Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI

    Pajula, J. & Tohka, J., 2016, In : Computational Intelligence and Neuroscience. 2016, 2094601.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Fault tolerant machine learning for nanoscale cognitive radio

    Pajarinen, J., Peltonen, J. & Uusitalo, M. A., Feb 2011, In : Neurocomputing. 74, 5, p. 753-764 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2000, In : Journal of Physiology: Paris. 94, 5-6, p. 555-567 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2001, In : Journal of Physiology: Paris. 95, 1-6, p. 497 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    From in silico astrocyte cell models to neuron-astrocyte network models: A review

    Oschmann, F., Berry, H., Obermayer, K. & Lenk, K., 2018, In : BRAIN RESEARCH BULLETIN. 136, p. 76-84

    Research output: Contribution to journalReview ArticleScientificpeer-review

  8. Published

    Assessment of PIV performance in validating CFD models from nasal cavity CBCT scans

    Ormiskangas, J., Valtonen, O., Kivekäs, I., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Harju, T., Saarenrinne, P. & Rautiainen, M., 1 Nov 2020, In : Respiratory Physiology and Neurobiology. 282, 9 p., 103508.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J., 1 Nov 2014, In : EPILEPSY RESEARCH. 108, 9, p. 1675-1679 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J., Dec 2012, In : EPILEPSIA. 53, 12

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients

    Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I., 15 Sep 2012, In : JOURNAL OF NEUROIMMUNOLOGY. 250, 1-2, p. 106-110 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K., 2015, In : NeuroImage: Clinical. 7, p. 823-829 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

    Moradi, E., Khundrakpam, B., Lewis, J. D., Evans, A. C. & Tohka, J., 2017, In : NeuroImage. 144, A, p. 128–141

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    A realistic, accurate and fast source modeling approach for the EEG forward problem

    Miinalainen, T., Rezaei, A., Us, D., Nüßing, A., Engwer, C., Wolters, C. H. & Pursiainen, S., 2019, In : NeuroImage. 184, 1, p. 56-67 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke

    Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T., Oct 2012, In : CEREBROVASCULAR DISEASES. 34, 3, p. 191-198 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies

    Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J., Mar 2011, In : European Journal of Neurology. 18, 3, p. 402-409 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells

    Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R., Apr 2013, In : Journal of Neuroscience Methods. 215, 1, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    On the effect of network structure and synaptic mechanisms on sustained bursting activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 8 Jul 2013, Twenty Second Annual Computational Neuroscience Meeting: CNS*2013. Cymbalyuk, G. & Prinz, A. (eds.). Paris, France: BioMed Central, Vol. Volume 14 Suppl 1. p. P247 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Published

    Effects of local structure of neuronal networks on spiking activity in silico

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 18 Jul 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P202 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review