Musa, A., Tripathi, S., Dehmer, M., & Emmert-Streib, F. (2019). L1000 viewer: A search engine and Web interface for the LINCS data repository. Frontiers in Genetics, 10(JUN), [557].

Moore, D., Simoes, R. D. M., Dehmer, M., & Emmert-Streib, F. (2019). Prostate cancer gene regulatory network inferred from RNA-seq data. CURRENT GENOMICS, 20(1), 38-48.

Gumulya, Y., Boxall, N. J., Khaleque, H. N., Santala, V., Carlson, R. P., & Kaksonen, A. H. (2018). In a quest for engineering acidophiles for biomining applications: Challenges and opportunities. Genes, 9(2), [116].

Emmert-Streib, F., Dehmer, M., & Yli-Harja, O. (2017). Lessons from the human genome project: Modesty, honesty, and realism. Frontiers in Genetics, 8(NOV), [184].

Emmert-Streib, F., Dehmer, M., & Yli-Harja, O. (2016). Against dataism and for data sharing of big biomedical and clinical data with research parasites. Frontiers in Genetics, 7(AUG), [154].

Emmert-Streib, F., Tuomisto, L., & Yli-Harja, O. (2016). The need for formally defining "modern medicine" by means of experimental design. Frontiers in Genetics, 7(APR), [60].

Al Olama, A. A., Dadaev, T., Hazelett, D. J., Li, Q., Leongamornlert, D., Saunders, E. J., ... Kote-Jarai, Z. (2015). Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans. HUMAN MOLECULAR GENETICS, 24(19), 5589-5602. [ddv203].

Turpeinen, H., Seppälä, I., Lyytikäinen, L. P., Raitoharju, E., Hutri-Kähönen, N., Levula, M., ... Pesu, M. (2015). A genome-wide expression quantitative trait loci analysis of proprotein convertase subtilisin/kexin enzymes identifies a novel regulatory gene variant for FURIN expression and blood pressure. HUMAN GENETICS, 134(6), 627-636.

Teerlink, C. C., Thibodeau, S. N., McDonnell, S. K., Schaid, D. J., Rinckleb, A., Maier, C., ... Cannon-Albright, L. A. (2014). Association analysis of 9,560 prostate cancer cases from the International Consortium of Prostate Cancer Genetics confirms the role of reported prostate cancer associated SNPs for familial disease. HUMAN GENETICS, 133(3), 347-356.

Traylor, M., Mäkelä, K. M., Kilarski, L. L., Holliday, E. G., Devan, W. J., Nalls, M. A., ... Markus, H. S. (2014). A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach. PLOS GENETICS, 10(7), [e1004469].

Emmert-Streib, F. (2014). Enhancing our understanding of ways to analyze metagenomes. Frontiers in Genetics, 5(APR), [Article 108].

Olsen, C., Bontempi, G., Emmert-Streib, F., Quackenbush, J., & Haibe-Kains, B. (2014). Relevance of different prior knowledge sources for inferring gene interaction networks. Frontiers in Genetics, 5(JUN), [Article 177].

Emmert-Streib, F., Simoes, R. D. M., Mullan, P., Haibe-Kains, B., & Dehmer, M. (2014). The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks. Frontiers in Genetics, 5(FEB), [Article 15].

Emmert-Streib, F., Dehmer, M., & Haibe-Kains, B. (2014). Untangling statistical and biological models to understand network inference: The need for a genomics network ontology. Frontiers in Genetics, 5(AUG), [article 229].

Oksala, N., Pärssinen, J., Seppälä, I., Raitoharju, E., Ivana, K., Hernesniemi, J., ... Lehtimäki, T. (2013). Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS). Circulation: Cardiovascular Genetics, 6(6), 579-587.

Kleber, M. E., Seppälä, I., Pilz, S., Hoffmann, M. M., Tomaschitz, A., Oksala, N., ... Meinitzer, A. (2013). Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: The atheroremo consortium. Circulation: Cardiovascular Genetics, 6(5), 505-513.

Nickerson, M. L., Im, K. M., Misner, K. J., Tan, W., Lou, H., Gold, B., ... Bova, G. S. (2013). Somatic alterations contributing to metastasis of a castration-resistant prostate cancer. HUMAN MUTATION, 34(9), 1231-1241.

Simpson, C. L., Cropp, C. D., Wahlfors, T., George, A., Jones, M. S., Harper, U., ... Bailey-Wilson, J. E. (2013). Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis. EUROPEAN JOURNAL OF HUMAN GENETICS, 21(4), 437-443.

Al Olama, A. A., Kote-Jarai, Z., Schumacher, F. R., Wiklund, F., Berndt, S. I., Benlloch, S., ... Eeles, R. A. (2013). A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. HUMAN MOLECULAR GENETICS, 22(2), 408-415. [dds425].

Xu, J., Lange, E. M., Lu, L., Zheng, S. L., Wang, Z., Thibodeau, S. N., ... Isaacs, W. B. (2013). HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG). HUMAN GENETICS, 132(1), 5-14.

Simoes, R. D. M., Dehmer, M., & Emmert-Streib, F. (2013). B-cell lymphoma gene regulatory networks: Biological consistency among inference methods. Frontiers in Genetics, 4(DEC), [00281].

Emmert-Streib, F. (2013). Personalized medicine: Has it started yet? A reconstruction of the early history. Frontiers in Genetics, 3(JAN), [Article 313].

Aavikko, M., Li, S. P., Saarinen, S., Alhopuro, P., Kaasinen, E., Morgunova, E., ... Vahteristo, P. (2012). Loss of SUFU function in familial multiple meningioma. AMERICAN JOURNAL OF HUMAN GENETICS, 91(3), 520-526.

Inouye, M., Ripatti, S., Kettunen, J., Lyytikäinen, L. P., Oksala, N., Laurila, P. P., ... de Bakker, P. I. W. (2012). Novel Loci for Metabolic Networks and Multi-Tissue Expression Studies Reveal Genes for Atherosclerosis. PLOS GENETICS, 8(8), [e1002907].

Jin, G., Lu, L., Cooney, K. A., Ray, A. M., Zuhlke, K. A., Lange, E. M., ... Xu, J. (2012). Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis: Evidence from the International Consortium for Prostate Cancer Genetics (ICPCG). HUMAN GENETICS, 131(7), 1095-1103.

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Heikura, T., Nieminen, T., Roschier, M. M., Karvinen, H., Kaikkonen, M. U., Mähönen, A. J., ... Ylä-Herttuala, S. (2012). Baculovirus-mediated vascular endothelial growth factor-DΔNΔC gene transfer induces angiogenesis in rabbit skeletal muscle. JOURNAL OF GENE MEDICINE, 14(1), 35-43.

Emmert-Streib, F., Glazko, G. V., Altay, G., & Simoes, R. D. M. (2012). Statistical inference and reverse engineering of gene regulatory networks from observational expression data. Frontiers in Genetics, 3(FEB), [Article 8].

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