Välimäki H, Hyvärinen T, Leivo J, Iftikhar H, Pekkanen-Mattila M, Rajan DK et al. Covalent immobilization of luminescent oxygen indicators reduces cytotoxicity. BIOMEDICAL MICRODEVICES. 2020 Jun 1;22(2). 41. https://doi.org/10.1007/s10544-020-00495-3

Kuittinen T, Rovio P, Luukkaala T, Laurila M, Grénman S, Kallioniemi A et al. Paclitaxel, carboplatin and 1,25-D3 inhibit proliferation of ovarian cancer cells in vitro. Anticancer Research. 2020 Jun 1;40(6):3129-3138. https://doi.org/10.2196/10.21873/anticanres.14294

Paci M, Passini E, Klimas A, Severi S, Hyttinen J, Rodriguez B et al. All-Optical Electrophysiology Refines Populations of In Silico Human iPSC-CMs for Drug Evaluation. Biophysical Journal. 2020 May 19;118(10):2596-2611. https://doi.org/10.1016/j.bpj.2020.03.018

Palma CSD, Kandavalli V, Bahrudeen MNM, Minoia M, Chauhan V, Dash S et al. Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 2020 May 1;1863(5). 194515. https://doi.org/10.1016/j.bbagrm.2020.194515

Vanharanta L, Peränen J, Pfisterer SG, Enkavi G, Vattulainen I, Ikonen E. High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants. Traffic. 2020 May 1;21(5):386-397. https://doi.org/10.1111/tra.12727

Puhakka IJA, Peltola MJ. Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis. PSYCHONEUROENDOCRINOLOGY. 2020 May 1;115. 104603. https://doi.org/10.1016/j.psyneuen.2020.104603

Unban K, Khanongnuch R, Kanpiengjai A, Shetty K, Khanongnuch C. Utilizing Gelatinized Starchy Waste from Rice Noodle Factory as Substrate for L(+)-Lactic Acid Production by Amylolytic Lactic Acid Bacterium Enterococcus faecium K-1. Applied Biochemistry and Biotechnology. 2020 May. https://doi.org/10.1007/s12010-020-03314-w

Palmroth A, Pitkänen S, Hannula M, Paakinaho K, Hyttinen J, Miettinen S et al. Evaluation of scaffold microstructure and comparison of cell seeding methods using micro-computed tomography-based tools. Journal of the Royal Society. Interface. 2020 Apr 1;17(165). 20200102. https://doi.org/10.1098/rsif.2020.0102

Liu N, Santala S, Stephanopoulos G. Mixed carbon substrates: a necessary nuisance or a missed opportunity? CURRENT OPINION IN BIOTECHNOLOGY. 2020 Apr 1;62:15-21. https://doi.org/10.1016/j.copbio.2019.07.003

Haavisto JM, Kokko ME, Lakaniemi AM, Sulonen MLK, Puhakka JA. The effect of start-up on energy recovery and compositional changes in brewery wastewater in bioelectrochemical systems. BIOELECTROCHEMISTRY. 2020 Apr 1;132. 107402. https://doi.org/10.1016/j.bioelechem.2019.107402

Adonias GL, Yastrebova A, Barros MT, Koucheryavy Y, Cleary F, Balasubramaniam S. Utilizing Neurons for Digital Logic Circuits: A Molecular Communications Analysis. IEEE Transactions on Nanobioscience. 2020 Apr 1;19(2):224-236. https://doi.org/10.1109/TNB.2020.2975942

Viljanen J, Kalmankoski K, Contreras V, Sarin JK, Sorvajärvi T, Kinnunen H et al. Sequential Collinear Photofragmentation and Atomic Absorption Spectroscopy for Online Laser Monitoring of Triatomic Metal Species. Sensors (Basel, Switzerland). 2020 Jan 18;20(2). 533. https://doi.org/10.3390/s20020533

Holmstedt S, Candeias NR. A concise synthesis of carbasugars isolated from Streptomyces lincolnensis. Tetrahedron. 2020. 131346. https://doi.org/10.1016/j.tet.2020.131346

Rebelo Calejo T, Vuorenpää H, Vuorimaa-Laukkanen E, Kallio P, Aalto-Setälä K, Miettinen S et al. Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films. Acta Biomaterialia. 2020;101:327-343. https://doi.org/10.1016/j.actbio.2019.11.002

Lolicato F, Juhola H, Zak A, Postila PA, Saukko A, Rissanen S et al. Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor. ACS Chemical Neuroscience. 2020;11(13):1914–1924. https://doi.org/10.1021/acschemneuro.9b00656

Huttunen MJ, Hristu R, Dumitru A, Floroiu I, Costache M, Stanciu SG. Multiphoton microscopy of the dermoepidermal junction and automated identification of dysplastic tissues with deep learning. Biomedical Optics Express. 2020;11(1):186-199. https://doi.org/10.1364/BOE.11.000186

Liekkinen J, Enkavi G, Javanainen M, Olmeda B, Pérez-Gil J, Vattulainen I. Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex. JOURNAL OF MOLECULAR BIOLOGY. 2020;432(10):3251-3268. https://doi.org/10.1016/j.jmb.2020.02.028

Novakovic D, Peltonen L, Isomäki A, Fraser-Miller SJ, Nielsen LH, Laaksonen T et al. Surface Stabilization and Dissolution Rate Improvement of Amorphous Compacts with Thin Polymer Coatings: Can We Have It All? Molecular Pharmaceutics. 2020;17(4):1248-1260. https://doi.org/10.1021/acs.molpharmaceut.9b01263

Legrand C, Saleppico R, Sticht J, Lolicato F, Müller HM, Wegehingel S et al. The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2. Communications biology. 2020;3(1). 141. https://doi.org/10.1038/s42003-020-0871-y

Gracia-Tabuenca J, Seppä V-P, Jauhiainen M, Paassilta M, Viik J, Karjalainen J. Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography. Respiratory Physiology and Neurobiology. 2020;271. 103312. https://doi.org/10.1016/j.resp.2019.103312

Nymark P, Bakker M, Dekkers S, Franken R, Fransman W, García-Bilbao A et al. Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices. Small. 2020;16(6). 1904749. https://doi.org/10.1002/smll.201904749

Losoi PS, Santala VP, Santala SM. Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding. ACS Synthetic Biology. 2019 Dec 20;8(12):2642-2650. https://doi.org/10.1021/acssynbio.9b00316

Intosalmi J, Scott AC, Hays M, Flann N, Yli-Harja O, Lähdesmäki H et al. Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies. BMC Molecular and Cell Biology. 2019 Dec 19;20(1). 59. https://doi.org/10.1186/s12860-019-0234-z

Emmert-Streib F, Dehmer M, Yli-Harja O. Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology: A Cooperative Service Model. Frontiers in cell and developmental biology. 2019 Dec 17;7. 349. https://doi.org/10.3389/fcell.2019.00349

Ometov A, Bezzateev S, Voloshina N, Masek P, Komarov M. Environmental monitoring with distributed mesh networks: An overview and practical implementation perspective for urban scenario. Sensors (Switzerland). 2019 Dec 2;19(24). 5548. https://doi.org/10.3390/s19245548

Lowe SJ, Partridge DG, Davies JF, Wilson KR, Topping D, Riipinen I. Key drivers of cloud response to surface-active organics. Nature Communications. 2019 Dec 1;10(1). 5214. https://doi.org/10.1038/s41467-019-12982-0

Zhang H, Zeng H, Priimägi A, Ikkala O. Programmable responsive hydrogels inspired by classical conditioning algorithm. Nature Communications. 2019 Dec 1;10(1). 3267. https://doi.org/10.1038/s41467-019-11260-3

Roldin P, Ehn M, Kurtén T, Olenius T, Rissanen MP, Sarnela N et al. The role of highly oxygenated organic molecules in the Boreal aerosol-cloud-climate system. Nature Communications. 2019 Dec 1;10(1). 4370. https://doi.org/10.1038/s41467-019-12338-8

Häkkinen A, Oliveira SMD, Neeli-Venkata R, Ribeiro AS. Transcription closed and open complex formation coordinate expression of genes with a shared promoter region. Journal of the Royal Society Interface. 2019 Dec 1;16(161). 20190507. https://doi.org/10.1098/rsif.2019.0507

Shevkunov I, Katkovnik V, Claus D, Pedrini G, Petrov NV, Egiazarian K. Spectral object recognition in hyperspectral holography with complex-domain denoising. Sensors (Switzerland). 2019 Nov 26;19(23). 5188. https://doi.org/10.3390/s19235188

Eerola SK, Santio NM, Rinne S, Kouvonen P, Corthals GL, Scaravilli M et al. Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion. CELL COMMUNICATION AND SIGNALING. 2019 Nov 15;17(1). 148. https://doi.org/10.1186/s12964-019-0463-y

Tomkowski R, Sorsa A, Santa-Aho S, Lundin P, Vippola M. Statistical evaluation of barkhausen noise testing (BNT) for ground samples. Sensors (Switzerland). 2019 Nov 1;19(21). 4716. https://doi.org/10.3390/s19214716

Bahrudeen MNM, Chauhan V, Palma CSD, Oliveira SMD, Kandavalli VK, Ribeiro AS. Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry. Journal of Microbiological Methods. 2019 Oct 22;166. 105745. https://doi.org/10.1016/j.mimet.2019.105745

Inha LM, Katko TS, Rajala RP. Improved water services cooperation through clarification of rules and roles. Water (Switzerland). 2019 Oct 19;11(10). 2172. https://doi.org/10.3390/w11102172

Hajdu-Rahkama R, Ahoranta S, Lakaniemi A-M, Puhakka JA. Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms. Biochemical Engineering Journal. 2019 Oct 15;150. 107286. https://doi.org/10.1016/j.bej.2019.107286

Saegusa T, Sakai H, Nagashima H, Kobori Y, Tkachenko NV, Hasobe T. Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission. Journal of the American Chemical Society. 2019 Sep 18;141(37):14720-14727. https://doi.org/10.1021/jacs.9b06567

Auvinen V-V, Merivaara A, Kiiskinen J, Paukkonen H, Laurén P, Hakkarainen T et al. Effects of nanofibrillated cellulose hydrogels on adipose tissue extract and hepatocellular carcinoma cell spheroids in freeze-drying. Cryobiology. 2019 Sep 15. https://doi.org/10.1016/j.cryobiol.2019.09.005

Li S, Prasanna X, Salo VT, Vattulainen I, Ikonen E. An efficient auxin-inducible degron system with low basal degradation in human cells. Nature Methods. 2019 Sep 1;16(9):866-869. https://doi.org/10.1038/s41592-019-0512-x

Poojari C, Wilkosz N, Lira RB, Dimova R, Jurkiewicz P, Petka R et al. Behavior of the DPH fluorescence probe in membranes perturbed by drugs. Chemistry and Physics of Lipids. 2019 Sep 1;223. 104784. https://doi.org/10.1016/j.chemphyslip.2019.104784

Kreutzer J, Viehrig M, Pölönen RP, Zhao F, Ojala M, Aalto-Setälä K et al. Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes. BIOMECHANICS AND MODELING IN MECHANOBIOLOGY. 2019 Aug 23. https://doi.org/10.1007/s10237-019-01211-8

Wang S, Nawale GN, Oommen OP, Hilborn J, Varghese OP. Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels. Polymer Chemistry. 2019 Aug 21;10(31):4322-4327. https://doi.org/10.1039/c9py00862d

Johansson JK, Karema-Jokinen VI, Hakanen S, Jylhä A, Uusitalo H, Vihinen-Ranta M et al. Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium. BMC BIOLOGY. 2019 Aug 15;17(1). 63. https://doi.org/10.1186/s12915-019-0681-1

Pitkänen S, Paakinaho K, Pihlman H, Ahola N, Hannula M, Asikainen S et al. Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications. European cells & materials. 2019 Aug 5;38:35-50. https://doi.org/10.22203/eCM.v038a04

Salmela M, Lehtinen T, Efimova E, Santala S, Santala V. Alkane and wax ester production from lignin-related aromatic compounds. Biotechnology and Bioengineering. 2019 Aug 1;116(8):1934-1945. https://doi.org/10.1002/bit.27005

Smolander J, Dehmer M, Emmert-Streib F. Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders. FEBS Open Bio. 2019 Jul 1;9(7):1232-1248. https://doi.org/10.1002/2211-5463.12652

Jackson T, Shenkin A, Moore J, Bunce A, van Emmerik T, Kane B et al. An architectural understanding of natural sway frequencies in trees. Journal of the Royal Society. Interface. 2019 Jun 28;16(155). https://doi.org/10.1098/rsif.2019.0116

Kadekar S, Nawale GN, Karlsson K, Ålander C, Oommen OP, Varghese OP. Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection. Molecular Therapy - Nucleic Acids. 2019 Jun 7;16:597-604. https://doi.org/10.1016/j.omtn.2019.04.012

Lolicato F, Joly L, Martinez-Seara H, Fragneto G, Scoppola E, Baldelli Bombelli F et al. The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers. Small. 2019 Jun 7;15(23). 1805046. https://doi.org/10.1002/smll.201805046

Ali I, Suominen O, Gotchev A, Morales ER. Methods for simultaneous robot-world-hand–eye calibration: A comparative study. Sensors (Switzerland). 2019 Jun 2;19(12). 2837. https://doi.org/10.3390/s19122837

Borges LR, Barufaldi B, Caron RF, Bakic PR, Foi A, Maidment ADA et al. Technical Note: Noise models for virtual clinical trials of digital breast tomosynthesis. Medical Physics. 2019 Jun 1;46(6):2683-2689. https://doi.org/10.1002/mp.13534

Habib M, Serebryannikov AE, Caglayan H, Vandenbosch GAE, Ozbay E. Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons. Plasmonics. 2019 Jun;14(3):721-729. https://doi.org/10.1007/s11468-018-0850-z

Kekonen A, Bergelin M, Johansson M, Kumar Joon N, Bobacka J, Viik J. Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current. Sensors. 2019 May 31;19(11). https://doi.org/10.3390/s19112505

Manna M, Nieminen T, Vattulainen I. Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes. ANNUAL REVIEW OF BIOPHYSICS. 2019 May 6;48:421-439. https://doi.org/10.1146/annurev-biophys-052118-115553

Javanainen M, Enkavi G, Guixà-Gonzaléz R, Kulig W, Martinez-Seara H, Levental I et al. Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions. PLoS Computational Biology. 2019 May 1;15(5). e1007033. https://doi.org/10.1371/journal.pcbi.1007033

Peltokangas M, Suominen V, Vakhitov D, Korhonen J, Verho J, Mattila VM et al. Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times. IEEE Journal of Biomedical and Health Informatics. 2019 May;23(3):1058-1065. https://doi.org/10.1109/JBHI.2018.2851388

Kerst T, Malmbeck R, lal Banik NL, Toivonen J. Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution. Sensors (Switzerland). 2019 Apr 1;19(7). 1602. https://doi.org/10.3390/s19071602

Ometov A, Bezzateev S, Davydov V, Shchesniak A, Masek P, Lohan ES et al. Positioning information privacy in intelligent transportation systems: An overview and future perspective. Sensors. 2019 Apr 1;19(7). 1603. https://doi.org/10.3390/s19071603

Gupta A, Harrison PJ, Wieslander H, Pielawski N, Kartasalo K, Partel G et al. Deep Learning in Image Cytometry: A Review. Cytometry Part A. 2019 Apr;95(4):366-380. https://doi.org/10.1002/cyto.a.23701

Luo J, Lehtinen T, Efimova E, Santala V, Santala S. Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules. Microbial Cell Factories. 2019 Mar 11;18(1). 48. https://doi.org/10.1186/s12934-019-1097-x

Rissanen AJ, Peura S, Mpamah PA, Taipale S, Tiirola M, Biasi C et al. Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake. FEMS Microbiology Letters. 2019 Mar 1;366(5). https://doi.org/10.1093/femsle/fnz044

Kangas P, Tikkakoski A, Uitto M, Viik J, Bouquin H, Niemelä O et al. Metabolic syndrome is associated with decreased heart rate variability in a sex-dependent manner: a comparison between 252 men and 249 women. Clinical Physiology and Functional Imaging. 2019 Mar;39(2):160-167. https://doi.org/10.1111/cpf.12551

Liimatainen K, Kananen L, Latonen L, Ruusuvuori P. Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. BMC Bioinformatics. 2019 Feb 15;20(1). 80. https://doi.org/10.1186/s12859-019-2605-z

Startceva S, Kandavalli VK, Visa A, Ribeiro AS. Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 2019 Feb 1;1862(2):119-128. https://doi.org/10.1016/j.bbagrm.2018.12.005

Nissinen SI, Roine A, Hokkinen L, Karjalainen M, Venäläinen M, Helminen H et al. Detection of Pancreatic Cancer by Urine Volatile Organic Compound Analysis. Anticancer Research. 2019 Jan;39(1):73-79. https://doi.org/10.21873/anticanres.13081

Ylä-Outinen L, Tanskanen JMA, Kapucu FE, Hyysalo A, Hyttinen JAK, Narkilahti S. Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis. In In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC. 2019. p. 299-329. (Advances in Neurobiology). https://doi.org/10.1007/978-3-030-11135-9_13

Massera J. Bioactive glass-ceramics: From macro to nano. In Nanostructured Biomaterials for Regenerative Medicine. Woodhead Publishing. 2019. p. 275-292 https://doi.org/10.1016/B978-0-08-102594-9.00010-3

Prondzynski M, Lemoine MD, Zech ATL, Horváth A, Di Mauro V, Koivumäki JT et al. Disease modeling of a mutation in α-actinin 2 guides clinical therapy in hypertrophic cardiomyopathy. EMBO Molecular Medicine. 2019. e11115. https://doi.org/10.15252/emmm.201911115

Niinimäki S, Narra N, Härkönen L, Abe S, Nikander R, Hyttinen J et al. Do bone geometric properties of the proximal femoral diaphysis reflect loading history, muscle properties, or body dimensions? American Journal of Human Biology. 2019. e23246. https://doi.org/10.1002/ajhb.23246

Musa A, Tripathi S, Dehmer M, Emmert-Streib F. L1000 viewer: A search engine and Web interface for the LINCS data repository. Frontiers in Genetics. 2019;10(JUN). 557. https://doi.org/10.3389/fgene.2019.00557

Halonen HT, Hyttinen JAK, Ihalainen TO. Mechanical impact stimulation platform tailored for high-resolution light microscopy. HEALTH AND TECHNOLOGY. 2019. https://doi.org/10.1007/s12553-019-00382-9

Tienaho J, Karonen M, Muilu–Mäkelä R, Wähälä K, Denegri EL, Franzén R et al. Metabolic profiling of water-soluble compounds from the extracts of dark septate endophytic fungi (DSE) isolated from scots pine (Pinus sylvestris L.) seedlings using UPLC–orbitrap–MS. Molecules. 2019;24(12). 2330. https://doi.org/10.3390/molecules24122330

Trevlakis SE, Boulogeorgos AAA, Sofotasios PC, Muhaidat S, Karagiannidis GK. Optical wireless cochlear implants. Biomedical Optics Express. 2019;10(2):707-730. https://doi.org/10.1364/BOE.10.000707

Guglielmetti S, Santala V, Mangayil R, Ciranna A, Karp MT. O2-requiring molecular reporters of gene expression for anaerobic microorganisms. Biosensors and Bioelectronics. 2019;123:1-6. https://doi.org/10.1016/j.bios.2018.09.066

Moore D, Simoes RDM, Dehmer M, Emmert-Streib F. Prostate cancer gene regulatory network inferred from RNA-seq data. CURRENT GENOMICS. 2019;20(1):38-48. https://doi.org/10.2174/1389202919666181107122005

Glazko G, Zybailov B, Emmert-Streib F, Baranova A, Rahmatallah Y. Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study. PLoS ONE. 2019;14(8). e0221444. https://doi.org/10.1371/journal.pone.0221444

Martins DP, Barros MT, Balasubramaniam S. Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits. IEEE Transactions on Nanobioscience. 2019. https://doi.org/10.1109/TNB.2019.2930960

Nurmi A, Muranen TA, Pelttari LM, Kiiski JI, Heikkinen T, Lehto S et al. Recurrent moderate-risk mutations in Finnish breast and ovarian cancer patients. International Journal of Cancer. 2019. https://doi.org/10.1002/ijc.32309

Baino F, Barberi J, Fiume E, Orlygsson G, Massera J, Verné E. Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds. Journal of Healthcare Engineering. 2019;2019. 5153136. https://doi.org/10.1155/2019/5153136

Assoah B, Riihonen V, Vale JR, Valkonen A, Candeias NR. Synthesis of 6,12-disubstituted methanodibenzo[b,f ][1,5]dioxocins: Pyrrolidine catalyzed self-condensation of 2′-Hydroxyacetophenones. Molecules. 2019;24(13). 2405. https://doi.org/10.3390/molecules24132405

Martins L, Neeli-Venkata R, Oliveira SMD, Häkkinen A, Ribeiro AS, Fonseca JM. SCIP: a single-cell image processor toolbox. Bioinformatics. 2018 Dec 15;34(24):4318-4320. https://doi.org/10.1093/bioinformatics/bty505

Perumbilavil S, Piccardi A, Barboza R, Buchnev O, Kauranen M, Strangi G et al. Beaming random lasers with soliton control. Nature Communications. 2018 Dec 1;9(1). 3863. https://doi.org/10.1038/s41467-018-06170-9

Santala S, Efimova E, Santala V. Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch. Metabolic Engineering Communications. 2018 Dec 1;7. e00078. https://doi.org/10.1016/j.mec.2018.e00078

Salmenjoki H, Alava MJ, Laurson L. Machine learning plastic deformation of crystals. Nature Communications. 2018 Dec 1;9(1). 5307. https://doi.org/10.1038/s41467-018-07737-2

Pecha S, Koivumäki J, Geelhoed B, Kempe R, Berk E, Engel A et al. Normalization of force to muscle cross-sectional area: A helpful attempt to reduce data scattering in contractility studies? Acta Physiologica. 2018 Dec 1;224(4). e13202. https://doi.org/10.1111/apha.13202

Kotila T, Kogan K, Enkavi G, Guo S, Vattulainen I, Goode BL et al. Structural basis of actin monomer re-charging by cyclase-Associated protein. Nature Communications. 2018 Dec 1;9(1). 1892. https://doi.org/10.1038/s41467-018-04231-7

Ferreira SA, Motwani MS, Faull PA, Seymour AJ, Yu TTL, Enayati M et al. Bi-directional cell-pericellular matrix interactions direct stem cell fate. Nature Communications. 2018 Dec;9(1). 4049. https://doi.org/10.1038/s41467-018-06183-4

Gasik M, Zühlke A, Haaparanta A-M, Muhonen V, Laine K, Bilotsky Y et al. The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration. Frontiers in Bioengineering and Biotechnology. 2018 Nov 30;6(NOV). 187. https://doi.org/10.3389/fbioe.2018.00187

Närhi M, Salmela L, Toivonen J, Billet C, Dudley JM, Genty G. Machine learning analysis of extreme events in optical fibre modulation instability. Nature Communications. 2018 Nov 22;9(1). https://doi.org/10.1038/s41467-018-07355-y

Rinne J, Keskinen J, Berger PR, Lupo D, Valkama M. M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components. Sensors (Basel, Switzerland). 2018 Nov 16;18(11). https://doi.org/10.3390/s18113992

Chevrier DM, Raich L, Rovira C, Das A, Luo Z, Yao Q et al. Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters. Journal of the American Chemical Society. 2018 Nov 14;140(45):15430-15436. https://doi.org/10.1021/jacs.8b09440

Novakovic D, Isomäki A, Pleunis B, Fraser-Miller SJ, Peltonen L, Laaksonen T et al. Understanding Dissolution and Crystallization with Imaging: A Surface Point of View. Molecular Pharmaceutics. 2018 Nov 5;15(11):5361-5373. https://doi.org/10.1021/acs.molpharmaceut.8b00840

Shevkunov I, Katkovnik V, Petrov NV, Egiazarian K. Super-resolution microscopy for biological specimens: Lensless phase retrieval in noisy conditions. Biomedical Optics Express. 2018 Nov 1;9(11):5511-5523. #340805. https://doi.org/10.1364/BOE.9.005511

Mobarak E, Javanainen M, Kulig W, Honigmann A, Sezgin E, Aho N et al. How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative. Biochimica et Biophysica Acta - Biomembranes. 2018 Nov;1860(11):2436-2445. https://doi.org/10.1016/j.bbamem.2018.07.003

Calderón-Garcidueñas L, González-Maciel A, Reynoso-Robles R, Kulesza RJ, Mukherjee PS, Torres-Jardón R et al. Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology. Environmental Research. 2018 Oct 1;166:348-362. https://doi.org/10.1016/j.envres.2018.06.027

Pihlman H, Keränen P, Paakinaho K, Linden J, Hannula M, Manninen IK et al. Novel osteoconductive β-tricalcium phosphate/poly(L-lactide-co-e-caprolactone) scaffold for bone regeneration: a study in a rabbit calvarial defect. Journal of Materials Science: Materials in Medicine. 2018 Oct 1;29(10). 156. https://doi.org/10.1007/s10856-018-6159-9

Martins DP, Leetanasaksakul K, Barros MT, Thamchaipenet A, Donnelly W, Balasubramaniam S. Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression. IEEE Transactions on Nanobioscience. 2018 Oct;17(4):533-542. https://doi.org/10.1109/TNB.2018.2871276

Lau A, Bentley LP, Martius C, Shenkin A, Bartholomeus H, Raumonen P et al. Quantifying branch architecture of tropical trees using terrestrial LiDAR and 3D modelling. Trees - Structure and Function. 2018 Oct;32(5):1219-1231. https://doi.org/10.1007/s00468-018-1704-1

Dessì P, Porca E, Lakaniemi A-M, Collins G, Lens PNL. Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater. Biochemical Engineering Journal. 2018 Sep 15;137:214-221. https://doi.org/10.1016/j.bej.2018.05.027

Pantsar T, Rissanen S, Dauch D, Laitinen T, Vattulainen I, Poso A. Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling. PLoS Computational Biology. 2018 Sep 10;14(9). e1006458. https://doi.org/10.1371/journal.pcbi.1006458

Vagos MRSS, van Herck IGM, Sundnes J, Arevalo HJ, Edwards AG, Koivumäki JT. Computational modeling of electrophysiology and pharmacotherapy of atrial fibrillation: Recent advances and future challenges. Frontiers in Physiology. 2018 Sep 4;9(SEP). 1221. https://doi.org/10.3389/fphys.2018.01221

Kartasalo K, Latonen L, Vihinen J, Visakorpi T, Nykter M, Ruusuvuori P. Comparative analysis of tissue reconstruction algorithms for 3D histology. Bioinformatics. 2018 Sep 1;34(17):3013-3021. https://doi.org/10.1093/bioinformatics/bty210

Milagro J, Gil E, Lazaro J, Seppae VP, Malmberg LP, Pelkonen AS et al. Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms. IEEE Journal of Biomedical and Health Informatics. 2018 Sep;22(5):1332-1340. https://doi.org/10.1109/JBHI.2017.2775059

Owen MC, Kulig W, Poojari C, Rog T, Strodel B. Physiologically-relevant levels of sphingomyelin, but not GM1, induces a β-sheet-rich structure in the amyloid-β(1-42) monomer. Biochimica et Biophysica Acta - Biomembranes. 2018 Sep;1860(9):1709-1720. https://doi.org/10.1016/j.bbamem.2018.03.026

Kallonen A, Nieminen H, Das S, Sallinen R. Comparison of food frequency questionnaire data and shopping records for the assessment of food intake. In Proceedings of Seventh International Conference on Well-Being in the Information Society: Fighting Inequalities (WIS 2018). 2018. p. 25-30. (TUCS Lecture Notes).

Lehtinen T, Virtanen H, Santala S, Santala V. Production of alkanes from CO2 by engineered bacteria. Biotechnology for Biofuels. 2018 Aug 21;11. 228. https://doi.org/10.1186/s13068-018-1229-2

Ojansivu M, Mishra A, Vanhatupa S, Juntunen M, Larionova A, Massera J et al. The effect of S53P4-based borosilicate glasses and glass dissolution products on the osteogenic commitment of human adipose stem cells. PLoS ONE. 2018 Aug 1;13(8). e0202740. https://doi.org/10.1371/journal.pone.0202740

Tan LC, Espinosa-Ortiz EJ, Nancharaiah YV, van Hullebusch ED, Gerlach R, Lens PN. Selenate removal in biofilm systems: Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community. Journal of Chemical Technology and Biotechnology. 2018 Aug;93(8):2380-2389. https://doi.org/10.1002/jctb.5586

Salmela M, Lehtinen T, Efimova E, Santala S, Mangayil R. Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation. Biotechnology for Biofuels. 2018 Jul 3;11(1). 187. https://doi.org/10.1186/s13068-018-1186-9

Laurén P, Paukkonen H, Lipiäinen T, Dong Y, Oksanen T, Räikkönen H et al. Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films. Pharmaceutical Research. 2018 Jul 1;35(7). 145. https://doi.org/10.1007/s11095-018-2428-z

Raumonen P, Tarvainen T. Segmentation of vessel structures from photoacoustic images with reliability assessment. Biomedical Optics Express. 2018 Jul 1;9(7):2887-2904. https://doi.org/10.1364/BOE.9.002887

Paci M, Pölönen R-P, Cori D, Penttinen K, Aalto-Setälä K, Severi S et al. Automatic optimization of an in silico model of human iPSC derived cardiomyocytes recapitulating calcium handling abnormalities. Frontiers in Physiology. 2018 Jun 26;9(JUN). 709. https://doi.org/10.3389/fphys.2018.00709

Harju J, Tarniceriu A, Parak J, Vehkaoja A, Yli-Hankala A, Korhonen I. Monitoring of heart rate and inter-beat intervals with wrist plethysmography in patients with atrial fibrillation. Physiological Measurement. 2018 Jun 26;39(6). 065007. https://doi.org/10.1088/1361-6579/aac9a9

Laulumaa S, Nieminen T, Raasakka A, Krokengen OC, Safaryan A, Hallin EI et al. Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins. BMC Structural Biology. 2018 Jun 25;18(1). 8. https://doi.org/10.1186/s12900-018-0087-2

Siljander S, Keinänen P, Räty A, Ramakrishnan KR, Tuukkanen S, Kunnari V et al. Effect of surfactant type and sonication energy on the electrical conductivity properties of nanocellulose-CNT nanocomposite films. International Journal of Molecular Sciences. 2018 Jun 20;19(6). 1819. https://doi.org/10.3390/ijms19061819

Pirhonen M, Peltokangas M, Vehkaoja A. Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra. Sensors. 2018 Jun 1;18(6). 1693. https://doi.org/10.3390/s18061693

Venäläinen MK, Roine AN, Häkkinen MR, Vepsäläinen JJ, Kumpulainen PS, Kiviniemi MS et al. Altered polyamine profiles in colorectal cancer. Anticancer Research. 2018 Jun 1;38(6):3601-3607. https://doi.org/10.21873/anticanres.12634

Gavas RD, Roy S, Chatterjee D, Tripathy SR, Chakravarty K, Sinha A. Enhancing the usability of low-cost eye trackers for rehabilitation applications. PLoS ONE. 2018 Jun 1;13(6). e0196348. https://doi.org/10.1371/journal.pone.0196348

Virtanen J, Somppi S, Törnqvist H, Jeyhani V, Fiedler P, Gizatdinova Y et al. Evaluation of dry electrodes in canine heart rate monitoring. Sensors. 2018 Jun 1;18(6). 1757. https://doi.org/10.3390/s18061757

George L, Hiltunen A, Santala V, Efimov A. Photo-antimicrobial efficacy of zinc complexes of porphyrin and phthalocyanine activated by inexpensive consumer LED lamp. Journal of Inorganic Biochemistry. 2018 Jun 1;183:94-100. https://doi.org/10.1016/j.jinorgbio.2018.03.015

Owen MC, Kulig W, Rog T, Vattulainen I, Strodel B. Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study. Journal of Membrane Biology. 2018 Jun;251(3):521-534. https://doi.org/10.1007/s00232-018-0028-9

Neeli-Venkata R, Oliveira SMD, Martins L, Startceva S, Bahrudeen M, Fonseca JM et al. The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures. Physical Biology. 2018 May 18;15(5). 056002. https://doi.org/10.1088/1478-3975/aac1cb

Rautaniemi K, Vuorimaa-Laukkanen E, Strachan CJ, Laaksonen T. Crystallization Kinetics of an Amorphous Pharmaceutical Compound Using Fluorescence-Lifetime-Imaging Microscopy. Molecular Pharmaceutics. 2018 May 7;15(5):1964-1971. https://doi.org/10.1021/acs.molpharmaceut.8b00117

Sutka A, Timusk M, Joost U, Ignatans R, Maiorov M. Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires. e-Journal of Surface Science and Nanotechnology. 2018 May 2;16:119-121. https://doi.org/10.1380/ejssnt.2018.119

Musa A, Ghoraie LS, Zhang SD, Glazko G, Yli-Harja O, Dehmer M et al. A review of connectivity map and computational approaches in pharmacogenomics. Briefings in Bioinformatics. 2018 May 1;19(3):506-523. https://doi.org/10.1093/bib/bbw112

Åkerblom M, Raumonen P, Casella E, Disney MI, Danson FM, Gaulton R et al. Non-intersecting leaf insertion algorithm for tree structure models. Interface Focus. 2018 Apr 6;8(2). 20170045. https://doi.org/10.1098/rsfs.2017.0045

Kaasalainen S, Åkerblom M, Nevalainen O, Hakala T, Kaasalainen M. Uncertainty in multispectral lidar signals caused by incidence angle effects. Interface Focus. 2018 Apr 6;8(2). 20170033. https://doi.org/10.1098/rsfs.2017.0033

Disney MI, Boni Vicari M, Burt A, Calders K, Lewis SL, Raumonen P et al. Weighing trees with lasers: Advances, challenges and opportunities. Interface Focus. 2018 Apr 6;8(2). 20170048. https://doi.org/10.1098/rsfs.2017.0048

Gao Q, Liang WW, Foltz SM, Mutharasu G, Jayasinghe RG, Cao S et al. Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Cell Reports. 2018 Apr 3;23(1):227-238.e3. https://doi.org/10.1016/j.celrep.2018.03.050

Karjalainen M, Kontunen A, Saari S, Rönkkö T, Lekkala J, Roine A et al. The characterization of surgical smoke from various tissues and its implications for occupational safety. PLoS ONE. 2018 Apr 1;13(4). e0195274. https://doi.org/10.1371/journal.pone.0195274

Vuorinen EM, Rajala NK, Ihalainen TO, Kallioniemi A. Depletion of nuclear import protein karyopherin alpha 7 (KPNA7) induces mitotic defects and deformation of nuclei in cancer cells. BMC Cancer. 2018 Mar 27;18(1). 325. https://doi.org/10.1186/s12885-018-4261-5

Kuismanen K, Juntunen M, Narra Girish N, Tuominen H, Huhtala H, Nieminen K et al. Functional Outcome of Human Adipose Stem Cell Injections in Rat Anal Sphincter Acute Injury Model. Stem Cells Translational Medicine. 2018 Mar 1;7(3):295-304. https://doi.org/10.1002/sctm.17-0208

Karvinen J, Joki T, Ylä-Outinen L, Koivisto JT, Narkilahti S, Kellomäki M. Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells. Reactive and Functional Polymers. 2018 Mar 1;124:29-39. https://doi.org/10.1016/j.reactfunctpolym.2017.12.019

Mehrang S, Pietilä J, Korhonen I. An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band. Sensors. 2018 Feb 22;18(2). 613. https://doi.org/10.3390/s18020613

Gumulya Y, Boxall NJ, Khaleque HN, Santala V, Carlson RP, Kaksonen AH. In a quest for engineering acidophiles for biomining applications: Challenges and opportunities. Genes. 2018 Feb 21;9(2). 116. https://doi.org/10.3390/genes9020116

Lehtinen T, Efimova E, Santala S, Santala V. Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases. Microbial Cell Factories. 2018 Feb 8;17(1). 19. https://doi.org/10.1186/s12934-018-0869-z

Hakala M, Kalimeri M, Enkavi G, Vattulainen I, Lappalainen P. Molecular mechanism for inhibition of twinfilin by phosphoinositides. Journal of Biological Chemistry. 2018 Jan 1;293(13):4818-4829. https://doi.org/10.1074/jbc.RA117.000484

Tienaho J, Poikulainen E, Sarjala T, Muilu-Mäkelä R, Santala V, Karp M. A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. Photochemistry and Photobiology. 2018;94(6):1273-1280. https://doi.org/10.1111/php.12954

Rinta-Kanto JM, Pehkonen K, Sinkko H, Tamminen MV, Timonen S. Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms. Canadian Journal of Microbiology. 2018;64(10):716-726. https://doi.org/10.1139/cjm-2018-0035

Ojansivu M, Wang X, Hyväri L, Kellomäki M, Hupa L, Vanhatupa S et al. Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases. European Cells and Materials. 2018;35:53-71. https://doi.org/10.22203/eCM.v035a05

Medan V, Mäki-Marttunen T, Sztarker J, Preuss T. Differential processing in modality-specific Mauthner cell dendrites. Journal of Physiology. 2018;596(4):667-689. https://doi.org/10.1113/JP274861

Khanongnuch R, Di Capua F, Lakaniemi A-M, Rene ER, Lens PNL. Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor: Experimental and artificial neural network model analysis. Process Biochemistry. 2018;68:171-181. https://doi.org/10.1016/j.procbio.2018.02.018

Rokade SS, Joshi KA, Mahajan K, Patil S, Tomar G, Dubal DS et al. Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer. Bioinorganic Chemistry and Applications. 2018;2018. 4924186. https://doi.org/10.1155/2018/4924186

Ojansivu M, Johansson L, Vanhatupa S, Tamminen I, Hannula M, Hyttinen J et al. Knitted 3D Scaffolds of Polybutylene Succinate Support Human Mesenchymal Stem Cell Growth and Osteogenesis. Stem Cells International. 2018;2018. 5928935. https://doi.org/10.1155/2018/5928935

Liimatainen V, Vuckovac M, Jokinen V, Sariola V, Hokkanen MJ, Zhou Q et al. Mapping microscale wetting variations on biological and synthetic water-repellent surfaces. Nature Communications. 2017 Dec 1;8(1). 1798. https://doi.org/10.1038/s41467-017-01510-7

Emmert-Streib F, Dehmer M, Yli-Harja O. Lessons from the human genome project: Modesty, honesty, and realism. Frontiers in Genetics. 2017 Nov 23;8(NOV). 184. https://doi.org/10.3389/fgene.2017.00184

Björk S, Ojala EA, Nordström T, Ahola A, Liljeström M, Hyttinen J et al. Evaluation of optogenetic electrophysiology tools in human stem cell-derived cardiomyocytes. Frontiers in Physiology. 2017 Nov 2;8(NOV). 884. https://doi.org/10.3389/fphys.2017.00884

Fedele C, De Gregorio M, Netti PA, Cavalli S, Attanasio C. Azopolymer photopatterning for directional control of angiogenesis. Acta Biomaterialia. 2017 Nov 1;63:317-325. https://doi.org/10.1016/j.actbio.2017.09.022

Javanainen M, Martinez-Seara H, Vattulainen I. Excessive aggregation of membrane proteins in the Martini model. PLoS ONE. 2017 Nov 1;12(11). e0187936. https://doi.org/10.1371/journal.pone.0187936

Ferreira ARV, Haapanen J, Mäkelä JM, Bratvold JE, Nilsen O, Tuominen M et al. Comparison of different coating techniques on the properties of FucoPol films. International Journal of Biological Macromolecules. 2017 Oct 1;103:268-274. https://doi.org/10.1016/j.ijbiomac.2017.05.021

Enkavi G, Mikkolainen H, Güngör B, Ikonen E, Vattulainen I. Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin. PLoS Computational Biology. 2017 Oct 1;13(10). e1005831. https://doi.org/10.1371/journal.pcbi.1005831

Granberg KJ, Annala M, Lehtinen B, Kesseli J, Haapasalo J, Ruusuvuori P et al. Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas. Neuro-Oncology. 2017 Sep 1;19(9):1206-1216. https://doi.org/10.1093/neuonc/nox028

Sciacca MFM, Romanucci V, Zarrelli A, Monaco I, Lolicato F, Spinella N et al. Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry. ACS Chemical Neuroscience. 2017 Aug 16;8(8):1767-1778. https://doi.org/10.1021/acschemneuro.7b00110

Laurén P, Somersalo P, Pitkänen I, Lou YR, Urtti A, Partanen J et al. Nanofibrillar cellulose-alginate hydrogel coated surgical sutures as cell-carrier systems. PLoS ONE. 2017 Aug 1;12(8). e0183487. https://doi.org/10.1371/journal.pone.0183487

Juchheim J, Annighöfer P, Ammer C, Calders K, Raumonen P, Seidel D. How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees. TREES-STRUCTURE AND FUNCTION. 2017 Jul 14;31(5):1723–1735. https://doi.org/10.1007/s00468-017-1581-z

Tripathi S, Lloyd-Price J, Ribeiro A, Yli-Harja O, Dehmer M, Emmert-Streib F. sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters. BMC Bioinformatics. 2017 Jul 4;18(1). 325. https://doi.org/10.1186/s12859-017-1731-8

Vuorio J, Vattulainen I, Martinez-Seara H. Atomistic fingerprint of hyaluronan–CD44 binding. PLoS Computational Biology. 2017 Jul 1;13(7). e1005663. https://doi.org/10.1371/journal.pcbi.1005663

Niinimäki S, Narra N, Härkönen L, Abe S, Nikander R, Hyttinen J et al. The relationship between loading history and proximal femoral diaphysis cross-sectional geometry. American Journal of Human Biology. 2017 Jul 1;29(4). e22965. https://doi.org/10.1002/ajhb.22965

Nogueira IBR, Ribeiro AM, Martins MAF, Rodrigues AE, Koivisto H, Loureiro JM. Dynamics of a True Moving Bed separation process: Linear model identification and advanced process control. Journal of Chromatography A. 2017 Jun 30;1504. https://doi.org/10.1016/j.chroma.2017.04.060

Mokkila S, Postila PA, Rissanen S, Juhola H, Vattulainen I, Róg T. Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. ACS Chemical Neuroscience. 2017 Jun 21;8(6):1242-1250. https://doi.org/10.1021/acschemneuro.6b00395

Urbanucci A, Barfeld SJ, Kytölä V, Itkonen HM, Coleman IM, Vodák D et al. Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer. Cell Reports. 2017 Jun 6;19(10):2045-2059. https://doi.org/10.1016/j.celrep.2017.05.049

Rissanen S, Grzybek M, Orlowski A, Róg T, Cramariuc O, Levental I et al. Phase partitioning of GM1 and its bodipy-labeled analog determine their different binding to Cholera Toxin. Frontiers in Physiology. 2017 May 9;8(MAY). 252. https://doi.org/10.3389/fphys.2017.00252

Lehtinen B, Raita A, Kesseli J, Annala M, Nordfors K, Yli-Harja O et al. Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas. BMC Cancer. 2017 May 3;17(1). 310. https://doi.org/10.1186/s12885-017-3274-9

Manna M, Javanainen M, Martinez-Seara Monne H, Gabius H-J, Rog T, Vattulainen I. Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation. Biochimica et Biophysica Acta: Biomembranes. 2017 May 1;1859(5):870-878. https://doi.org/10.1016/j.bbamem.2017.01.033

Mah PT, Novakovic D, Saarinen J, van Landeghem S, Peltonen L, Laaksonen T et al. Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy. Pharmaceutical Research. 2017 May;34(5):957-970. https://doi.org/10.1007/s11095-016-2046-6

Kahraman M, Ozbay A, Yuksel H, Solmaz R, Demir B, Caglayan H. Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. Plasmonics. 2017 Apr 5;1-11. https://doi.org/10.1007/s11468-017-0573-6

Higashino T, Nakatsuji H, Fukuda R, Okamoto H, Imai H, Matsuda T et al. Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging. ChemBioChem. 2017 Mar 24;18(10):951-959. https://doi.org/10.1002/cbic.201700071

Bilkova E, Pleskot R, Rissanen S, Sun S, Czogalla A, Cwiklik L et al. Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition. Journal of the American Chemical Society. 2017 Mar 22;139(11):4019-4024. https://doi.org/10.1021/jacs.6b11760

Milani R, Houbenov N, Fernandez-Palacio F, Cavallo G, Luzio A, Haataja J et al. Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains. CheM. 2017 Mar 9;2(3):417-426. https://doi.org/10.1016/j.chempr.2017.02.003

Euro L, Haapanen O, Róg T, Vattulainen I, Suomalainen A, Sharma V. Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis. Biochemistry. 2017 Mar 7;56(9):1227-1238. https://doi.org/10.1021/acs.biochem.6b00934

Lehtinen T, Santala V, Santala S. Twin-layer biosensor for real-time monitoring of alkane metabolism. FEMS Microbiology Letters. 2017 Mar 1;364(6). fnx053. https://doi.org/10.1093/femsle/fnx053

Guixà-González R, Albasanz JL, Rodriguez-Espigares I, Pastor M, Sanz F, Martí-Solano M et al. Membrane cholesterol access into a G-protein-coupled receptor. Nature Communications. 2017 Feb 21;8. 14505. https://doi.org/10.1038/ncomms14505

Izdebskaya Y, Shvedov V, Assanto G, Krolikowski W. Magnetic routing of light-induced waveguides. Nature Communications. 2017 Feb 15;8. 14452. https://doi.org/10.1038/ncomms14452

Sislian R, da Silva FV, Gedraite R, Jokinen H, Rajan DK. The use of mathematical modeling for the development of a low cost fuzzy gain schedule neutralization control system. In Transactions on Engineering Technologies: World Congress on Engineering and Computer Science 2015. Springer Singapore. 2017. p. 525-539 https://doi.org/10.1007/978-981-10-2717-8_37

Kuuliala L, Abatih E, Ioannidis AG, Vanderroost M, De Meulenaer B, Ragaert P et al. Multivariate statistical analysis for the identification of potential seafood spoilage indicators. Food Control. 2017 Feb 1;84:49-60. https://doi.org/10.1016/j.foodcont.2017.07.018

Balanta MAG, Orsi Gordo V, Carvalho ARH, Puustinen J, Alghamdi HM, Henini M et al. Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells. Journal of Luminescence. 2017 Feb;182:49-52. https://doi.org/10.1016/j.jlumin.2016.10.008

Rahmatallah Y, Zybailov B, Emmert-Streib F, Glazko G. GSAR: Bioconductor package for Gene Set analysis in R. BMC Bioinformatics. 2017 Jan 24;18(1). 61. https://doi.org/10.1186/s12859-017-1482-6

Hyysalo A, Ristola M, Joki T, Honkanen M, Vippola M, Narkilahti S. Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro. MACROMOLECULAR BIOSCIENCE. 2017;17(7). 1600517. https://doi.org/10.1002/mabi.201600517

Grabon A, Orłowski A, Tripathi A, Vuorio J, Javanainen M, Róg T et al. Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle. Journal of Biological Chemistry. 2017;292(35):14438-14455. https://doi.org/10.1074/jbc.M117.791467

Khorramdel B, Torkkeli A, Mäntysalo M. Electrical Contacts in SOI MEMS Using Aerosol Jet Printing. IEEE Journal of the Electron Devices Society. 2017;6:34-40. https://doi.org/10.1109/JEDS.2017.2764498

Glazko G, Rahmatallah Y, Zybailov B, Emmert-Streib F. Extracting the strongest signals from omics data: Differentially expressed pathways and beyond. In Methods in Molecular Biology. HUMANA PRESS INC. 2017. p. 125-159. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-7027-8_7

Valkonen M, Kartasalo K, Liimatainen K, Nykter M, Latonen L, Ruusuvuori P. Metastasis detection from whole slide images using local features and random forests. Cytometry Part A. 2017;91(6):555-565. https://doi.org/10.1002/cyto.a.23089

Wnętrzak A, Makyła-Juzak K, Filiczkowska A, Kulig W, Dynarowicz-Łątka P. Oxysterols Versus Cholesterol in Model Neuronal Membrane. I. The Case of 7-Ketocholesterol. The Langmuir Monolayer Study. Journal of Membrane Biology. 2017;250(5):553–564. https://doi.org/10.1007/s00232-017-9984-8

Lahbib I, Valkonen A, Rzaigui M, Smirani W. Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex. Journal of Cluster Science. 2017;28(4):2239–2252. https://doi.org/10.1007/s10876-017-1217-x

Wu X, Bhattarai A, Korkola P, Pertovaara H, Eskola H, Kellokumpu-Lehtinen PL. The Association Between Liver and Tumor [18F]FDG Uptake in Patients with Diffuse Large B Cell Lymphoma During Chemotherapy. Molecular Imaging and Biology. 2017;19(5):787–794. https://doi.org/10.1007/s11307-017-1044-3

Kalli AC, Rog T, Vattulainen I, Campbell ID, Sansom MSP. The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations. Journal of Membrane Biology. 2017;250:337-351. https://doi.org/10.1007/s00232-016-9908-z

Kandavalli V, Startceva S, Sanches Ribeiro A. Transcription Initiation Controls Skewness of the Distribution of Intervals Between RNA Productions. In Paulo J.S G, editor, 31st European Simulation and Modelling Conference: ESM'2017. Portugal: EUROSIS. 2017. p. 397-403

Halonen H, Kyllönen L, Ihalainen TO, Miettinen S, Hyttinen J. Abstract: Direction as a vibration loading parameter in bone tissue engineering. 2016. Paper presented at BioMediTech Research Day 2016, Tampere, Finland.

Stupnikov A, Tripathi S, De Matos Simoes R, McArt D, Salto-Tellez M, Glazko G et al. SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 2016 Nov 1;32(21):3345-3347. https://doi.org/10.1093/bioinformatics/btw475

Will OM, Purcz N, Chalaris A, Heneweer C, Boretius S, Purcz L et al. Increased survival rate by local release of diclofenac in a murine model of recurrent oral carcinoma. International Journal of Nanomedicine. 2016 Oct 12;11:5311-5321. https://doi.org/10.2147/IJN.S109199

Kandavalli VK, Tran H, Ribeiro AS. Effects of σ factor competition are promoter initiation kinetics dependent. Biochimica et Biophysica Acta: Gene Regulatory Mechanisms. 2016 Oct 1;1859(10):1281-1288. https://doi.org/10.1016/j.bbagrm.2016.07.011

Kuleta P, Sarewicz M, Postila P, Róg T, Osyczka A. Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1. Biochimica et Biophysica Acta: Bioenergetics. 2016 Oct 1;1857(10):1661-1668. https://doi.org/10.1016/j.bbabio.2016.07.003

Vattulainen I, Róg T. Lipid membranes: Theory and simulations bridged to experiments. Biochimica et Biophysica Acta: Biomembranes. 2016 Oct 1;1858(10):2251-2253. https://doi.org/10.1016/j.bbamem.2016.06.007

Javanainen M, Martinez-Seara H. Efficient preparation and analysis of membrane and membrane protein systems. Biochimica et Biophysica Acta: Biomembranes. 2016 Oct;1858(10):2468-2482. https://doi.org/10.1016/j.bbamem.2016.02.036

Kepczynski M, Róg T. Functionalized lipids and surfactants for specific applications. Biochimica et Biophysica Acta: Biomembranes. 2016 Oct;1858(10):2362-2379. https://doi.org/10.1016/j.bbamem.2016.02.038

Zhou Q, Sariola V, Latifi K, Liimatainen V. Controlling the motion of multiple objects on a Chladni plate. Nature Communications. 2016 Sep 9;7. 12764. https://doi.org/10.1038/ncomms12764

Korpinen L, Kuisti H, Elovaara J. Current densities and total contact currents during forest clearing tasks under 400kV power lines. Bioelectromagnetics. 2016 Sep 1;37(6):423-428. https://doi.org/10.1002/bem.21980

Kaurola P, Sharma V, Vonk A, Vattulainen I, Róg T. Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. Biochimica et Biophysica Acta: Biomembranes. 2016 Sep 1;1858(9):2116-2122. https://doi.org/10.1016/j.bbamem.2016.06.016

Tan LC, Nancharaiah YV, van Hullebusch ED, Lens PNL. Selenium: environmental significance, pollution, and biological treatment technologies. Biotechnology Advances. 2016 Sep 1;34(5):886-907. https://doi.org/10.1016/j.biotechadv.2016.05.005

Emmert-Streib F, Dehmer M, Yli-Harja O. Against dataism and for data sharing of big biomedical and clinical data with research parasites. Frontiers in Genetics. 2016 Aug 31;7(AUG). 154. https://doi.org/10.3389/fgene.2016.00154

Sharma V, Wikström M. The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. Biochimica et Biophysica Acta: Bioenergetics. 2016 Aug;1857(8):1111-1115. https://doi.org/10.1016/j.bbabio.2016.02.008

Halonen H, Kyllönen L, Ihalainen TO, Miettinen S, Hyttinen J. Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells. 2016. Paper presented at Congress of the European Society of biomechanics ESB2016, Lyon, France.

Santala V, Karp M, Santala S. Bioluminescence-based system for rapid detection of natural transformation. FEMS Microbiology Letters. 2016 Jul 1;363(13). fnw125. https://doi.org/10.1093/femsle/fnw125

Roszak J, Catalán J, Järventaus H, Lindberg HK, Suhonen S, Vippola M et al. Effect of particle size and dispersion status on cytotoxicity and genotoxicity of zinc oxide in human bronchial epithelial cells. Mutation Research: Genetic Toxicology and Environmental Mutagenesis. 2016 Jul 1;805:7-18. https://doi.org/10.1016/j.mrgentox.2016.05.008

Lajunen T, Kontturi L-S, Viitala L, Manna M, Cramariuc O, Róg T et al. Indocyanine Green-Loaded Liposomes for Light-Triggered Drug Release. Molecular Pharmaceutics. 2016 Jun 6;13(6):2095-2107. https://doi.org/10.1021/acs.molpharmaceut.6b00207

Razavi A, Valkama M, Lohan ES. Robust statistical approaches for RSS-based floor detection in indoor localization. Sensors. 2016 Jun 1;16(6). 793. https://doi.org/10.3390/s16060793

Häkkinen A, Ribeiro AS. Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinformatics. 2016 May 1;32(9):1346-1352. https://doi.org/10.1093/bioinformatics/btv744

Emmert-Streib F, Tuomisto L, Yli-Harja O. The need for formally defining "modern medicine" by means of experimental design. Frontiers in Genetics. 2016 Apr 20;7(APR). 60. https://doi.org/10.3389/fgene.2016.00060

Vuornos K, Björninen M, Talvitie E, Paakinaho K, Kellomäki M, Huhtala H et al. Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering. Tissue Engineering Part A. 2016 Mar 1;22(5-6):513-523. https://doi.org/10.1089/ten.tea.2015.0276

Nanni L, Paci M, Dos Santos FLC, Skottman H, Juuti-Uusitalo K, Hyttinen J. Texture descriptors ensembles enable image-based classification of maturation of human stem cell-derived retinal pigmented epithelium. PLoS ONE. 2016 Feb 1;11(2). e0149399. https://doi.org/10.1371/journal.pone.0149399

Järvinen P, Nybond S, Marcourt L, Ferreira Queiroz E, Wolfender JL, Mettälä A et al. Cell-based bioreporter assay coupled to HPLC micro-fractionation in the evaluation of antimicrobial properties of the basidiomycete fungus Pycnoporus cinnabarinus. Pharmaceutical Biology. 2016 Jan 21;54(6):1-8. https://doi.org/10.3109/13880209.2015.1103754

Nancharaiah YV, Mohan SV, Lens PNL. Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. Trends in Biotechnology. 2016;34(2):137-155. https://doi.org/10.1016/j.tibtech.2015.11.003

Kulig W, Cwiklik L, Jurkiewicz P, Rog T, Vattulainen I. Cholesterol oxidation products and their biological importance. Chemistry and Physics of Lipids. 2016;199:144-160. https://doi.org/10.1016/j.chemphyslip.2016.03.001

Lahti J, Lavonen J, Lahtinen K, Johansson P, Seppänen T, Cameron DC. Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating. In TAPPI International Conference on Nanotechnology for Renewable Materials 2016. Vol. 2. TAPPI Press. 2016. p. 684-706

Teppola H, Sarkanen JR, Jalonen TO, Linne M-L. Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol. Neurochemical Research. 2016;41(4):731-747. https://doi.org/10.1007/s11064-015-1743-6

Metzler R, Jeon JH, Cherstvy AG. Non-Brownian diffusion in lipid membranes: Experiments and simulations. Biochimica et Biophysica Acta: Biomembranes. 2016;215:173–185. https://doi.org/10.1016/j.bbamem.2016.01.022

Neeli-Venkata R, Martikainen A, Gupta A, Goncalves N, Fonseca J, Ribeiro AS. Robustness of the process of nucleoid exclusion of protein aggregates in Escherichia coli. Journal of Bacteriology. 2016;198(6):898-906. https://doi.org/10.1128/JB.00848-15

Pöyry S, Vattulainen I. Role of charged lipids in membrane structures: Insight given by simulations. Biochimica et Biophysica Acta: Biomembranes. 2016;2322–2333. https://doi.org/10.1016/j.bbamem.2016.03.016

Saarinen JJ, Valtakari D, Bollström R, Stepien M, Haapanen J, Mäkelä JM et al. Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality. In Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. Vol. 4. TechConnect. 2016. p. 47-50

Rog T, Koivuniemi A. The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations. Biochimica et Biophysica Acta: Biomembranes. 2016;1858(1):97-103. https://doi.org/10.1016/j.bbamem.2015.10.023

Kuusela J, Kim J, Räsänen E, Aalto-Setälä K. The Effects of Pharmacological Compounds on Beat Rate Variations in Human Long QT-Syndrome Cardiomyocytes. Stem Cell Reviews and Reports. 2016;12(6):698–707. https://doi.org/10.1007/s12015-016-9686-0

Ruddock MW, De Matos Simoes R, O'Rourke D, Duggan B, Stevenson M, O'Kane HF et al. Urinary thrombomodulin levels were significantly higher following occupational exposure to chemicals, in the presence of dipstick protein, but not in the presence of dipstick blood. Biology and Medicine. 2016;8(1). 1000260. https://doi.org/10.4172/0974-8369.1000260

Linnanmäki L, Göransson H, Havulinna J, Sippola P, Karjalainen T, Leppänen OV. Validity of parameters in static linear testing of flexor tendon repair. Journal of Biomechanics. 2016;49(13):2785–2790. https://doi.org/10.1016/j.jbiomech.2016.06.022

Manzini S, Viiri LE, Marttila S, Aalto-Setälä K. A Comparative View on Easy to Deploy non-Integrating Methods for Patient-Specific iPSC Production. Stem Cell Reviews and Reports. 2015 Dec 1;11(6):900-908. https://doi.org/10.1007/s12015-015-9619-3

Cervinka T, Sievänen H, Lala D, Cheung AM, Giangregorio L, Hyttinen J. A new algorithm to improve assessment of cortical bone geometry in pQCT. Bone. 2015 Dec 1;81:721-730. https://doi.org/10.1016/j.bone.2015.09.015

Vanhatupa S, Ojansivu M, Autio R, Juntunen M, Miettinen S. Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells. Stem Cells Translational Medicine. 2015 Dec 1;4(12):1391-1402. https://doi.org/10.5966/sctm.2015-0042

Friis S, Kesminiene A, Espina C, Auvinen A, Straif K, Schüz J. European Code against Cancer 4th Edition: Medical exposures, including hormone therapy, and cancer. CANCER EPIDEMIOLOGY. 2015 Dec 1;39:S107-S119. https://doi.org/10.1016/j.canep.2015.08.003

McColl N, Auvinen A, Kesminiene A, Espina C, Erdmann F, de Vries E et al. European Code against Cancer 4th Edition: Ionising and non-ionising radiation and cancer. CANCER EPIDEMIOLOGY. 2015 Dec 1;39:S93-S100. https://doi.org/10.1016/j.canep.2015.03.016

Greinert R, de Vries E, Erdmann F, Espina C, Auvinen A, Kesminiene A et al. European Code against Cancer 4th Edition: Ultraviolet radiation and cancer. CANCER EPIDEMIOLOGY. 2015 Dec 1;39:S75-S83. https://doi.org/10.1016/j.canep.2014.12.014

Jia L, Sun Z, Wu X, Misteli T, Sharma V. Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. Genomics Data. 2015 Dec 1;6:277-279. https://doi.org/10.1016/j.gdata.2015.10.017

Liao TYA, Lau A, Joseph S, Hytönen V, Hmama Z. Improving the Immunogenicity of the Mycobacterium bovis BCG Vaccine by Non-Genetic Bacterial Surface Decoration Using the Avidin-Biotin System. PLoS ONE. 2015 Dec 1;10(12). e0145833. https://doi.org/10.1371/journal.pone.0145833

Kannisto MS, Mangayil RK, Shrivastava-Bhattacharya A, Pletschke BI, Karp MT, Santala VP. Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates. Biotechnology for Biofuels. 2015 Dec 1;8(1). 198. https://doi.org/10.1186/s13068-015-0389-6

Ravi A, Luthra A, Teixeira FL, Berger PR, Coe JV. Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. Plasmonics. 2015 Dec 1;10(6):1505-1512. https://doi.org/10.1007/s11468-015-9963-9

Marjakangas JM, Chen CY, Lakaniemi AM, Puhakka JA, Whang LM, Chang JS. Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. Biochemical Engineering Journal. 2015 Nov 5;103:177-184. https://doi.org/10.1016/j.bej.2015.07.011

Abeshouse A, Ahn J, Akbani R, Ally A, Amin S, Andry CD et al. The Molecular Taxonomy of Primary Prostate Cancer. Cell. 2015 Nov 5;163(4):1011-1025. https://doi.org/10.1016/j.cell.2015.10.025

Sharma V, Khurana S, Kubben N, Abdelmohsen K, Oberdoerffer P, Gorospe M et al. A BRCA1-interacting lncRNA regulates homologous recombination. EMBO REPORTS. 2015 Nov 1;16(11):1520-1534. https://doi.org/10.15252/embr.201540437

Zorzi GK, Párraga JE, Seijo B, Sanchez A. Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery. Colloids and Surfaces B: Biointerfaces. 2015 Nov 1;135:533-541. https://doi.org/10.1016/j.colsurfb.2015.08.008

Vapaavuori J, Laventure A, Bazuin CG, Lebel O, Pellerin C. Submolecular Plasticization Induced by Photons in Azobenzene Materials. Journal of the American Chemical Society. 2015 Oct 28;137(42):13510-13517. https://doi.org/10.1021/jacs.5b06611

Ryödi E, Metso S, Jaatinen P, Huhtala H, Saaristo R, Välimäki M et al. Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism. Journal of Clinical Endocrinology and Metabolism. 2015 Oct 1;100(10):3710-3717. https://doi.org/10.1210/jc.2015-1874

Hietanen T, Pitkänen M, Kapanen M, Kellokumpu-Lehtinen PL. Effects of single and fractionated irradiation on natural killer cell populations: Radiobiological characteristics of viability and cytotoxicity in vitro. Anticancer Research. 2015 Oct 1;35(10):5193-5200.

Tamminen P, Viheriäkoski T, Sydänheimo L, Ukkonen L. ESD qualification data used as the basis for building electrostatic discharge protected areas. Journal of Electrostatics. 2015 Oct 1;77:174-181. 3024. https://doi.org/10.1016/j.elstat.2015.08.009

Al Olama AA, Dadaev T, Hazelett DJ, Li Q, Leongamornlert D, Saunders EJ et al. Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans. HUMAN MOLECULAR GENETICS. 2015 Oct 1;24(19):5589-5602. ddv203. https://doi.org/10.1093/hmg/ddv203

Ylipää A, Kivinummi K, Kohvakka A, Annala M, Latonen L, Scaravilli M et al. Transcriptome sequencing reveals PCAT5 as a Novel ERG-Regulated long Noncoding RNA in prostate cancer. Cancer Research. 2015 Oct 1;75(19):4026-4031. https://doi.org/10.1158/0008-5472.CAN-15-0217

Moradi M, Enkavi G, Tajkhorshid E. Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate: Phosphate antiporter. Nature Communications. 2015 Sep 29;6. 8393. https://doi.org/10.1038/ncomms9393

Pashayan N, Pharoah PDP, Schleutker J, Talala K, Tammela TLJ, Määttänen L et al. Reducing overdiagnosis by polygenic risk-stratified screening: Findings from the Finnish section of the ERSPC. British Journal of Cancer. 2015 Sep 29;113(7):1086-1093. https://doi.org/10.1038/bjc.2015.289

Umbehr MH, Gurel B, Murtola TJ, Sutcliffe S, Peskoe SB, Tangen CM et al. Intraprostatic inflammation is positively associated with serum PSA in men with PSA <4 ngml-1, normal DRE and negative for prostate cancer. PROSTATE CANCER AND PROSTATIC DISEASES. 2015 Sep 14;18(3):264-269. https://doi.org/10.1038/pcan.2015.19

Kokko ME, Mäkinen AE, Sulonen MLK, Puhakka JA. Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions. Biochemical Engineering Journal. 2015 Sep 5;101:248-252. https://doi.org/10.1016/j.bej.2015.06.007

Vicentini C, Tylcz JB, Betrouni N, Mortier L, Mordon S. Is Daylight-PDT a good treatment option during solar eclipse? PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 2015 Sep 1;12(3):376-377. https://doi.org/10.1016/j.pdpdt.2015.04.002

Kaapu KJ, Ahti J, Tammela TLJ, Auvinen A, Murtola TJ. Sotalol, but not digoxin is associated with decreased prostate cancer risk: A population-based case-control study. International Journal of Cancer. 2015 Sep 1;137(5):1187-1195. https://doi.org/10.1002/ijc.29470

Sorkio A, Porter PJ, Juuti-Uusitalo K, Meenan BJ, Skottman H, Burke GA. Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells. Tissue Engineering Part A. 2015 Sep 1;21(17-18):2301-2314. https://doi.org/10.1089/ten.tea.2014.0640

Penttinen K, Siirtola H, Àvalos-Salguero J, Vainio T, Juhola M, Aalto-Setälä K. Novel analysis software for detecting and classifying Ca2+ transient abnormalities in stem cell-derived cardiomyocytes. PLoS ONE. 2015 Aug 26;10(8). e0135806. https://doi.org/10.1371/journal.pone.0135806

Rane JK, Ylipää A, Adamson R, Mann VM, Simms MS, Collins AT et al. Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data. British Journal of Cancer. 2015 Aug 11;113(4):611-615. https://doi.org/10.1038/bjc.2015.262

Sousa S, Brion R, Lintunen M, Kronqvist P, Sandholm J, Mönkkönen J et al. Human breast cancer cells educate macrophages toward the M2 activation status. BREAST CANCER RESEARCH. 2015 Aug 5;17(1). 101. https://doi.org/10.1186/s13058-015-0621-0

Koho T, Ihalainen TO, Stark M, Uusi-Kerttula H, Wieneke R, Rahikainen R et al. His-tagged norovirus-like particles: A versatile platform for cellular delivery and surface display. European Journal of Pharmaceutics and Biopharmaceutics. 2015 Jul 21;96:22-31. https://doi.org/10.1016/j.ejpb.2015.07.002

Tran H, Oliveira SMDD, Goncalves N, Ribeiro AS. Kinetics of the cellular intake of a gene expression inducer at high concentrations. Molecular Biosystems. 2015 Jul 20;11(9):2579-2587. https://doi.org/10.1039/c5mb00244c

Hokka M, Mirow N, Nagel H, Irqsusi M, Vogt S, Kuokkala VT. In-vivo deformation measurements of the human heart by 3D Digital Image Correlation. Journal of Biomechanics. 2015 Jul 16;48(10):2217-2220. https://doi.org/10.1016/j.jbiomech.2015.03.015

Ojansivu M, Vanhatupa S, Björkvik L, Häkkänen H, Kellomäki M, Autio R et al. Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells. Acta Biomaterialia. 2015 Jul 15;21:190-203. https://doi.org/10.1016/j.actbio.2015.04.017

Koivuniemi A, Vattulainen I. Biogenesis of Nascent High Density Lipoprotein Particles. Structure. 2015 Jul 9;23(7):1153-1154. 3212. https://doi.org/10.1016/j.str.2015.06.006

Marjakangas JM, Lakaniemi AM, Koskinen PEP, Chang JS, Puhakka JA. Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent. Biochemical Engineering Journal. 2015 Jul 5;99:48-54. https://doi.org/10.1016/j.bej.2015.03.006

Narra N, Blanquer SBG, Haimi SP, Grijpma DW, Hyttinen J. μCT based assessment of mechanical deformation of designed PTMC scaffolds. Clinical Hemorheology and Microcirculation. 2015 Jul 2;60(1):99-108. https://doi.org/10.3233/CH-151931

Rodrigues PC, Monteiro A, Lourenço VM. A robust AMMI model for the analysis of genotype-by-environment data. Bioinformatics. 2015 Jul 1;32(1):58-66. https://doi.org/10.1093/bioinformatics/btv533

Nybond S, Karp M, Yrjönen T, Tammela P. Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts. Journal of Microbiological Methods. 2015 Jul 1;114:54-56. https://doi.org/10.1016/j.mimet.2015.04.014

Kulig W, Olzyńska A, Jurkiewicz P, Kantola AM, Komulainen S, Manna M et al. Cholesterol under oxidative stress: How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. Free Radical Biology and Medicine. 2015 Jul 1;84:30-41. https://doi.org/10.1016/j.freeradbiomed.2015.03.006

Kapanen M, Laaksomaa M, Tulijoki T, Kellokumpu-Lehtinen PL, Hyödynmaa S. Effects of remedies made in patient setup process on residual setup errors and margins in head and neck cancer radiotherapy based on 2D image guidance. Reports of Practical Oncology and Radiotherapy. 2015 Jul 1;20(4):292-298. https://doi.org/10.1016/j.rpor.2015.03.002

Oliveira SMD, Chandraseelan JG, Häkkinen A, Goncalves NSM, Yli-Harja O, Startceva S et al. Single-cell kinetics of a repressilator when implemented in a single-copy plasmid. Molecular Biosystems. 2015 Jul 1;11(7):1939-1945. https://doi.org/10.1039/c5mb00012b

Massera J, Kokkari A, Närhi T, Hupa L. The influence of SrO and CaO in silicate and phosphate bioactive glasses on human gingival fibroblasts. Journal of Materials Science: Materials in Medicine. 2015 Jun 25;26(6). 196. https://doi.org/10.1007/s10856-015-5528-x

Laulumaa S, Nieminen T, Lehtimäki M, Aggarwal S, Simons M, Koza MM et al. Dynamics of the peripheral membrane protein P2 from human myelin measured by neutron scattering: A Comparison between wild-type protein and a hinge mutant. PLoS ONE. 2015 Jun 11;10(6). e128954. https://doi.org/10.1371/journal.pone.0128954

Turpeinen H, Seppälä I, Lyytikäinen LP, Raitoharju E, Hutri-Kähönen N, Levula M et al. A genome-wide expression quantitative trait loci analysis of proprotein convertase subtilisin/kexin enzymes identifies a novel regulatory gene variant for FURIN expression and blood pressure. HUMAN GENETICS. 2015 Jun 1;134(6):627-636. https://doi.org/10.1007/s00439-015-1546-5

Nguyen SD, Javanainen M, Rissanen S, Zhao H, Huusko J, Kivelä AM et al. Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation. Journal of Lipid Research. 2015 Jun 1;56(6):1206-1221. https://doi.org/10.1194/jlr.M059485

Zoni E, Van Der Horst G, Van De Merbel AF, Chen L, Rane JK, Pelger RCM et al. MIR-25 modulates invasivenessand dissemination of human prostate cancer cells via regulation of αv-and α6-integrin expression. Cancer Research. 2015 Jun 1;75(11):2326-2336. https://doi.org/10.1158/0008-5472.CAN-14-2155

Dehmer M, Kurt Z, Emmert-Streib F, Them C, Schulc E, Hofer S. Structural analysis of treatment cycles representing transitions between nursing organizational units inferred from diabetes. PLoS ONE. 2015 Jun 1;10(6). e0127152. https://doi.org/10.1371/journal.pone.0127152

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G et al. Using shRNA experiments to validate gene regulatory networks. Genomics Data. 2015 Jun 1;4:123-126. https://doi.org/10.1016/j.gdata.2015.03.011

Thomsen FB, Brasso K, Christensen IJ, Johansson JE, Angelsen A, Tammela TLJ et al. Survival benefit of early androgen receptor inhibitor therapy in locally advanced prostate cancer: Long-term follow-up of the SPCG-6 study. EUROPEAN JOURNAL OF CANCER. 2015 May 30;51(10):1283-1292. https://doi.org/10.1016/j.ejca.2015.03.021

Fischer D, Wahlfors T, Mattila H, Oja H, Tammela TLJ, Schleutker J. MiRNA profiles in lymphoblastoid cell lines of finnish prostate cancer families. PLoS ONE. 2015 May 28;10(5). e0127427. https://doi.org/10.1371/journal.pone.0127427

Laitinen VH, Rantapero T, Fischer D, Vuorinen EM, Tammela TLJ, Wahlfors T et al. Fine-mapping the 2q37 and 17q11.2-q22 loci for novel genes and sequence variants associated with a genetic predisposition to prostate cancer. International Journal of Cancer. 2015 May 15;136(10):2316-2327. https://doi.org/10.1002/ijc.29276

Kilpeläinen TP, Tammela TLJ, Malila N, Hakama M, Santti H, Määttänen L et al. The Finnish prostate cancer screening trial: Analyses on the screening failures. International Journal of Cancer. 2015 May 15;136(10):2437-2443. https://doi.org/10.1002/ijc.29300

Matos Simoes RD, Dalleau S, Williamson KE, Emmert-Streib F. Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data. BMC Systems Biology. 2015 May 14;9. 21. https://doi.org/10.1186/s12918-015-0165-z

Penttinen K, Swan H, Vanninen S, Paavola J, Lahtinen AM, Kontula K et al. Antiarrhythmic effects of dantrolene in patients with catecholaminergic polymorphic ventricular tachycardia and replication of the responses using iPSC models. PLoS ONE. 2015 May 1;10(5). e0125366. https://doi.org/10.1371/journal.pone.0125366

Sorkio AE, Vuorimaa-Laukkanen EP, Hakola HM, Liang H, Ujula TA, Valle-Delgado JJ et al. Biomimetic collagen I and IV double layer Langmuir-Schaefer films asmicroenvironment for human pluripotent stem cell derived retinal pigment epithelial cells. Biomaterials. 2015 May 1;51:257-269. https://doi.org/10.1016/j.biomaterials.2015.02.005

Saarimäki L, Tammela TL, Määttänen L, Taari K, Kujala PM, Raitanen J et al. Family history in the finnish prostate cancer screening trial. International Journal of Cancer. 2015 May 1;136(9):2172-2177. https://doi.org/10.1002/ijc.29243

Veskimäe K, Staff S, Tabaro F, Nykter M, Isola J, Mäenpää J. Microarray analysis of differentially expressed genes in ovarian and fallopian tube epithelium from risk-reducing salpingo-oophorectomies. Genes Chromosomes and Cancer. 2015 May 1;54(5):276-287. https://doi.org/10.1002/gcc.22241

Saurus P, Kuusela S, Lehtonen E, Hyvönen ME, Ristola M, Fogarty CL et al. Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway. CELL DEATH AND DISEASE. 2015 May 1;6(5). e1752. https://doi.org/10.1038/cddis.2015.125

Ghosh R, De Campos MKF, Huang J, Huh SK, Orlowski A, Yang Y et al. Sec14-nodulin proteins and the patterning of phosphoinositide landmarks for developmental control of membrane morphogenesis. Molecular Biology of the Cell. 2015 May 1;26(9):1764-1781. https://doi.org/10.1091/mbc.E14-10-1475

Raghupathy R, Anilkumar AA, Polley A, Singh PP, Yadav M, Johnson C et al. Transbilayer lipid interactions mediate nanoclustering of lipid-anchored proteins. Cell. 2015 Apr 23;161(3):581-594. https://doi.org/10.1016/j.cell.2015.03.048

Sharma V, Ala-Vannesluoma P, Vattulainen I, Wikström M, Róg T. Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase. Biochimica et Biophysica Acta: Bioenergetics. 2015 Apr 17;1847(8):690-697. https://doi.org/10.1016/j.bbabio.2015.04.007

Schüz J, Espina C, Villain P, Herrero R, Leon ME, Minozzi S et al. European code against cancer 4th edition: 12 ways to reduce your cancer risk. CANCER EPIDEMIOLOGY. 2015 Apr 9;39:S1-S10. https://doi.org/10.1016/j.canep.2015.05.009

Moriya T, Acar E, Cheng RH, Ruotsalainen U. A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstruction. Journal of Structural Biology. 2015 Apr 3;191(3):318–331. https://doi.org/10.1016/j.jsb.2015.07.007

Tuohinen SS, Skyttä T, Virtanen V, Luukkaala T, Kellokumpu-Lehtinen PL, Raatikainen P. Early effects of adjuvant breast cancer radiotherapy on right ventricular systolic and diastolic function. Anticancer Research. 2015 Apr 1;35(4):2141-2147.

Kreuzer M, Auvinen A, Cardis E, Hall J, Jourdain JR, Laurier D et al. Low-dose ionising radiation and cardiovascular diseases - Strategies for molecular epidemiological studies in Europe. MUTATION RESEARCH: REVIEWS IN MUTATION RESEARCH. 2015 Apr 1;764:90-100. https://doi.org/10.1016/j.mrrev.2015.03.002

Liu J, Jin C, Cherian RM, Karlsson NG, Holgersson J. O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs. Journal of Biotechnology. 2015 Apr 1;199:77-89. https://doi.org/10.1016/j.jbiotec.2015.02.017

Marttila S, Kananen L, Häyrynen S, Jylhävä J, Nevalainen T, Hervonen A et al. Ageing-associated changes in the human DNA methylome: Genomic locations and effects on gene expression. BMC Genomics. 2015 Mar 14;16(1). 179. https://doi.org/10.1186/s12864-015-1381-z

Potapov I, Zhurov B, Volkov E. Multi-stable dynamics of the non-adiabatic repressilator. Journal of the Royal Society. Interface. 2015 Mar 6;12(104). 20141315. https://doi.org/10.1098/rsif.2014.1315

Mordon S, Cochrane C, Tylcz JB, Betrouni N, Mortier L, Koncar V. Light emitting fabric technologies for photodynamic therapy. PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 2015 Mar 1;12(1):1-8. https://doi.org/10.1016/j.pdpdt.2014.11.002

Skyttä T, Tuohinen S, Virtanen V, Raatikainen P, Kellokumpu-Lehtinen PL. The concurrent use of aromatase inhibitors and radiotherapy induces echocardiographic changes in patients with breast cancer. Anticancer Research. 2015 Mar 1;35(3):1559-1566.

Webb RC, Pielak RM, Bastien P, Ayers J, Niittynen J, Kurniawan J et al. Thermal transport characteristics of human skin measured in vivo using ultrathin conformal arrays of thermal sensors and actuators. PLoS ONE. 2015 Feb 6;10(2). e0118131. https://doi.org/10.1371/journal.pone.0118131

Nybond S, Ghemtio L, Nawrot DA, Karp M, Xhaard H, Tammela P. Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds. Assay and Drug Development Technologies. 2015 Feb 1;13(1):25-33. https://doi.org/10.1089/adt.2014.625

Virman JP, Bono P, Luukkaala T, Sunela K, Kujala P, Kellokumpu-Lehtinen PL. VEGFR3 and CD31 as prognostic factors in renal cell cancer. Anticancer Research. 2015 Feb 1;35(2):921-927.

Bateman A, Martin MJ, O'Donovan C, Magrane M, Apweiler R, Alpi E et al. UniProt: A hub for protein information. Nucleic Acids Research. 2015 Jan 28;43(D1):D204-D212. https://doi.org/10.1093/nar/gku989

Emmert-Streib F, Zhang SD, Hamilton P. Computational cancer biology: education is a natural key to many locks. BMC Cancer. 2015 Jan 15;15(1). 7. https://doi.org/10.1186/s12885-014-1002-2

Schroeder CA, Pluharová E, Seidel R, Schroeder WP, Faubel M, Slavíçek P et al. Oxidation half-reaction of aqueous nucleosides and nucleotides via photoelectron spectroscopy augmented by ab initio calculations. Journal of the American Chemical Society. 2015 Jan 14;137(1):201-209. https://doi.org/10.1021/ja508149e

Cömert A, Hyttinen J. A motion artifact generation and assessment system for the rapid testing of surface biopotential electrodes. Physiological Measurement. 2015 Jan 1;36(1):1-25. 1. https://doi.org/10.1088/0967-3334/36/1/1

Heijnsdijk EAM, De Carvalho TMD, Auvinen A, Zappa M, Nelen V, Kwiatkowski M et al. Cost-effectiveness of prostate cancer screening: A simulation study based on ERSPC data. JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2015 Jan 1;107(1). dju366. https://doi.org/10.1093/jnci/dju366

Häkkinen A, Ribeiro AS. Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinformatics. 2015 Jan 1;31(1):69-75. https://doi.org/10.1093/bioinformatics/btu592

Takalo R, Hytti H, Ihalainen H, Sohlberg A. Adaptive autoregressive model for reduction of noise in SPECT. Computational and Mathematical Methods in Medicine. 2015;2015. 494691. https://doi.org/10.1155/2015/494691

Lehtonen SI, Taskinen B, Ojala E, Kukkurainen S, Rahikainen R, Riihimäki TA et al. Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning. Protein Engineering Design and Selection. 2015;28(1):23-28. https://doi.org/10.1093/protein/gzu050

Kulig W, Jurkiewicz P, Olzyńska A, Tynkkynen J, Javanainen M, Manna M et al. Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate. Biochimica et Biophysica Acta: Biomembranes. 2015;1848(2):422-432. https://doi.org/10.1016/j.bbamem.2014.10.032

Raitoharju E, Oksala N, Lehtimäki T. I microRNA nella placca aterosclerotica. Biochimica Clinica. 2015;39(1):56-67.

Akimova AV, Rychkov GN, Grin MA, Filippova NA, Golovina GV, Durandin NA et al. Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives. ACTA NATURAE. 2015;7(1):109-116.

Tienaho J, Sarjala T, Franzén R, Karp M. Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux. Journal of Microbiological Methods. 2015;118:78-80. 4723. https://doi.org/10.1016/j.mimet.2015.08.018

Bechet D, Auger F, Couleaud P, Marty E, Ravasi L, Durieux N et al. Multifunctional ultrasmall nanoplatforms for vascular-targeted interstitial photodynamic therapy of brain tumors guided by real-time MRI. NANOMEDICINE: NANOTECHNOLOGY BIOLOGY AND MEDICINE. 2015;11(3):657-670. https://doi.org/10.1016/j.nano.2014.12.007

Taskinen B, Zauner D, Lehtonen SI, Koskinen M, Thomson C, Kähkönen N et al. Switchavidin: Reversible biotin-avidin-biotin bridges with high affinity and specificity. Bioconjugate Chemistry. 2014 Dec 17;25(12):2233-2243. https://doi.org/10.1021/bc500462w

Rahmatallah Y, Emmert-Streib F, Glazko G. Comparative evaluation of gene set analysis approaches for RNA-Seq data. BMC Bioinformatics. 2014 Dec 5;15(1). 397. https://doi.org/10.1186/s12859-014-0397-8

Santala S, Karp M, Santala V. Rationally engineered synthetic coculture for improved biomass and product formation. PLoS ONE. 2014 Dec 3;9(12). e113786. https://doi.org/10.1371/journal.pone.0113786

Azaïs H, Moussaron A, Bach SK, Bassil A, Betrouni N, Frochot C et al. FRα: une cible pour la thérapie photodynamique prophylactique des métastases péritonéales ovariennes? BULLETIN DU CANCER. 2014 Dec 1;101(12):1109-1113. https://doi.org/10.1684/bdc.2014.1977

Kalimeri M, Girard E, Madern D, Sterpone F. Interface matters: The stiffness route to stability of a thermophilic tetrameric malate dehydrogenase. PLoS ONE. 2014 Dec 1;9(12). e113895. https://doi.org/10.1371/journal.pone.0113895

Kukkurainen S, Määttä JA, Saeger J, Valjakka J, Vogel V, Hytönen VP. The talin-integrin interface under mechanical stress. Molecular Biosystems. 2014 Dec 1;10(12):3217-3228. https://doi.org/10.1039/c4mb00341a

Faisal A, Peltonen J, Georgii E, Rung J, Kaski S. Toward computational cumulative biology by combining models of biological datasets. PLoS ONE. 2014 Nov 26;9(11). e113053. https://doi.org/10.1371/journal.pone.0113053

Takala H, Lehtivuori H, Hammarén H, Hytönen VP, Ihalainen JA. Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome. Biochemistry. 2014 Nov 18;53(45):7076-7085. https://doi.org/10.1021/bi501180s

Walsh L, Zhang W, Shore RE, Auvinen A, Laurier D, Wakeford R et al. A framework for estimating radiation-related cancer risks in Japan from the 2011 Fukushima nuclear accident. RADIATION RESEARCH. 2014 Nov 1;182(5):556-572. https://doi.org/10.1667/RR13779.1

Laaksomaa M, Kapanen M, Skyttä T, Peltola S, Hyödynmaa S, Kellokumpu-Lehtinen PL. Estimation of optimal matching position for orthogonal kV setup images and minimal setup margins in radiotherapy of whole breast and lymph node areas. Reports of Practical Oncology and Radiotherapy. 2014 Nov 1;19(6):369-375. https://doi.org/10.1016/j.rpor.2014.05.001

Murtola TJ, Visvanathan K, Artama M, Vainio H, Pukkala E. Statin use and breast cancer survival: A nationwide cohort study from Finland. PLoS ONE. 2014 Oct 20;9(10). e110231. https://doi.org/10.1371/journal.pone.0110231

Deng Y, Alicea-Velázquez NL, Bannwarth L, Lehtonen SI, Boggon TJ, Cheng HC et al. Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays. Journal of Proteome Research. 2014 Oct 3;13(10):4339-4346. https://doi.org/10.1021/pr500503q

Patrikoski M, Sivula J, Huhtala H, Helminen M, Salo F, Mannerström B et al. Different culture conditions modulate the immunological properties of adipose stem cells. Stem Cells Translational Medicine. 2014 Oct 2;3(10):1220-1230. https://doi.org/10.5966/sctm.2013-0201

Rasappa S, Schulte L, Borah D, Morris MA, Ndoni S. Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography. Colloids and Interface Science Communications. 2014 Oct 1;2:1-5. https://doi.org/10.1016/j.colcom.2014.07.001

Al Olama AA, Kote-Jarai Z, Berndt SI, Conti DV, Schumacher F, Han Y et al. A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. Nature Genetics. 2014 Sep 26;46(10):1103-1109. https://doi.org/10.1038/ng.3094

Praveenkumar R, Kim B, Choi E, Lee K, Cho S, Hyun JS et al. Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production. Bioprocess and Biosystems Engineering. 2014 Sep 12;37(10):2083-2094. https://doi.org/10.1007/s00449-014-1186-5

Sjögren E, Tammela TL, Lennernäs B, Taari K, Isotalo T, Malmsten LÅ et al. Pharmacokinetics of an injectable modified-release 2-hydroxyflutamide formulation in the human prostate gland using a semiphysiologically based biopharmaceutical model. Molecular Pharmaceutics. 2014 Sep 2;11(9):3097-3111. https://doi.org/10.1021/mp5002813

Tentzeris MM, Kim S, Lakafosis V, Lee H, Le T, Vyas R et al. Advanced Material-Based Sensing Structures. In Handbook of Biomedical Telemetry. Wiley-Blackwell. 2014. p. 633-689 https://doi.org/10.1002/9781118893715.ch23

Tentzeris MM, Vyas R, Wei W, Kawahara Y, Yang L, Georgakopoulos S et al. Power Issues in Biomedical Telemetry. In Handbook of Biomedical Telemetry. Wiley-Blackwell. 2014. p. 108-130 https://doi.org/10.1002/9781118893715.ch5

Nordenvall R, Bahmanyar S, Adami J, Mattila VM, Felländer-Tsai L. Cruciate ligament reconstruction and risk of knee osteoarthritis: The association between cruciate ligament injury and post-traumatic osteoarthritis. a population based nationwide study in Sweden, 1987-2009. PLoS ONE. 2014 Aug 22;9(8). e104681. https://doi.org/10.1371/journal.pone.0104681

Rantanen T, Udd M, Honkanen T, Miettinen P, Kärjä V, Rantanen L et al. Effect of Omeprazole Dose, Nonsteroidal Anti-inflammatory Agents, and Smoking on Repair Mechanisms in Acute Peptic Ulcer Bleeding. Digestive Diseases and Sciences. 2014 Aug 20;59(11):2666-2674. https://doi.org/10.1007/s10620-014-3242-z

Scaravilli M, Asero P, Tammela TL, Visakorpi T, Saramäki OR. Mapping of the chromosomal amplification 1p21-22 in bladder cancer. BMC RESEARCH NOTES. 2014 Aug 18;7(1). 547. https://doi.org/10.1186/1756-0500-7-547

Spencer CI, Baba S, Nakamura K, Hua EA, Sears MAF, Fu CC et al. Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia. Stem Cell Reports. 2014 Aug 12;3(2):269-281. https://doi.org/10.1016/j.stemcr.2014.06.003

Virman JP, Soini Y, Kujala P, Luukkaala T, Salminen T, Sunela K et al. Claudins as prognostic factors for renal cell cancer. Anticancer Research. 2014 Aug 1;34(8):4181-4188.

Kurppa K, Hytönen VP, Nakari-Setälä T, Kulomaa MS, Linder MB. Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces. Colloids and Surfaces B: Biointerfaces. 2014 Aug 1;120:102-109. https://doi.org/10.1016/j.colsurfb.2014.05.010

Kurppa KJ, Rokavec M, Sundvall M, Kellokumpu-Lehtinen PL, Joensuu H, Brauch H et al. ERBB4 promoter polymorphism is associated with poor distant disease-free survival in high-risk early breast cancer. PLoS ONE. 2014 Jul 18;9(7). e102388. https://doi.org/10.1371/journal.pone.0102388

Raitoharju E, Seppälä I, Oksala N, Lyytikäinen LP, Raitakari O, Viikari J et al. Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study. Molecular and Cellular Endocrinology. 2014 Jun 25;391(1-2):41-49. https://doi.org/10.1016/j.mce.2014.04.013

Tossavainen H, Kukkurainen S, Määttä JAE, Kähkönen N, Pihlajamaa T, Hytönen VP et al. Chimeric avidin - NMR structure and dynamics of a 56 kDa homotetrameric thermostable protein. PLoS ONE. 2014 Jun 24;9(6). e100564. https://doi.org/10.1371/journal.pone.0100564

Pluhařová E, Fischer HE, Mason PE, Jungwirth P. Hydration of the chloride ion in concentrated aqueous solutions using neutron scattering and molecular dynamics. Molecular Physics. 2014 May 19;112(9-10):1230-1240. https://doi.org/10.1080/00268976.2013.875231

Koskela JE, Liljeström V, Lim J, Simanek EE, Ras RHA, Priimagi A et al. Light-fuelled transport of large dendrimers and proteins. Journal of the American Chemical Society. 2014 May 14;136(19):6850-6853. https://doi.org/10.1021/ja502623m

Carlsson S, Roobol MJ, Schröder FH, Hugosson J, Auvinen A. RE: Prostate-specific antigen screening trials and prostate cancer deaths: The androgen deprivation connection. JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2014 May 14;106(5). dju079. https://doi.org/10.1093/jnci/dju079

Kokkola T, Suuronen T, Molnár F, Määttä J, Salminen A, Jarho EM et al. AROS has a context-dependent effect on SIRT1. FEBS Letters. 2014 May 2;588(9):1523-1528. https://doi.org/10.1016/j.febslet.2014.03.020

Auvinen A, Seppä K, Pasanen K, Kurttio P, Patama T, Pukkala E et al. Chernobyl fallout and cancer incidence in Finland 1988-2007. International Journal of Cancer. 2014 May 1;134(9):2253-2263. https://doi.org/10.1002/ijc.28554

Mäenpa J, Puistola U, Riska H, Sintonen H, Saarni O, Juvonen E et al. Impact of epoetin-beta on anemia and health-related quality of life in cancer patients: A prospective observational study using the generic 15D instrument. Anticancer Research. 2014 May 1;34(5):2325-2330.

Dehmer M, Emmert-Streib F, Shi Y. Interrelations of graph distance measures based on topological indices. PLoS ONE. 2014 Apr 23;9(4). e94985. https://doi.org/10.1371/journal.pone.0094985

Kristensen H, Haldrup C, Strand S, Mundbjerg K, Mortensen MM, Thorsen K et al. Hypermethylation of the GABRẼmiR-452̃miR-224 promoter in prostate cancer predicts biochemical recurrence after radical prostatectomy. Clinical Cancer Research. 2014 Apr 15;20(8):2169-2181. https://doi.org/10.1158/1078-0432.CCR-13-2642

Tripathi S, Dehmer M, Emmert-Streib F. NetBioV: An R package for visualizing large network data in biology and medicine. Bioinformatics. 2014 Apr 2;30(19):2834-2836. https://doi.org/10.1093/bioinformatics/btu384

Ciranna A, Pawar SS, Santala V, Karp M, van Niel EWJ. Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure. Microbial Cell Factories. 2014 Mar 28;13(1). 48. https://doi.org/10.1186/1475-2859-13-48

Santala S, Efimova E, Koskinen P, Karp MT, Santala V. Rewiring the wax ester production pathway of acinetobacter baylyi ADP1. ACS Synthetic Biology. 2014 Mar 21;3(3):145-151. https://doi.org/10.1021/sb4000788

Taskinen B, Airenne TT, Jänis J, Rahikainen R, Johnson MS, Kulomaa MS et al. A novel chimeric avidin with increased thermal stability using DNA shuffling. PLoS ONE. 2014 Mar 14;9(3). e92058. https://doi.org/10.1371/journal.pone.0092058

Laurila E, Vuorinen E, Savinainen K, Rauhala H, Kallioniemi A. KPNA7, a nuclear transport receptor, promotes malignant properties of pancreatic cancer cells in vitro. Experimental Cell Research. 2014 Mar 10;322(1):159-167. https://doi.org/10.1016/j.yexcr.2013.11.014

Mueller LAJ, Dehmer M, Emmert-Streib F. Network-based methods for computational diagnostics by means of R. In Computational Medicine: Tools and Challenges. Springer-Verlag Wien. 2014. p. 185-197 https://doi.org/10.1007/978-3-7091-0947-2_11

Penttinen H, Rautalin M, Roine R, Jahkola T, Kellokumpu-Lehtinen PL, Huovinen R et al. Quality of life of recently treated patients with breast cancer. Anticancer Research. 2014 Mar 1;34(3):1201-1206.

Teerlink CC, Thibodeau SN, McDonnell SK, Schaid DJ, Rinckleb A, Maier C et al. Association analysis of 9,560 prostate cancer cases from the International Consortium of Prostate Cancer Genetics confirms the role of reported prostate cancer associated SNPs for familial disease. HUMAN GENETICS. 2014 Mar;133(3):347-356. https://doi.org/10.1007/s00439-013-1384-2

Chen LS, Fann JCY, Chiu SYH, Yen AMF, Wahlfors T, Tammela TL et al. Assessing interactions of two loci (rs4242382 and rs10486567) in familial prostate cancer: Statistical evaluation of epistasis. PLoS ONE. 2014 Feb 25;9(2). e89508. https://doi.org/10.1371/journal.pone.0089508

Mikhailova A, Ilmarinen T, Uusitalo H, Skottman H. Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells. Stem Cell Reports. 2014 Feb 11;2(2):219-231. https://doi.org/10.1016/j.stemcr.2013.12.014

Planello AC, Ji J, Sharma V, Singhania R, Mbabaali F, Müller F et al. Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors. Cell Regeneration. 2014 Feb 7;3(1). 4.

Hosin AA, Prasad A, Viiri LE, Davies AH, Shalhoub J. MicroRNAs in atherosclerosis. Journal of Vascular Research. 2014 Feb 6;51(5):338-349. https://doi.org/10.1159/000368193

Rahmatallah Y, Emmert-Streib F, Glazko G. Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets. Bioinformatics. 2014 Feb 1;30(3):360-368. https://doi.org/10.1093/bioinformatics/btt687

Sorkio A, Hongisto H, Kaarniranta K, Uusitalo H, Juuti-Uusitalo K, Skottman H. Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating. Tissue Engineering Part A. 2014 Feb 1;20(3-4):622-634. https://doi.org/10.1089/ten.tea.2013.0049

Zhang D, Pekkanen-Mattila M, Shahsavani M, Falk A, Teixeira AI, Herland A. A 3D Alzheimer's disease culture model and the induction of P21-activated kinase mediated sensing in iPSC derived neurons. Biomaterials. 2014 Feb;35(5):1420-1428. https://doi.org/10.1016/j.biomaterials.2013.11.028

Rangl M, Leitner M, Riihimäki T, Lehtonen S, Hytönen VP, Gruber HJ et al. Investigating the binding behaviour of two avidin-based testosterone binders using molecular recognition force spectroscopy. Journal of Molecular Recognition. 2014 Feb;27(2):92-97. https://doi.org/10.1002/jmr.2337

Emmert-Streib F, Zhang SD, Hamilton P. Dry computational approaches for wet medical problems. Journal of Translational Medicine. 2014 Jan 25;12(1). 26. https://doi.org/10.1186/1479-5876-12-26

Ji J, Sharma V, Qi S, Guarch ME, Zhao P, Luo Z et al. Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. Stem Cell Reports. 2014 Jan 14;2(1):44-51. https://doi.org/10.1016/j.stemcr.2013.11.004

Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y et al. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Research. 2014 Jan 1;42(D1). https://doi.org/10.1093/nar/gkt1140

Oksala NKJ, Ekmekçi FG, Özsoy E, Kirankaya Ş, Kokkola T, Emecen G et al. Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress. REDOX BIOLOGY. 2014 Jan 1;3:25-28. https://doi.org/10.1016/j.redox.2014.10.003

Schrecengost RS, Dean JL, Goodwin JF, Schiewer MJ, Urban MW, Stanek TJ et al. USP22 regulates oncogenic signaling pathways to drive lethal cancer progression. Cancer Research. 2014 Jan 1;74(1):272-286. https://doi.org/10.1158/0008-5472.CAN-13-1954

Maria Cherian R, Gaunitz S, Nilsson A, Liu J, Karlsson NG, Holgersson J. Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins. GLYCOBIOLOGY. 2014 Jan;24(1):26-38. https://doi.org/10.1093/glycob/cwt086

Traylor M, Mäkelä KM, Kilarski LL, Holliday EG, Devan WJ, Nalls MA et al. A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach. PLOS GENETICS. 2014;10(7). e1004469. https://doi.org/10.1371/journal.pgen.1004469

Huang Q, Whitington T, Gao P, Lindberg JF, Yang Y, Sun J et al. A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding. Nature Genetics. 2014;46(2):126-135. https://doi.org/10.1038/ng.2862

Kuismanen K, Sartoneva R, Haimi S, Mannerström B, Tomás E, Miettinen S et al. Autologous adipose stem cells in treatment of female stress urinary incontinence: Results of a pilot study. Stem Cells Translational Medicine. 2014;3(8):936-941. https://doi.org/10.5966/sctm.2013-0197

Zane L, Sharma V, Misteli T. Common features of chromatin in aging and cancer: Cause or coincidence? TRENDS IN CELL BIOLOGY. 2014;24(11):686-694. https://doi.org/10.1016/j.tcb.2014.07.001

Křížek T, Kubíčková A, Hladílková J, Coufal P, Heyda J, Jungwirth P. Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts. ELECTROPHORESIS. 2014;35(5):617-624. https://doi.org/10.1002/elps.201300544

Emmert-Streib F. Enhancing our understanding of ways to analyze metagenomes. Frontiers in Genetics. 2014;5(APR). Article 108. https://doi.org/10.3389/fgene.2014.00108

Kannan K, Vijayan D, MubarakAli D, Praveenkumar R, Ahamed AP, Thajuddin N. Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy. Biotechnology. 2014;13(2):46-53. https://doi.org/10.3923/biotech.2014.46.53

Emmert-Streib F, de Matos Simoes R, Glazko G, McDade S, Haibe-Kains B, Holzinger A et al. Functional and genetic analysis of the colon cancer network. BMC Bioinformatics. 2014;15(Suppl 6). S6.

Giraudeau C, Moussaron A, Stallivieri A, Mordon S, Frochot C. Indocyanine green: Photosensitizer or chromophore? Still a debate. CURRENT MEDICINAL CHEMISTRY. 2014;21(16):1871-1897.

Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G et al. Inference and validation of predictive gene networks from biomedical literature and gene expression data. Genomics. 2014;103(5-6):329-336. https://doi.org/10.1016/j.ygeno.2014.03.004

Näreoja T, Ebner A, Gruber HJ, Taskinen B, Kienberger F, Hänninen PE et al. Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay. Analytical and Bioanalytical Chemistry. 2014;406(2):493-503. https://doi.org/10.1007/s00216-013-7474-0

Kannisto M, Aho T, Karp M, Santala V. Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. Applied and Environmental Microbiology. 2014;80(22):7021-7027. https://doi.org/10.1128/AEM.01837-14

Guglielmetti S, Zanoni I, Balzaretti S, Miriani M, Taverniti V, de Noni I et al. Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. Applied and Environmental Microbiology. 2014;80(17):5170-5177. https://doi.org/10.1128/AEM.00761-14

Akimova AV, Grin MA, Golovina GV, Kokrashvili TA, Vinogradov AM, Mironov AF et al. Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage. DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 2014;454(1):17-20. https://doi.org/10.1134/S1607672914010062

Vuorenpää H, Ikonen L, Kujala K, Huttala O, Sarkanen JR, Ylikomi T et al. Novel in vitro cardiovascular constructs composed of vascular-like networks and cardiomyocytes. IN VITRO CELLULAR AND DEVELOPMENTAL BIOLOGY: ANIMAL. 2014;50(4):275-286. https://doi.org/10.1007/s11626-013-9703-4

Fitzpatrick JM, Bellmunt J, Fizazi K, Heidenreich A, Sternberg CN, Tombal B et al. Optimal management of metastatic castration-resistant prostate cancer: Highlights from a European Expert Consensus Panel. EUROPEAN JOURNAL OF CANCER. 2014;50(9):1617-1627. https://doi.org/10.1016/j.ejca.2014.03.010

Ju YSE, Alexandrov LB, Gerstung M, Martincorena I, Nik-Zainal S, Ramakrishna M et al. Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer. eLIFE. 2014;3. https://doi.org/10.7554/eLife.02935

Veitonmäki T, Murtola TJ, Määttänen L, Taari K, Stenman UH, Tammela TL et al. Prostate cancer risk and nonsteroidal antiinflammatory drug use in the Finnish prostate cancer screening trial. British Journal of Cancer. 2014;111(7):1421-1431. https://doi.org/10.1038/bjc.2014.381

Hakala T, Sand J, Kellokumpu-Lehtinen PL, Huhtala H, Leinonen R, Kholová I. Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers. European Journal of Clinical Investigation. 2014;44(9):825-832. https://doi.org/10.1111/eci.12301

Olsen C, Bontempi G, Emmert-Streib F, Quackenbush J, Haibe-Kains B. Relevance of different prior knowledge sources for inferring gene interaction networks. Frontiers in Genetics. 2014;5(JUN). Article 177. https://doi.org/10.3389/fgene.2014.00177

Emmert-Streib F, Zhang SD, Hamilton P. Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. Genomics Data. 2014;2:37-39. https://doi.org/10.1016/j.gdata.2013.12.001

Pinon P, Pärssinen J, Vazquez P, Bachmann M, Rahikainen R, Jacquier MC et al. Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing. Journal of Cell Biology. 2014;205(2):265-281. https://doi.org/10.1083/jcb.201308136

Guglielmetti S, Balzaretti S, Taverniti V, Miriani M, Milani C, Scarafoni A et al. TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. Applied and Environmental Microbiology. 2014;80(17):5161-5169. https://doi.org/10.1128/AEM.01413-14

Emmert-Streib F, Simoes RDM, Mullan P, Haibe-Kains B, Dehmer M. The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks. Frontiers in Genetics. 2014;5(FEB). Article 15. https://doi.org/10.3389/fgene.2014.00015

Emmert-Streib F, Dehmer M, Haibe-Kains B. Untangling statistical and biological models to understand network inference: The need for a genomics network ontology. Frontiers in Genetics. 2014;5(AUG). article 229. https://doi.org/10.3389/fgene.2014.00299

Dehmer M, Emmert-Streib F, Tripathi S. Large-scale evaluation of molecular descriptors by means of clustering. PLoS ONE. 2013 Dec 31;8(12). e83956. https://doi.org/10.1371/journal.pone.0083956

Häkkinen MR, Roine A, Auriola S, Tuokko A, Veskimäe E, Keinänen TA et al. Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS. JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2013 Dec 15;941:81-89. https://doi.org/10.1016/j.jchromb.2013.10.009

Altay G, Kurt Z, Dehmer M, Emmert-Streib F. Netmes: Assessing gene network inference algorithms by network-based measures. Evolutionary Bioinformatics. 2013 Dec 7;10. https://doi.org/10.4137/EBO.S13481

Anantharajan J, Koski MK, Kursula P, Hieta R, Bergmann U, Myllyharju J et al. The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase. Structure. 2013 Dec 3;21(12):2107-2118. https://doi.org/10.1016/j.str.2013.09.005

Oksala N, Pärssinen J, Seppälä I, Raitoharju E, Ivana K, Hernesniemi J et al. Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS). Circulation: Cardiovascular Genetics. 2013 Dec;6(6):579-587. https://doi.org/10.1161/CIRCGENETICS.113.000141

Raitoharju E, Oksala N, Lehtimäki T. MicroRNAs in the atherosclerotic plaque. Clinical Chemistry. 2013 Dec;59(12):1708-1721. https://doi.org/10.1373/clinchem.2013.204917

Laurila EM, Kallioniemi A. The diverse role of miR-31 in regulating cancer associated phenotypes. Genes Chromosomes and Cancer. 2013 Dec;52(12):1103-1113. https://doi.org/10.1002/gcc.22107

Poojari C, Xiao D, Batista VS, Strodel B. Membrane permeation induced by aggregates of human islet amyloid polypeptides. Biophysical Journal. 2013 Nov 19;105(10):2323-2332. https://doi.org/10.1016/j.bpj.2013.09.045

Khanna A, Kauko O, Böckelman C, Laine A, Schreck I, Partanen JI et al. Chk1 targeting reactivates PP2A tumor suppressor activity in cancer cells. Cancer Research. 2013 Nov 15;73(22):6757-6769. https://doi.org/10.1158/0008-5472.CAN-13-1002

Poojari C, Strodel B. Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations. PLoS ONE. 2013 Nov 7;8(11). e78399. https://doi.org/10.1371/journal.pone.0078399

Kellokumpu-Lehtinen PL, Tuunanen T, Kautio AL, Lehtinen I, Tanner M. Bi-weekly paclitaxel and capecitabine as a second- Or third-line treatment for advanced breast cancer: A pilot study. Anticancer Research. 2013 Nov;33(11):4941-4945.

Taskinen B, Zmurko J, Ojanen M, Kukkurainen S, Parthiban M, Määttä JAE et al. Zebavidin - An Avidin-Like Protein from Zebrafish. PLoS ONE. 2013 Oct 24;8(10). e77207. https://doi.org/10.1371/journal.pone.0077207

Pollheimer P, Taskinen B, Scherfler A, Gusenkov S, Creus M, Wiesauer P et al. Reversible biofunctionalization of surfaces with a switchable mutant of avidin. Bioconjugate Chemistry. 2013 Oct 16;24(10):1656-1668. https://doi.org/10.1021/bc400087e

Kyllönen L, Haimi S, Säkkinen J, Kuokkanen H, Mannerström B, Sándor GKB et al. Exogenously added BMP-6, BMP-7 and VEGF may not enhance the osteogenic differentiation of human adipose stem cells. GROWTH FACTORS. 2013 Oct;31(5):141-153. https://doi.org/10.3109/08977194.2013.817404

Kurttio P, Seppä K, Pasanen K, Patama T, Auvinen A, Pukkala E et al. Fallout from the Chernobyl accident and overall cancer incidence in Finland. CANCER EPIDEMIOLOGY. 2013 Oct;37(5):585-592. https://doi.org/10.1016/j.canep.2013.05.006

Nurminen R, Lehtonen R, Auvinen A, Tammela TLJ, Wahlfors T, Schleutker J. Fine mapping of 11q13.5 identifies regions associated with prostate cancer and prostate cancer death. EUROPEAN JOURNAL OF CANCER. 2013 Oct;49(15):3335-3343. https://doi.org/10.1016/j.ejca.2013.06.006

Kleber ME, Seppälä I, Pilz S, Hoffmann MM, Tomaschitz A, Oksala N et al. Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: The atheroremo consortium. Circulation: Cardiovascular Genetics. 2013 Oct;6(5):505-513. https://doi.org/10.1161/CIRCGENETICS.113.000108

Ampuja M, Jokimäki R, Juuti-Uusitalo K, Rodriguez-Martinez A, Alarmo EL, Kallioniemi A. BMP4 inhibits the proliferation of breast cancer cells and induces an MMP-dependent migratory phenotype in MDA-MB-231 cells in 3D environment. BMC Cancer. 2013 Sep 22;13. 429. https://doi.org/10.1186/1471-2407-13-429

Lindström MS, Latonen L. The nucleolus as a stress response organelle. In Proteins of the Nucleolus: Regulation, Translocation, & Biomedical Functions. Vol. 9789400758186. Springer Netherlands. 2013. p. 251-273 https://doi.org/10.1007/978-94-007-5818-6_11

Högnäs G, Hämälistö S, Rilla K, Laine JO, Vilkki V, Murumägi A et al. Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation. Carcinogenesis. 2013 Sep;34(9):2000-2009. https://doi.org/10.1093/carcin/bgt171

Bozzini G, Colin P, Betrouni N, Maurage CA, Leroy X, Simonin S et al. Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer: A preclinical study on the dunning R3327-AT2 rat tumor model. PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 2013 Sep;10(3):296-303. https://doi.org/10.1016/j.pdpdt.2013.01.003

Rahu K, Hakulinen T, Smailyte G, Stengrevics A, Auvinen A, Inskip PD et al. Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007. EUROPEAN JOURNAL OF CANCER. 2013 Sep;49(13):2926-2933. https://doi.org/10.1016/j.ejca.2013.04.014

Nickerson ML, Im KM, Misner KJ, Tan W, Lou H, Gold B et al. Somatic alterations contributing to metastasis of a castration-resistant prostate cancer. HUMAN MUTATION. 2013 Sep;34(9):1231-1241. https://doi.org/10.1002/humu.22346

Dixit D, Ghildiyal R, Anto NP, Ghosh S, Sharma V, Sen E. Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner. Cancer Letters. 2013 Aug 19;336(2):347-358. https://doi.org/10.1016/j.canlet.2013.03.025

Stirnemann G, Wernersson E, Jungwirth P, Laage D. Mechanisms of acceleration and retardation of water dynamics by ions. Journal of the American Chemical Society. 2013 Aug 14;135(32):11824-11831. https://doi.org/10.1021/ja405201s

Chen J, Xi J, Tian Y, Bova GS, Zhang H. Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. Proteomics. 2013 Aug;13(15):2268-2277. https://doi.org/10.1002/pmic.201200541

Venojärvi M, Oksala N, Kinnunen S, Atalay M. Stress Proteins and Heat Shock Proteins: Role in Muscle Building and Sports Nutrition. In Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength. Elsevier Inc. 2013. p. 229-235 https://doi.org/10.1016/B978-0-12-396454-0.00023-0

Loi S, Michiels S, Lambrechts D, Fumagalli D, Claes B, Kellokumpu-Lehtinen PL et al. Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer. JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2013 Jul 3;105(13):960-967. https://doi.org/10.1093/jnci/djt121

Diban N, Haimi S, Bolhuis-Versteeg L, Teixeira S, Miettinen S, Poot A et al. Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering. Journal of Membrane Science. 2013 Jul 1;438:29-37. https://doi.org/10.1016/j.memsci.2013.03.024

Liu W, Xie CC, Thomas CY, Kim ST, Lindberg J, Egevad L et al. Genetic markers associated with early cancer-specific mortality following prostatectomy. Cancer. 2013 Jul 1;119(13):2405-2412. https://doi.org/10.1002/cncr.27954

Kosola J, Vaara JP, Ahotupa M, Kyröläinen H, Santtila M, Oksala N et al. Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men. METABOLISM: CLINICAL AND EXPERIMENTAL. 2013 Jul;62(7):992-999. https://doi.org/10.1016/j.metabol.2013.01.013

Leppiniemi J, Meir A, Kahkonen N, Kukkurainen S, Maatta JA, Ojanen M et al. The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins. PROTEIN SCIENCE. 2013 Jul;22(7):980-994. https://doi.org/10.1002/pro.2281

Sharma V, Misteli T. Non-coding RNAs in DNA damage and repair. FEBS Letters. 2013 Jun 27;587(13):1832-1839. https://doi.org/10.1016/j.febslet.2013.05.006

Kiiski H, Äänismaa R, Tenhunen J, Hagman S, Ylä-Outinen L, Aho A et al. Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks. Biology Open. 2013 Jun 15;2(6):605-612. https://doi.org/10.1242/bio.20134648

Ryan Geyer R, Musa-Aziz R, Enkavi G, Mahinthichaichan P, Tajkhorshid E, Boron WF. Movement of NH3 through the human urea transporter B: A new gas channel. AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY. 2013 Jun 15;304(12):1447-1457. https://doi.org/10.1152/ajprenal.00609.2012

Mordon SR, Vuylsteke ME, Mahieu P, Betrouni N. Endovenous laser treatment of the great saphenous vein: Measurement of the pullback speed of the fiber by magnetic tracking. IRBM. 2013 Jun;34(3):252-256. https://doi.org/10.1016/j.irbm.2012.10.004

Kellokumpu-Lehtinen P, Tuunanen T, Asola R, Elomaa L, Heikkinen M, Kokko R et al. Weekly paclitaxel-An effective treatment for advanced breast cancer. Anticancer Research. 2013 Jun;33(6):2623-2628.

Kilpeläinen TP, Tammela TL, Malila N, Hakama M, Santti H, Määttänen L et al. Prostate cancer mortality in the finnish randomized screening trial. JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2013 May 15;105(10):719-725. https://doi.org/10.1093/jnci/djt038

Matos Simoes RD, Dehmer M, Emmert-Streib F. Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information. BMC Genomics. 2013 May 11;14(1). 324. https://doi.org/10.1186/1471-2164-14-324

Emmert-Streib F, De Matos Simoes R, Tripathi S, Dehmer M. Overview of Public Cancer Databases, Resources, and Visualization Tools. In Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Vol. 3. Wiley-VCH. 2013. p. 27-40 https://doi.org/10.1002/9783527665471.ch2

Emmert-Streib F, (ed.), Dehmer M, (ed.). Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH, 2013. 292 p. https://doi.org/10.1002/9783527665471

Tripathi S, Glazko GV, Emmert-Streib F. Ensuring the statistical soundness of competitive gene set approaches: Gene filtering and genome-scale coverage are essential. Nucleic Acids Research. 2013 Apr;41(7). https://doi.org/10.1093/nar/gkt054

Simpson CL, Cropp CD, Wahlfors T, George A, Jones MS, Harper U et al. Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis. EUROPEAN JOURNAL OF HUMAN GENETICS. 2013 Apr;21(4):437-443. https://doi.org/10.1038/ejhg.2012.185

Eeles RA, Olama AAA, Benlloch S, Saunders EJ, Leongamornlert DA, Tymrakiewicz M et al. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Nature Genetics. 2013 Apr;45(4):385-391. https://doi.org/10.1038/ng.2560

Elme A, Utriainen M, Kellokumpu-Lehtinen P, Palva T, Luoto R, Nikander R et al. Obesity and physical inactivity are related to impaired physical health of breast cancer survivors. Anticancer Research. 2013 Apr;33(4):1595-1602.

Tossavainen H, Helppolainen SH, Määttä JAE, Pihlajamaa T, Hytönen VP, Kulomaa MS et al. Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms. BIOMOLECULAR NMR ASSIGNMENTS. 2013 Apr;7(1):35-38. https://doi.org/10.1007/s12104-012-9371-4

Elamin E, Masclee A, Juuti-Uusitalo K, van IJzendoorn S, Troost F, Pieters HJ et al. Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model. PLoS ONE. 2013 Mar 19;8(3). e58561. https://doi.org/10.1371/journal.pone.0058561

Bruchmann A, Roller C, Walther TV, Schäfer G, Lehmusvaara S, Visakorpi T et al. Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis. BMC Cancer. 2013 Mar 1;13. 96. https://doi.org/10.1186/1471-2407-13-96

Veitonmäki T, Tammela TLJ, Auvinen A, Murtola TJ. Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level. EUROPEAN JOURNAL OF CANCER. 2013 Mar;49(4):938-945. https://doi.org/10.1016/j.ejca.2012.09.030

Emmert-Streib F. Structural Properties and Complexity of a New Network Class: Collatz Step Graphs. PLoS ONE. 2013 Feb 19;8(2). e56461. https://doi.org/10.1371/journal.pone.0056461

Betrouni N, Nevoux P, Leroux B, Colin P, Puech P, Mordon S. An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning. Medical Physics. 2013 Feb;40(2). 022701. https://doi.org/10.1118/1.4788673

Poojari C, Kukol A, Strodel B. How the amyloid-β peptide and membranes affect each other: An extensive simulation study. Biochimica et Biophysica Acta: Biomembranes. 2013 Feb;1828(2):327-339. https://doi.org/10.1016/j.bbamem.2012.09.001

Betrouni N, Colin P, Bozzini G, Mordon S. Image-guided laser therapies for prostate cancer. IRBM. 2013 Feb;34(1):28-32. https://doi.org/10.1016/j.irbm.2012.12.006

Shaikh SA, Li J, Enkavi G, Wen PC, Huang Z, Tajkhorshid E. Visualizing functional motions of membrane transporters with molecular dynamics simulations. Biochemistry. 2013 Jan 29;52(4):569-587. https://doi.org/10.1021/bi301086x

Blake JA, Dolan M, Drabkin H, Hill DP, Ni L, Sitnikov D et al. Gene ontology annotations and resources. Nucleic Acids Research. 2013 Jan 1;41(D1). https://doi.org/10.1093/nar/gks1050

Apweiler R, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E et al. Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Research. 2013 Jan 1;41(D1). https://doi.org/10.1093/nar/gks1068

Al Olama AA, Kote-Jarai Z, Schumacher FR, Wiklund F, Berndt SI, Benlloch S et al. A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. HUMAN MOLECULAR GENETICS. 2013 Jan;22(2):408-415. dds425. https://doi.org/10.1093/hmg/dds425

Xu J, Lange EM, Lu L, Zheng SL, Wang Z, Thibodeau SN et al. HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG). HUMAN GENETICS. 2013 Jan;132(1):5-14. https://doi.org/10.1007/s00439-012-1229-4

Rauhala HE, Teppo S, Niemelä S, Kallioniemi A. Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration. Anticancer Research. 2013 Jan;33(1):45-52.

Ikonen L, Kerkelä E, Metselaar G, Stuart MCA, De Jong MR, Aalto-Setälä K. 2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture. BioMed Research International. 2013;2013. 285678. https://doi.org/10.1155/2013/285678

Simoes RDM, Dehmer M, Emmert-Streib F. B-cell lymphoma gene regulatory networks: Biological consistency among inference methods. Frontiers in Genetics. 2013;4(DEC). 00281. https://doi.org/10.3389/fgene.2013.00281

Rantanen T, Kauttu T, Åkerla J, Honkanen T, Krogerus L, Salo J et al. CIP2A expression and prognostic role in patients with esophageal adenocarcinoma. MEDICAL ONCOLOGY. 2013;30(3). 684. https://doi.org/10.1007/s12032-013-0684-7

Toivonen S, Ojala M, Hyysalo A, Ilmarinen T, Rajala K, Pekkanen-Mattila M et al. Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines. Stem Cells Translational Medicine. 2013;2(2):83-93. https://doi.org/10.5966/sctm.2012-0047

Kong L, Aho KL, Granberg K, Roos C, Autio R. DBComposer: An R package for integrative analysis and management of gene expression microarray data. In 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. p. 92-93. 6735944 https://doi.org/10.1109/GENSIPS.2013.6735944

Patrikoski M, Juntunen M, Boucher S, Campbell A, Vemuri MC, Mannerström B et al. Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells. STEM CELL RESEARCH & THERAPY. 2013;4(2). 27. https://doi.org/10.1186/scrt175

Kyllönen L, Haimi S, Mannerström B, Huhtala H, Rajala KM, Skottman H et al. Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro. STEM CELL RESEARCH & THERAPY. 2013;4(1). 17. https://doi.org/10.1186/scrt165

Chen J, Eshghi ST, Bova GS, Li QK, Li X, Zhang H. Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens. CLINICAL PROTEOMICS. 2013;10(1). 18. https://doi.org/10.1186/1559-0275-10-18

Alimi NA, Bink MCAM, Dieleman JA, Nicolaï M, Wubs M, Heuvelink E et al. Genetic and QTL analyses of yield and a set of physiological traits in pepper. EUPHYTICA. 2013;190(2):181-201. https://doi.org/10.1007/s10681-012-0767-0

Diban N, Haimi S, Bolhuis-Versteeg L, Teixeira S, Miettinen S, Poot A et al. Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. Acta Biomaterialia. 2013;9(5):6450-6458. https://doi.org/10.1016/j.actbio.2013.01.005

Emmert-Streib F. Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors. PeerJ. 2013;2013(1). e10. https://doi.org/10.7717/peerj.10

Ylilauri M, Mattila E, Nurminen EM, Käpylä J, Niinivehmas SP, Määttä JA et al. Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone. Biochimica et biophysica acta: proteins and proteomics. 2013;1834(10):1988-1997. https://doi.org/10.1016/j.bbapap.2013.07.001

Magarkar A, Stepniewski M, Karakas E, Rog T, Yliperttula M, Urtti A et al. Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream. In Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2. 2013. p. 576-578

Jayakrishnan R, Mathew A, Uutela A, Auvinen A, Sebastian P. Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India. ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 2013;14(5):2891-2896. https://doi.org/10.7314/APJCP.2013.14.5.2891

Rodriguez-Canales J, Hanson JC, Hipp JD, Balis UJ, Tangrea MA, Emmert-Buck MR et al. Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications. In Pancreatic Cancer: Methods and Protocols. Vol. 980. HUMANA PRESS INC. 2013. p. 61-120. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-287-2_5

Emmert-Streib F. Personalized medicine: Has it started yet? A reconstruction of the early history. Frontiers in Genetics. 2013;3(JAN). Article 313. https://doi.org/10.3389/fgene.2012.00313

Iosifidis A, Tefas A, Pitas I. Person identification from actions based on Artificial Neural Networks. In IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 2013. p. 7-13 https://doi.org/10.1109/CIBIM.2013.6607907

Iosifidis A, Tefas A, Pitas I. Person identification from actions based on dynemes and discriminant learning. In 2013 International Workshop on Biometrics and Forensics, IWBF 2013. 2013 https://doi.org/10.1109/IWBF.2013.6547320

Lahtinen K, Maydannik P, Kääriäinen T, Seppänen T, Cameron DC, Johansson P et al. Roll-to-roll atomic layer deposition for flexible substrates. In TAPPI International Conference on Nanotechnology 2013. TAPPI Press. 2013. p. 726-739

Jayakrishnan R, Uutela A, Mathew A, Auvinen A, Mathew PS, Sebastian P. Smoking cessation intervention in Rural Kerala, India: Findings of a randomised controlled trial. ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 2013;14(11):6797-6802. https://doi.org/10.7314/APJCP.2013.14.11.6797

Liimatainen V, Sariola V, Zhou Q. Undercut edges for robust capillary self-alignment in hybrid microassembly. In 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. 2013. p. 1088-1091. 6559911 https://doi.org/10.1109/NEMS.2013.6559911

Stepien M, Chinga-Carrasco G, Saarinen JJ, Teisala H, Tuominen M, Aromaa M et al. Wear resistance of nanoparticle coatings on paperboard. In TAPPI International Conference on Nanotechnology 2013. TAPPI Press. 2013. p. 821-829

Reid CN, Stevenson M, Abogunrin F, Ruddock MW, Emmert-Streib F, Lamont JV et al. Standardization of Diagnostic Biomarker Concentrations in Urine: The Hematuria Caveat. PLoS ONE. 2012 Dec 31;7(12). e53354. https://doi.org/10.1371/journal.pone.0053354

Huuskonen A, Lappalainen J, Oksala N, Santtila M, Häkkinen K, Kyröläinen H et al. Aerobic Fitness Does Not Modify the Effect of FTO Variation on Body Composition Traits. PLoS ONE. 2012 Dec 17;7(12). e51635. https://doi.org/10.1371/journal.pone.0051635

Pukkala E, Helminen M, Haldorsen T, Hammar N, Kojo K, Linnersjö A et al. Cancer incidence among Nordic airline cabin crew. International Journal of Cancer. 2012 Dec 15;131(12):2886-2897. https://doi.org/10.1002/ijc.27551

Emmert-Streib F, Tripathi S, Matos Simoes RD. Harnessing the complexity of gene expression data from cancer: From single gene to structural pathway methods. Biology Direct. 2012 Dec 10;7. 44. https://doi.org/10.1186/1745-6150-7-44

Rahmatallah Y, Emmert-Streib F, Glazko G. Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses. Bioinformatics. 2012 Dec;28(23):3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Lisitsyna ES, Durandin NA, Ivanov AA, Streltsov SA, Susova OY, Shtil AA et al. Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide. MOLECULAR BIOLOGY. 2012 Nov;46(6):823-827. https://doi.org/10.1134/S0026893312060131

Ojala M, Rajala K, Pekkanen-Mattila M, Miettinen M, Huhtala H, Aalto-Setälä K. Culture Conditions Affect Cardiac Differentiation Potential of Human Pluripotent Stem Cells. PLoS ONE. 2012 Oct 31;7(10). e48659. https://doi.org/10.1371/journal.pone.0048659

Saeger J, Hytönen VP, Klotzsch E, Vogel V. GFP's Mechanical Intermediate States. PLoS ONE. 2012 Oct 31;7(10). e46962. https://doi.org/10.1371/journal.pone.0046962

Jurkiewicz P, Olzyńska A, Cwiklik L, Conte E, Jungwirth P, Megli FM et al. Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations. Biochimica et Biophysica Acta: Biomembranes. 2012 Oct;1818(10):2388-2402. https://doi.org/10.1016/j.bbamem.2012.05.020

Wu GHM, Auvinen A, Määttänen L, Tammela TLJ, Stenman UH, Hakama M et al. Number of screens for overdetection as an indicator of absolute risk of overdiagnosis in prostate cancer screening. International Journal of Cancer. 2012 Sep 15;131(6):1367-1375. https://doi.org/10.1002/ijc.27340

Smith MR, Saad F, Egerdie B, Sieber PR, Tammela TLJ, Ke C et al. Sarcopenia during androgen-deprivation therapy for prostate cancer. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2012 Sep 10;30(26):3271-3276. https://doi.org/10.1200/JCO.2011.38.8850

Aavikko M, Li SP, Saarinen S, Alhopuro P, Kaasinen E, Morgunova E et al. Loss of SUFU function in familial multiple meningioma. AMERICAN JOURNAL OF HUMAN GENETICS. 2012 Sep 7;91(3):520-526. https://doi.org/10.1016/j.ajhg.2012.07.015

Tammela TLJ. Endocrine prevention and treatment of prostate cancer. Molecular and Cellular Endocrinology. 2012 Sep 5;360(1-2):59-67. https://doi.org/10.1016/j.mce.2012.03.002

Kujala K, Paavola J, Lahti A, Larsson K, Pekkanen-Mattila M, Viitasalo M et al. Cell Model of Catecholaminergic Polymorphic Ventricular Tachycardia Reveals Early and Delayed Afterdepolarizations. PLoS ONE. 2012 Sep 4;7(9). e44660. https://doi.org/10.1371/journal.pone.0044660

Saarto T, Penttinen HM, Sievänen H, Kellokumpu-Lehtinen PL, Hakamies-Blomqvist L, Nikander R et al. Effectiveness of a 12-month exercise program on physical performance and quality of life of breast cancer survivors. Anticancer Research. 2012 Sep;32(9):3875-3884.

Nikander R, Sievänen H, Ojala K, Kellokumpu-Lehtinen PL, Palva T, Blomqvist C et al. Effect of exercise on bone structural traits, physical performance and body composition in breast cancer patients - A 12-month RCT. Journal of Musculoskeletal and Neuronal Interactions. 2012 Sep;12(3):127-135.

Bozzini G, Colin P, Betrouni N, Nevoux P, Ouzzane A, Puech P et al. Photodynamic therapy in urology: What can we do now and where are we heading? PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 2012 Sep;9(3):261-273. https://doi.org/10.1016/j.pdpdt.2012.01.005

Egerdie RB, Saad F, Smith MR, Tammela TLJ, Heracek J, Sieber P et al. Responder analysis of the effects of denosumab on bone mineral density in men receiving androgen deprivation therapy for prostate cancer. PROSTATE CANCER AND PROSTATIC DISEASES. 2012 Sep;15(3):308-312. https://doi.org/10.1038/pcan.2012.18

Kellokumpu-Lehtinen PL, Hjälm-Eriksson M, Thellenberg-Karlsson C, Åström L, Franzen L, Marttila T et al. Toxicity in patients receiving adjuvant docetaxel hormonal treatment after radical radiotherapy for intermediate or high-risk prostate cancer: A preplanned safety report of the SPCG-13 trial. PROSTATE CANCER AND PROSTATIC DISEASES. 2012 Sep;15(3):303-307. https://doi.org/10.1038/pcan.2012.13

Liu W, Lindberg J, Sui G, Luo J, Egevad L, Li T et al. Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer. Oncogene. 2012 Aug 30;31(35):3939-3948. https://doi.org/10.1038/onc.2011.554

Högnäs G, Tuomi S, Veltel S, Mattila E, Murumägi A, Edgren H et al. Cytokinesis failure due to derailed integrin traffic induces aneuploidy and oncogenic transformation in vitro and in vivo. Oncogene. 2012 Aug 2;31(31):3597-3606. https://doi.org/10.1038/onc.2011.527

Hervonen P, Tulijoki T, Kellokumpu-Lehtinen P. No additional benefit of adding ifosfamide to docetaxel in castration-resistant metastatic prostate cancer. Anticancer Research. 2012 Aug;32(8):3305-3310.

Inouye M, Ripatti S, Kettunen J, Lyytikäinen LP, Oksala N, Laurila PP et al. Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis. PLOS GENETICS. 2012 Aug;8(8). e1002907. https://doi.org/10.1371/journal.pgen.1002907

Jin G, Lu L, Cooney KA, Ray AM, Zuhlke KA, Lange EM et al. Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis: Evidence from the International Consortium for Prostate Cancer Genetics (ICPCG). HUMAN GENETICS. 2012 Jul;131(7):1095-1103. https://doi.org/10.1007/s00439-011-1136-0

Murtola TJ, Syvälä H, Pennanen P, Bläuer M, Solakivi T, Ylikomi T et al. The importance of LDL and Cholesterol metabolism for prostate epithelial cell growth. PLoS ONE. 2012 Jun 27;7(6). e39445. https://doi.org/10.1371/journal.pone.0039445

Rembert KB, Paterová J, Heyda J, Hilty C, Jungwirth P, Cremer PS. Molecular mechanisms of ion-specific effects on proteins. Journal of the American Chemical Society. 2012 Jun 20;134(24):10039-10046. https://doi.org/10.1021/ja301297g

Bailey-Wilson JE, Childs EJ, Cropp CD, Schaid DJ, Xu J, Camp NJ et al. Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families. BMC MEDICAL GENETICS. 2012 Jun 19;13. 46. https://doi.org/10.1186/1471-2350-13-46