Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Chromatin organization regulates viral egress dynamics

    Aho, V., Myllys, M., Ruokolainen, V., Hakanen, S., Mäntylä, E., Virtanen, J., Hukkanen, V., Kühn, T., Timonen, J., Mattila, K., Larabell, C. A. & Vihinen-Ranta, M., 1 Dec 2017, In : Scientific Reports. 7, 1, 3692.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Automatic Posture and Movement Tracking of Infants with Wearable Movement Sensors

    Airaksinen, M., Räsänen, O., Ilén, E., Häyrinen, T., Kivi, A., Marchi, V., Gallen, A., Blom, S., Varhe, A., Kaartinen, N., Haataja, L. & Vanhatalo, S., 13 Jan 2020, In : Scientific Reports. 10, 1, 13 p., 169.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Facile strain analysis of largely bending films by a surface-labelled grating method

    Akamatsu, N., Tashiro, W., Saito, K., Mamiya, J. I., Kinoshita, M., Ikeda, T., Takeya, J., Fujikawa, S., Priimagi, A. & Shishido, A., 20 Jun 2014, In : Scientific Reports. 4, 5377.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Speeding up crystallization

    Akola, J. & Jones, R. O., 15 Dec 2017, In : Science. 358, 6369, p. 1386 1 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  5. Published

    DroneRF dataset: A dataset of drones for RF-based detection, classification and identification

    Allahham, MHD. S., Al-Sa'd, M. F., Al-Ali, A., Mohamed, A., Khattab, T. & Erbad, A., 1 Oct 2019, In : Data in Brief. 26, 104313.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    On the linear programming bound for linear Lee codes

    Astola, H. & Tabus, I., 1 Mar 2016, In : SpringerPlus. 5, 1, p. 1-13 13 p., 246.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Aerosol gas exchange system (AGES) for nanoparticle sampling at elevated temperatures: Modeling and experimental characterization

    Bainschab, M., Martikainen, S., Keskinen, J., Bergmann, A. & Karjalainen, P., 20 Nov 2019, In : Scientific Reports. 9, 1, 12 p., 17149.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Multilayer Aggregation with Statistical Validation: Application to Investor Networks

    Baltakys, K., Kanniainen, J. & Emmert-Streib, F., 1 Dec 2018, In : Scientific Reports. 8, 1, 8198.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Real sequence effects on the search dynamics of transcription factors on DNA

    Bauer, M., Rasmussen, E. S., Lomholt, M. A. & Metzler, R., 8 Jul 2015, In : Scientific Reports. 5, 10072.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Automatic classification of IgA endomysial antibody test for celiac disease: a new method deploying machine learning

    Caetano dos Santos, F. L., Michalek, I. M., Laurila, K., Kaukinen, K., Hyttinen, J. & Lindfors, K., 1 Dec 2019, In : Scientific Reports. 9, 1, 9217.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Step down Vascular Calcification Analysis using State-of-the-Art Nanoanalysis Techniques

    Curtze, S. C., Kratz, M., Steinert, M. & Vogt, S., 16 Mar 2016, In : Scientific Reports. 6, 23285.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Mechanically driven strategies to improve electromechanical behaviour of printed stretchable electronic systems

    Di Vito, D., Mosallaei, M., Khorramdel, B., Kanerva, M. & Mäntysalo, M., 2020, In : Scientific Reports. 10, 1, 11 p., 12037.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Surface-Enhanced Impulsive Coherent Vibrational Spectroscopy

    Du, J., Harra, J., Virkki, M., Mäkelä, J. M., Leng, Y., Kauranen, M. & Kobayashi, T., 4 Nov 2016, In : Scientific Reports. 6, 36471.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data

    Emmert-Streib, F., De Matos Simoes, R., Tripathi, S., Glazko, G. V. & Dehmer, M., 2012, In : Scientific Reports. 2, 513.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Effects of Sintering Temperature on Crystallization and Fabrication of Porous Bioactive Glass Scaffolds for Bone Regeneration

    Erasmus, E. P., Johnson, O. T., Sigalas, I. & Massera, J., 1 Dec 2017, In : Scientific Reports. 7, 1, 6046.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    In vitro Evaluation of Porous borosilicate, borophosphate and phosphate Bioactive Glasses Scaffolds fabricated using Foaming Agent for Bone Regeneration

    Erasmus, E. P., Sule, R., Johnson, O. T., Massera, J. & Sigalas, I., 1 Dec 2018, In : Scientific Reports. 8, 1, 3699.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Subangstrom resolution x-ray structure details aquaporin-water interactions

    Eriksson, U. K., Fischer, G., Friemann, R., Enkavi, G., Tajkhorshid, E. & Neutze, R., 2013, In : Science. 340, 6138, p. 1346-1349 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Lower bound for the spatial extent of localized modes in photonic-crystal waveguides with small random imperfections

    Faggiani, R., Baron, A., Zang, X., Lalouat, L., Schulz, S. A., O'Regan, B., Vynck, K., Cluzel, B., De Fornel, F., Krauss, T. F. & Lalanne, P., 1 Jun 2016, In : Scientific Reports. 6, 27037.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Upstream Transcription Factor 1 (USF1) allelic variants regulate lipoprotein metabolism in women and USF1 expression in atherosclerotic plaque

    Fan, Y. M., Hernesniemi, J., Oksala, N., Levula, M., Raitoharju, E., Collings, A., Hutri-Kähönen, N., Juonala, M., Marniemi, J., Lyytikäinen, L. P., Seppälä, I., Mennander, A., Tarkka, M., Kangas, A. J., Soininen, P., Salenius, J. P., Klopp, N., Illig, T., Laitinen, T., Ala-Korpela, M., Laaksonen, R., Viikari, J., Kähönen, M., Raitakari, O. T. & Lehtimäki, T., 11 Apr 2014, In : Scientific Reports. 4, 4650.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Sensitivity enhancement of flexible gas sensors via conversion of inkjet-printed silver electrodes into porous gold counterparts

    Fang, Y., Akbari, M., Sydänheimo, L., Ukkonen, L. & Tentzeris, M. M., 1 Dec 2017, In : Scientific Reports. 7, 1, 8988.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Azobenzene-based sinusoidal surface topography drives focal adhesion confinement and guides collective migration of epithelial cells

    Fedele, C., Mäntylä, E., Belardi, B., Hamkins-Indik, T., Cavalli, S., Netti, P. A., Fletcher, D. A., Nymark, S., Priimagi, A. & Ihalainen, T. O., 2020, In : Scientific Reports. 10, 1, 15 p., 15329.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Highly ductile amorphous oxide at room temperature and high strain rate

    Frankberg, E. J., Kalikka, J., Ferré, F. G., Joly-Pottuz, L., Salminen, T., Hintikka, J., Hokka, M., Koneti, S., Douillard, T., Le Saint, B., Kreiml, P., Cordill, M. J., Epicier, T., Stauffer, D., Vanazzi, M., Roiban, L., Akola, J., Fonzo, F. D., Levänen, E. & Masenelli-Varlot, K., 15 Nov 2019, In : Science. 366, 6467, p. 864-869 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    First passage time distribution in heterogeneity controlled kinetics: Going beyond the mean first passage time

    Godec, A. & Metzler, R., 8 Feb 2016, In : Scientific Reports. 6, 20349.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors

    Guixà-González, R., Javanainen, M., Gómez-Soler, M., Cordobilla, B., Domingo, J. C., Sanz, F., Pastor, M., Ciruela, F., Martinez-Seara, H. & Selent, J., 22 Jan 2016, In : Scientific Reports. 6, 19839.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    The evolutionary history of lethal metastatic prostate cancer

    Gundem, G., Van Loo, P., Kremeyer, B., Alexandrov, L. B., Tubio, J. M. C., Papaemmanuil, E., Brewer, D. S., Kallio, H. M. L., Högnäs, G., Annala, M., Kivinummi, K., Goody, V., Latimer, C., O'Meara, S., Dawson, K. J., Isaacs, W., Emmert-Buck, M. R., Nykter, M., Foster, C., Kote-Jarai, Z., Easton, D., Whitaker, H. C., Neal, D. E., Cooper, C. S., Eeles, R. A., Visakorpi, T., Campbell, P. J., McDermott, U., Wedge, D. C. & Bova, G. S., 15 Apr 2015, In : Nature. 520, 7547, p. 353-357 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Structure-phenotype correlations of human CYP21A2 mutations in congenital adrenal hyperplasia

    Haider, S., Islam, B., D'Atri, V., Sgobba, M., Poojari, C., Sun, L., Yuen, T., Zaidi, M. & New, M. I., 12 Feb 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 7, p. 2605-2610 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

    Honkela, A., Peltonen, J., Topa, H., Charapitsa, I., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M., 20 Oct 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 42, p. 13115-13120 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Genetic similarity of biological samples to counter bio-hacking of DNA-sequencing functionality

    Islam, M. S., Ivanov, S., Robson, E., Dooley-Cullinane, T., Coffey, L., Doolin, K. & Balasubramaniam, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 8684.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Brain hemodynamic activity during viewing and re-viewing of comedy movies explained by experienced humor

    Jääskeläinen, I. P., Pajula, J., Tohka, J., Lee, H. J., Kuo, W. J. & Lin, F. H., 21 Jun 2016, In : Scientific Reports. 6, 27741.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Physical chemistry: Water's wafer-thin surface

    Jungwirth, P., 8 Jun 2011, In : Nature. 474, 7350, p. 168-169 2 p.

    Research output: Contribution to journalShort surveyScientificpeer-review

  31. Published

    Parkinson's disease detection from 20-step walking tests using inertial sensors of a smartphone: Machine learning approach based on an observational case-control study

    Juutinen, M., Wang, C., Zhu, J., Haladjian, J., Ruokolainen, J., Puustinen, J. & Vehkaoja, A., 2020, In : PLoS ONE. 15, 7, 19 p., e0236258.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Entropy analysis of word-length series of natural language texts: Effects of text language and genre

    Kalimeri, M., Constantoudis, V., Papadimitriou, C., Karamanos, K., Diakonos, F. K. & Papageorgiou, H., Sep 2012, In : INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 22, 9, 1250223.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Automatization and stress analysis data of CoCr laser weld fatigue tests

    Kanerva, M., Besharat, Z., Pärnänen, T., Jokinen, J., Honkanen, M., Sarlin, E., Göthelid, M. & Schlenzka, D., 1 Oct 2019, In : Data in Brief. 26, 104374.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Changes in hemodynamics associated with metabolic syndrome are more pronounced in women than in men

    Kangas, P., Tikkakoski, A., Kettunen, J., Eräranta, A., Huhtala, H., Kähönen, M., Sipilä, K., Mustonen, J. & Pörsti, I., 5 Dec 2019, In : Scientific Reports. 9, 1, 11 p., 18377.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    N-Glycosylation as determinant of epidermal growth factor receptor conformation in membranes

    Kaszuba, K., Grzybek, M., Orłowski, A., Danne, R., Róg, T., Simons, K., Coskun, Ü. & Vattulainen, I., 7 Apr 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 14, p. 4334-4339 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Väitöstilaisuus yliopiston imagonluojana

    Katko, T. S., May 2017, In : Tiedepolitiikka. 42, 1, p. 63-64 2 p.

    Research output: Contribution to journalComment/debateScientific

  37. Published

    Optimized dispersion quality of aqueous carbon nanotube colloids as a function of sonochemical yield and surfactant/CNT ratio

    Keinänen, P., Siljander, S., Koivula, M., Sethi, J., Sarlin, E., Vuorinen, J. & Kanerva, M., 1 Sep 2018, In : Heliyon. 4, 9, 15 p., e00787.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Scaling and correlation properties of RR and QT intervals at the cellular level

    Kim, J., Shah, D., Potapov, I., Latukka, J., Aalto-Setälä, K. & Räsänen, E., 2019, In : Scientific Reports. 9, 1, 3651.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Personalized Monitoring and Advance Warning System for Cardiac Arrhythmias

    Kiranyaz, S., Ince, T. & Gabbouj, M., 1 Dec 2017, In : Scientific Reports. 7, 1, 9270.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Gaussian Light Model in Brightfield Optical Projection Tomography

    Koskela, O., Montonen, T., Belay, B., Figueiras, E., Pursiainen, S. & Hyttinen, J., 26 Sep 2019, In : Scientific Reports. 9, 1

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Real-time characterization of spectral instabilities in a mode-locked fibre laser exhibiting soliton-similariton dynamics

    Lapre, C., Billet, C., Meng, F., Ryczkowski, P., Sylvestre, T., Finot, C., Genty, G. & Dudley, J. M., 27 Sep 2019, In : Scientific Reports. 9, 1

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning

    Larjo, A. & Lähdesmäki, H., 27 Dec 2015, In : Eurasip Journal on Bioinformatics and Systems Biology. 2015, 1, 6.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Quasi two-dimensional astigmatic solitons in soft chiral metastructures

    Laudyn, U. A., Jung, P. S., Karpierz, M. A. & Assanto, G., 15 Mar 2016, In : Scientific Reports. 6, 22923.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Curved optical solitons subject to transverse acceleration in reorientational soft matter

    Laudyn, U. A., Kwaśny, M., Sala, F. A., Karpierz, M. A., Smyth, N. F. & Assanto, G., 1 Dec 2017, In : Scientific Reports. 7, 1, 12385.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Multicomponent new particle formation from sulfuric acid, ammonia, and biogenic vapors

    Lehtipalo, K., Yan, C., Dada, L., Bianchi, F., Xiao, M., Wagner, R., Stolzenburg, D., Ahonen, L. R., Amorim, A., Baccarini, A., Bauer, P. S., Baumgartner, B., Bergen, A., Bernhammer, A. K., Breitenlechner, M., Brilke, S., Buchholz, A., Mazon, S. B., Chen, D., Chen, X., Dias, A., Dommen, J., Draper, D. C., Duplissy, J., Ehn, M., Finkenzeller, H., Fischer, L., Frege, C., Fuchs, C., Garmash, O., Gordon, H., Hakala, J., He, X., Heikkinen, L., Heinritzi, M., Helm, J. C., Hofbauer, V., Hoyle, C. R., Jokinen, T., Kangasluoma, J., Kerminen, V. M., Kim, C., Kirkby, J., Kontkanen, J., Kürten, A., Lawler, M. J., Mai, H., Mathot, S., Nieminen, T. & Virtanen, A., 12 Dec 2018, In : Science Advances. 4, 12, eaau5363.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Structure and permeation mechanism of a mammalian urea transporter

    Levin, E. J., Cao, Y., Enkavi, G., Quick, M., Pan, Y., Tajkhorshid, E. & Zhou, M., 10 Jul 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 28, p. 11194-11199 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Transient formation of water-conducting states in membrane transporters

    Li, J., Shaikh, S. A., Enkavi, G., Wen, P. C., Huang, Z. & Tajkhorshid, E., 7 May 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 19, p. 7696-7701 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Human iPSC derived disease model of MERTK-associated retinitis pigmentosa

    Lukovic, D., Castro, A. A., Delgado, A. B. G., Bernal, M. D. L. A. M., Pelaez, N. L., Lloret, A. D., Espejo, R. P., Kamenarova, K., Sánchez, L. F., Cuenca, N., Cortón, M., Fernandez, A. A., Sorkio, A., Skottman, H., Ayuso, C., Erceg, S. & Bhattacharya, S. S., 11 Aug 2015, In : Scientific Reports. 5, 12910.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Rate-limiting steps in transcription dictate sensitivity to variability in cellular components

    Mäkelä, J., Kandavalli, V. & Ribeiro, A. S., 1 Dec 2017, In : Scientific Reports. 7, 1, 10588.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Tooth wear and dentoalveolar remodeling are key factors of morphological variation in the Dmanisi mandibles

    Margvelashvili, A., Zollikofer, C. P. E., Lordkipanidze, D., Peltomäki, T. & De León, M. S. P., 22 Oct 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 43, p. 17278-17283 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

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