liisa; Tammela, Teuvo L J; Stenman, Ulf Hãkan; Hakama, Matti; Yen, Amy Ming Fang; Chen, Hsiu Hsi.

In: International Journal of Cancer, Vol. 131, No. 6, 15.09.2012, p. 1367-1375.

Research output: Contribution to journalArticleScientificpeer-review

Sarcopenia during androgen-deprivation therapy for prostate cancer. / Smith, Matthew R.; Saad, Fred; Egerdie, Blair; Sieber, Paul R.; Tammela, Teuvo L J; Ke, Chunlei; Leder, Benjamin Z.; Goessl, Carsten.

In: Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 30, No. 26, 10.09.2012, p. 3271-3276.

Research output: Contribution to journalArticleScientificpeer-review

Loss of SUFU function in familial multiple meningioma. / Aavikko, Mervi; Li, Song Ping; Saarinen, Silva; Alhopuro, Pia; Kaasinen, Eevi; Morgunova, Ekaterina; Li, Yilong; Vesanen, Kari; Smith, Miriam J.; Evans, D. Gareth R; Pöyhönen, Minna; Kiuru, Anne; Auvinen, Anssi; Aaltonen, Lauri A.; Taipale, Jussi; Vahteristo, Pia.

In: AMERICAN JOURNAL OF HUMAN GENETICS, Vol. 91, No. 3, 07.09.2012, p. 520-526.

Research output: Contribution to journalArticleScientificpeer-review

Endocrine prevention and treatment of prostate cancer. / Tammela, Teuvo L J.

In: Molecular and Cellular Endocrinology, Vol. 360, No. 1-2, 05.09.2012, p. 59-67.

Research output: Contribution to journalReview ArticleScientificpeer-review

Cell Model of Catecholaminergic Polymorphic Ventricular Tachycardia Reveals Early and Delayed Afterdepolarizations. / Kujala, Kirsi; Paavola, Jere; Lahti, Anna; Larsson, Kim; Pekkanen-Mattila, Mari; Viitasalo, Matti; Lahtinen, Annukka M.; Toivonen, Lauri; Kontula, Kimmo; Swan, Heikki; Laine, Mika; Silvennoinen, Olli; Aalto-Setälä, Katriina.

In: PLoS ONE, Vol. 7, No. 9, e44660, 04.09.2012.

Research output: Contribution to journalArticleScientificpeer-review

Effectiveness of a 12-month exercise program on physical performance and quality of life of breast cancer survivors. / Saarto, Tiina; Penttinen, Heidi Marika; Sievänen, Harri; Kellokumpu-Lehtinen, Pirkko Liisa; Hakamies-Blomqvist, Liisa; Nikander, Riku; Huovinen, Riikka; Luoto, Riitta; Kautiainen, Hannu; Järvenpää, Salme; Idman, Irja; Utriainen, Meri; Vehmanen, Leena; Jääskeläinen, Anna Stina; Elme, Anneli; Ruohola, Johanna; Palva, Tiina; Vertio, Harri; Rautalahti, Matti; Fogelholm, Mikael; Blomqvist, Carl; Luoma, Minna Liisa.

In: Anticancer Research, Vol. 32, No. 9, 09.2012, p. 3875-3884.

Research output: Contribution to journalArticleScientificpeer-review

Effect of exercise on bone structural traits, physical performance and body composition in breast cancer patients - A 12-month RCT. / Nikander, R.; Sievänen, H.; Ojala, K.; Kellokumpu-Lehtinen, P. L.; Palva, T.; Blomqvist, C.; Luoto, R.; Saarto, T.

In: Journal of Musculoskeletal and Neuronal Interactions, Vol. 12, No. 3, 09.2012, p. 127-135.

Research output: Contribution to journalArticleScientificpeer-review

Photodynamic therapy in urology : What can we do now and where are we heading? / Bozzini, G.; Colin, P.; Betrouni, N.; Nevoux, P.; Ouzzane, A.; Puech, P.; Villers, A.; Mordon, S.

In: PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vol. 9, No. 3, 09.2012, p. 261-273.

Research output: Contribution to journalReview ArticleScientificpeer-review

Responder analysis of the effects of denosumab on bone mineral density in men receiving androgen deprivation therapy for prostate cancer. / Egerdie, R. B.; Saad, F.; Smith, M. R.; Tammela, T. L J; Heracek, J.; Sieber, P.; Ke, C.; Leder, B.; Dansey, R.; Goessl, C.

In: PROSTATE CANCER AND PROSTATIC DISEASES, Vol. 15, No. 3, 09.2012, p. 308-312.

Research output: Contribution to journalArticleScientificpeer-review

Toxicity in patients receiving adjuvant docetaxel hormonal treatment after radical radiotherapy for intermediate or high-risk prostate cancer : A preplanned safety report of the SPCG-13 trial. / Kellokumpu-Lehtinen, P. L.; Hjälm-Eriksson, M.; Thellenberg-Karlsson, C.; Åström, L.; Franzen, L.; Marttila, T.; Seke, M.; Taalikka, M.; Ginman, C.

In: PROSTATE CANCER AND PROSTATIC DISEASES, Vol. 15, No. 3, 09.2012, p. 303-307.

Research output: Contribution to journalArticleScientificpeer-review

Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer. / Liu, W.; Lindberg, J.; Sui, G.; Luo, J.; Egevad, L.; Li, T.; Xie, C.; Wan, M.; Kim, S. T.; Wang, Z.; Turner, A. R.; Zhang, Z.; Feng, J.; Yan, Y.; Sun, J.; Bova, G. S.; Ewing, C. M.; Yan, G.; Gielzak, M.; Cramer, S. D.; Vessella, R. L.; Zheng, S. L.; Grönberg, H.; Isaacs, W. B.; Xu, J.

In: Oncogene, Vol. 31, No. 35, 30.08.2012, p. 3939-3948.

Research output: Contribution to journalArticleScientificpeer-review

Cytokinesis failure due to derailed integrin traffic induces aneuploidy and oncogenic transformation in vitro and in vivo. / Högnäs, G.; Tuomi, S.; Veltel, S.; Mattila, E.; Murumägi, A.; Edgren, H.; Kallioniemi, O.; Ivaska, J.

In: Oncogene, Vol. 31, No. 31, 02.08.2012, p. 3597-3606.

Research output: Contribution to journalArticleScientificpeer-review

No additional benefit of adding ifosfamide to docetaxel in castration-resistant metastatic prostate cancer. / Hervonen, Petteri; Tulijoki, Tapio; Kellokumpu-Lehtinen, Pirkko.

In: Anticancer Research, Vol. 32, No. 8, 08.2012, p. 3305-3310.

Research output: Contribution to journalArticleScientificpeer-review

Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis. / Inouye, Michael; Ripatti, Samuli; Kettunen, Johannes; Lyytikäinen, Leo Pekka; Oksala, Niku; Laurila, Pirkka Pekka; Kangas, Antti J.; Soininen, Pasi; Savolainen, Markku J.; Viikari, Jorma; Kähönen, Mika; Perola, Markus; Salomaa, Veikko; Raitakari, Olli; Lehtimäki, Terho; Taskinen, Marja Riitta; Järvelin, Marjo Riitta; Ala-Korpela, Mika; Palotie, Aarno; de Bakker, Paul I W.

In: PLOS GENETICS, Vol. 8, No. 8, e1002907, 08.2012.

Research output: Contribution to journalArticleScientificpeer-review

Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis : Evidence from the International Consortium for Prostate Cancer Genetics (ICPCG). / Jin, Guangfu; Lu, Lingyi; Cooney, Kathleen A.; Ray, Anna M.; Zuhlke, Kimberly A.; Lange, Ethan M.; Cannon-Albright, Lisa A.; Camp, Nicola J.; Teerlink, Craig C.; Fitzgerald, Liesel M.; Stanford, Janet L.; Wiley, Kathleen E.; Isaacs, Sarah D.; Walsh, Patrick C.; Foulkes, William D.; Giles, Graham G.; Hopper, John L.; Severi, Gianluca; Eeles, Ros; Easton, Doug; Kote-Jarai, Zsofia; Guy, Michelle; Rinckleb, Antje; Maier, Christiane; Vogel, Walther; Cancel-Tassin, Geraldine; Egrot, Christophe; Cussenot, Olivier; Thibodeau, Stephen N.; McDonnell, Shannon K.; Schaid, Daniel J.; Wiklund, Fredrik; Grönberg, Henrik; Emanuelsson, Monica; Whittemore, Alice S.; Oakley-Girvan, Ingrid; Hsieh, Chih Lin; Wahlfors, Tiina; Tammela, Teuvo; Schleutker, Johanna; Catalona, William J.; Zheng, S. Lilly; Ostrander, Elaine A.; Isaacs, William B.; Xu, Jianfeng.

In: HUMAN GENETICS, Vol. 131, No. 7, 07.2012, p. 1095-1103.

Research output: Contribution to journalArticleScientificpeer-review

The importance of LDL and Cholesterol metabolism for prostate epithelial cell growth. / Murtola, Teemu J.; Syvälä, Heimo; Pennanen, Pasi; Bläuer, Merja; Solakivi, Tiina; Ylikomi, Timo; Tammela, Teuvo L J.

In: PLoS ONE, Vol. 7, No. 6, e39445, 27.06.2012.

Research output: Contribution to journalArticleScientificpeer-review

Molecular mechanisms of ion-specific effects on proteins. / Rembert, Kelvin B.; Paterová, Jana; Heyda, Jan; Hilty, Christian; Jungwirth, Pavel; Cremer, Paul S.

In: Journal of the American Chemical Society, Vol. 134, No. 24, 20.06.2012, p. 10039-10046.

Research output: Contribution to journalArticleScientificpeer-review

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families. / Bailey-Wilson, Joan E.; Childs, Erica J.; Cropp, Cheryl D.; Schaid, Daniel J.; Xu, Jianfeng; Camp, Nicola J.; Cannon-Albright, Lisa A.; Farnham, James M.; George, Asha; Powell, Isaac; Carpten, John D.; Giles, Graham G.; Hopper, John L.; Severi, Gianluca; English, Dallas R.; Foulkes, William D.; Mæhle, Lovise; Møller, Pål; Eeles, Rosalind; Easton, Douglas; Guy, Michelle; Edwards, Steve; Badzioch, Michael D.; Whittemore, Alice S.; Oakley-Girvan, Ingrid; Hsieh, Chih Lin; Dimitrov, Latchezar; Stanford, Janet L.; Karyadi, Danielle M.; Deutsch, Kerry; McIntosh, Laura; Ostrander, Elaine A.; Wiley, Kathleen E.; Isaacs, Sarah D.; Walsh, Patrick C.; Thibodeau, Stephen N.; McDonnell, Shannon K.; Hebbring, Scott; Lange, Ethan M.; Cooney, Kathleen A.; Tammela, Teuvo L J; Schleutker, Johanna; Maier, Christiane; Bochum, Sylvia; Hoegel, Josef; Grönberg, Henrik; Wiklund, Fredrik; Emanuelsson, Monica; Cancel-Tassin, Geraldine; Valeri, Antoine; Cussenot, Olivier; Isaacs, William B.

In: BMC MEDICAL GENETICS, Vol. 13, 46, 19.06.2012.

Research output: Contribution to journalArticleScientificpeer-review