Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data

    Yu, G., Zhang, B., Bova, G. S., Xu, J., Shih, I. M. & Wang, Y., Jun 2011, In : Bioinformatics. 27, 11, p. 1473-1480 8 p., btr183.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Two models for hydraulic cylinders in flexible multibody simulations

    Ylinen, A., Mäkinen, J. & Kouhia, R., 2016, Computational Methods for Solids and Fluids: Multiscale Analysis, Probability Aspects and Model Reduction. Springer, p. 463-493 31 p. (Computational Methods in Applied Sciences; vol. 41).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  3. Published

    A novel epidemic model considering demographics and intercity commuting on complex dynamical networks

    Yin, Q., Wang, Z., Xia, C., Dehmer, M., Emmert-Streib, F. & Jin, Z., 2020, In : Applied Mathematics and Computation. 386, 21 p., 125517.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Visibility-Aware Part Coding for Vehicle Viewing Angle Estimation

    Yang, D., Qian, Y., Cai, D., Yan, S., Kämäräinen, J-K. & Chen, K., 1 Aug 2019, 9th International Conference on Information Science and Technology, ICIST 2019. IEEE, p. 65-70 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Published

    A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers

    Wang, J. & Ray, A. K., 2014, In : Journal of Computational and Theoretical Nanoscience. 11, 7, p. 1710-1717 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Graph entropy based on the number of spanning forests of c-cyclic graphs

    Wan, P., Tu, J., Dehmer, M., Zhang, S. & Emmert-Streib, F., 15 Dec 2019, In : Applied Mathematics and Computation. 363, 124616.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Integral kernels for k-hypermonogenic functions

    Vuojamo, V. & Eriksson, S-L., 2017, In : Complex Variables and Elliptic Equations. 62, 9, p. 1-12 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Melting of copper clusters

    Valkealahti, S. & Manninen, M., 1 Jan 1993, In : Computational Materials Science. 1, 2, p. 123-134 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Machine learning: How it can help nanocomputing

    Uusitalo, M. A., Peltonen, J. & Ryhänen, T., Aug 2011, In : Journal of Computational and Theoretical Nanoscience. 8, 8, p. 1347-1363 17 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  10. Published

    NetBioV: An R package for visualizing large network data in biology and medicine

    Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2 Apr 2014, In : Bioinformatics. 30, 19, p. 2834-2836 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

    Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., Dehmer, M. & Emmert-Streib, F., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3345-3347 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Accepted/In press

    Cuts for 3-D magnetic scalar potentials: Visualizing unintuitive surfaces arising from trivial knots

    Stockrahm, A., Lahtinen, V., Kangas, J. J. J. & Kotiuga, P. R., 2019, (Accepted/In press) In : Computers and Mathematics with Applications.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Introducing Multi-Convexity in Path Constrained Trajectory Optimization for Mobile Manipulators

    Singh, A. K., Ahonen, A., Ghabcheloo, R. & Mueller, A., 2020, European Control Conference 2020, ECC 2020. IEEE, p. 1178-1185 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    A robust AMMI model for the analysis of genotype-by-environment data

    Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Homogeneous (α,k)-Polynomial Solutions of the Fractional Riesz System in Hyperbolic Space

    Orelma, H. & Vieira, N., 2017, In : Complex Analysis and Operator Theory. 11, 5, p. 1253–1267 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Sound Event Detection in the DCASE 2017 Challenge

    Mesaros, A., Diment, A., Elizalde, B., Heittola, T., Vincent, E., Raj, B. & Virtanen, T., 1 Jun 2019, In : IEEE/ACM Transactions on Audio Speech and Language Processing. 27, 6, p. 992-1006 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    SCIP: a single-cell image processor toolbox

    Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Growth behavior and magnetic properties of spherical uranium oxide nanoclusters

    Ma, L. & Ray, A. K., Feb 2013, In : Journal of Computational and Theoretical Nanoscience. 10, 2, p. 334-340 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

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