Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Active optical clock based on four-level quantum system

    Zhang, T. G., Wang, Y. F., Zang, X. R., Zhuang, W. & Chen, J. B., Jun 2013, In : Chinese Science Bulletin. 58, 17, p. 2033-2038 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Combining deep learning with token selection for patient phenotyping from electronic health records

    Yang, Z., Dehmer, M., Yli-Harja, O. & Emmert-Streib, F., 2020, In : Scientific Reports. 10, 1, 18 p., 1432.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations

    Wilmes, S., Hafer, M., Vuorio, J., Tucker, J. A., Winkelmann, H., Löchte, S., Stanly, T. A., Pulgar Prieto, K. D., Poojari, C., Sharma, V., Richter, C. P., Kurre, R., Hubbard, S. R., Christopher Garcia, K., Moraga, I., Vattulainen, I., Hitchcock, I. S. & Piehler, J., 7 Feb 2020, In : Science. 367, 6478, p. 643-652 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women

    Wiklund, P., Zhang, X., Pekkala, S., Autio, R., Kong, L., Yang, Y., Keinänen-Kiukaanniemi, S., Alen, M. & Cheng, S., 15 Apr 2016, In : Scientific Reports. 6, 24540.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Redox-coupled quinone dynamics in the respiratory complex I

    Warnau, J., Sharma, V., Gamiz-Hernandez, A. P., Luca, A. D., Haapanen, O., Vattulainen, I., Wikström, M., Hummer, G. & Kaila, V. R. I., 4 Sep 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 36, p. E8413-E8420

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Rapid growth of new atmospheric particles by nitric acid and ammonia condensation

    Wang, M., Kong, W., Marten, R., He, X. C., Chen, D., Pfeifer, J., Heitto, A., Kontkanen, J., Dada, L., Kürten, A., Yli-Juuti, T., Manninen, H. E., Amanatidis, S., Amorim, A., Baalbaki, R., Baccarini, A., Bell, D. M., Bertozzi, B., Bräkling, S., Brilke, S., Murillo, L. C., Chiu, R., Chu, B., De Menezes, L. P., Duplissy, J., Finkenzeller, H., Carracedo, L. G., Granzin, M., Guida, R., Hansel, A., Hofbauer, V., Krechmer, J., Lehtipalo, K., Lamkaddam, H., Lampimäki, M., Lee, C. P., Makhmutov, V., Marie, G., Mathot, S., Mauldin, R. L., Mentler, B., Müller, T., Onnela, A., Partoll, E., Petäjä, T., Philippov, M., Pospisilova, V., Ranjithkumar, A., Rissanen, M., Rörup, B., Scholz, W., Shen, J., Simon, M., Sipilä, M., Steiner, G., Stolzenburg, D., Tham, Y. J., Tomé, A., Wagner, A. C., Wang, D. S., Wang, Y., Weber, S. K., Winkler, P. M., Wlasits, P. J., Wu, Y., Xiao, M., Ye, Q., Zauner-Wieczorek, M., Zhou, X., Volkamer, R., Riipinen, I., Dommen, J., Curtius, J., Baltensperger, U., Kulmala, M., Worsnop, D. R., Kirkby, J., Seinfeld, J. H., El-Haddad, I., Flagan, R. C. & Donahue, N. M., 14 May 2020, In : Nature. 581, 7807, p. 184-189 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    X-ray microtomography is a novel method for accurate evaluation of small-bowel mucosal morphology and surface area

    Virta, J., Hannula, M., Tamminen, I., Lindfors, K., Kaukinen, K., Popp, A., Taavela, J., Saavalainen, P., Hiltunen, P., Hyttinen, J. & Kurppa, K., 2020, In : Scientific Reports. 10, 1, 11 p., 13164.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Comparison of electron injection and recombination on TiO2 nanoparticles and ZnO nanorods photosensitized by phthalocyanine

    Virkki, K., Tervola, E., Ince, M., Torres, T. & Tkachenko, N. V., 11 Jul 2018, In : Royal Society Open Science. 5, 7, 180323.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Three-Dimensional Printing of the Nasal Cavities for Clinical Experiments

    Valtonen, O., Ormiskangas, J., Kivekäs, I., Rantanen, V., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Saarenrinne, P. & Rautiainen, M., 16 Jan 2020, In : Scientific Reports. 10, 7 p., 502.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

    Valkonen, M., Ruusuvuori, P., Kartasalo, K., Nykter, M., Visakorpi, T. & Latonen, L., 20 Mar 2017, In : Scientific Reports. 7, 44831.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Behaviour of one-step spray-coated carbon nanotube supercapacitor in ambient light harvester circuit with printed organic solar cell and electrochromic display

    Tuukkanen, S., Välimäki, M., Lehtimäki, S., Vuorinen, T. & Lupo, D., 9 Mar 2016, In : Scientific Reports. 6, 22967.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

    Turner, K. M., Sun, Y., Ji, P., Granberg, K. J., Bernard, B., Hu, L., Cogdell, D. E., Zhou, X., Yli-Harja, O., Nykter, M., Shmulevich, I., Yung, W. K. A., Fuller, G. N. & Zhang, W., 17 Mar 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3421-3426 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

    Tubio, J. M. C., Li, Y., Ju, Y. S., Martincorena, I., Cooke, S. L., Tojo, M., Gundem, G., Pipinikas, C. P., Zamora, J., Raine, K., Menzies, A., Roman-Garcia, P., Fullam, A., Gerstung, M., Shlien, A., Tarpey, P. S., Papaemmanuil, E., Knappskog, S., Van Loo, P., Ramakrishna, M., Davies, H. R., Marshall, J., Wedge, D. C., Teague, J. W., Butler, A. P., Nik-Zainal, S., Alexandrov, L., Behjati, S., Yates, L. R., Bolli, N., Mudie, L., Hardy, C., Martin, S., McLaren, S., O'Meara, S., Anderson, E., Maddison, M., Gamble, S., Foster, C., Warren, A. Y., Whitaker, H., Brewer, D., Eeles, R., Cooper, C., Neal, D., Lynch, A. G., Visakorpi, T., Isaacs, W. B., Van't Veer, L., Caldas, C., Desmedt, C., Sotiriou, C., Aparicio, S., Foekens, J. A., Eyfjörd, J. E., Lakhani, S. R., Thomas, G., Myklebost, O., Span, P. N., Børresen-Dale, A. L., Richardson, A. L., Van De Vijver, M., Vincent-Salomon, A., Van Den Eynden, G. G., Flanagan, A. M., Futreal, P. A., Janes, S. M., Bova, G. S., Stratton, M. R., McDermott, U. & Campbell, P. J., 1 Aug 2014, In : Science. 345, 6196, 1251343.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  14. Published

    Sub-parts-per-trillion level sensitivity in trace gas detection by cantilever-enhanced photo-acoustic spectroscopy

    Tomberg, T., Vainio, M., Hieta, T. & Halonen, L., 2018, In : Scientific Reports. 8, 1, 1848.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Emergent rogue wave structures and statistics in spontaneous modulation instability

    Toenger, S., Godin, T., Billet, C., Dias, F., Erkintalo, M., Genty, G. & Dudley, J. M., 20 May 2015, In : Scientific Reports. 5, 10380.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Automatic knee osteoarthritis diagnosis from plain radiographs: A deep learning-based approach

    Tiulpin, A., Thevenot, J., Rahtu, E., Lehenkari, P. & Saarakkala, S., 1 Dec 2018, In : Scientific Reports. 8, 1, 1727.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data

    Tiulpin, A., Klein, S., Bierma-Zeinstra, S. M. A., Thevenot, J., Rahtu, E., Meurs, J. V., Oei, E. H. G. & Saarakkala, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 20038.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    An Optical Method for the In-Vivo Characterization of the Biomechanical Response of the Right Ventricle

    Soltani, A., Lahti, J., Järvelä, K., Curtze, S., Laurikka, J., Hokka, M. & Kuokkala, V. T., 1 Dec 2018, In : Scientific Reports. 8, 1, 6831.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase

    Sharma, V., Enkavi, G., Vattulainen, I., Róg, T. & Wikström, M., 17 Feb 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 7, p. 2040-2045 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Redox-induced activation of the proton pump in the respiratory complex I

    Sharma, V., Belevich, G., Gamiz-Hernandez, A. P., Róg, T., Vattulainen, I., Verkhovskaya, M. L., Wikström, M., Hummer, G. & Kaila, V. R. I., 15 Sep 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 37, p. 11571-11576 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Bioinspired underwater locomotion of light-driven liquid crystal gels

    Shahsavan, H., Aghakhani, A., Zeng, H., Guo, Y., Davidson, Z. S., Priimägi, A. & Sitti, M., 10 Mar 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 10, p. 5125-5133 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Mechanistic principles underlying regulation of the actin cytoskeleton by phosphoinositides

    Senju, Y., Kalimeri, M., Koskela, E. V., Somerharju, P., Zhao, H., Vattulainen, I. & Lappalainen, P., 24 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. E8977-E8986

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Porous poly-L-lactide-co-1-caprolactone scaffold: A novel biomaterial for vaginal tissue engineering

    Sartoneva, R., Kuismanen, K., Juntunen, M., Karjalainen, S., Hannula, M., Kyllönen, L., Hyttinen, J., Huhtala, H., Paakinaho, K. & Miettinen, S., 1 Aug 2018, In : Royal Society Open Science. 5, 8, 180811.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Segmented molecular design of self-healing proteinaceous materials

    Sariola, V., Pena-Francesch, A., Jung, H., Çetinkaya, M., Pacheco, C., Sitti, M. & Demirel, M. C., 1 Sep 2015, In : Scientific Reports. 5, 13482.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Optical detection of radon decay in air

    Sand, J., Ihantola, S., Peräjärvi, K., Toivonen, H. & Toivonen, J., 12 Feb 2016, In : Scientific Reports. 6, 21532.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Machine learning analysis of rogue solitons in supercontinuum generation

    Salmela, L., Lapre, C., Dudley, J. M. & Genty, G., 2020, In : Scientific Reports. 10, 9596.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2

    Ruskamo, S., Nieminen, T., Kristiansen, C. K., Vatne, G. H., Baumann, A., Hallin, E. I., Raasakka, A., Joensuu, P., Bergmann, U., Vattulainen, I. & Kursula, P., 1 Dec 2017, In : Scientific Reports. 7, 1, 6510.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Trends for isolated amino acids and dipeptides: Conformation, divalent ion binding, and remarkable similarity of binding to calcium and lead

    Ropo, M., Blum, V. & Baldauf, C., 3 Nov 2016, In : Scientific Reports. 6, 35772.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Traffic is a major source of atmospheric nanocluster aerosol

    Rönkkö, T., Kuuluvainen, H., Karjalainen, P., Keskinen, J., Hillamo, R., Niemi, J. V., Pirjola, L., Timonen, H. J., Saarikoski, S., Saukko, E., Järvinen, A., Silvennoinen, H., Rostedt, A., Olin, M., Yli-Ojanperä, J., Nousiainen, P., Kousa, A. & Dal Maso, M., 18 Jul 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 29, p. 7549-7554 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Infiltrated bunch of solitons in Bi-doped frequency-shifted feedback fibre laser operated at 1450 nm

    Rissanen, J., Korobko, D. A., Zolotovsky, I. O., Melkumov, M., Khopin, V. F. & Gumenyuk, R., 10 Mar 2017, In : Scientific Reports. 7, 44194.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Superdiffusion dominates intracellular particle motion in the supercrowded cytoplasm of pathogenic Acanthamoeba castellanii

    Reverey, J. F., Jeon, J-H., Bao, H., Leippe, M., Metzler, R. & Selhuber-Unkel, C., 30 Jun 2015, In : Scientific Reports. 5, 11690.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Highly-Sensitive Refractive Index Sensing by Near-infrared Metatronic Nanocircuits

    Rashed, A. R., Gudulluoglu, B., Yun, H. W., Habib, M., Boyaci, I. H., Hong, S. H., Ozbay, E. & Caglayan, H., 1 Dec 2018, In : Scientific Reports. 8, 1, 11457.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    A Highly Efficient Sensor Platform Using Simply Manufactured Nanodot Patterned Substrates

    Rasappa, S., Ghoshal, T., Borah, D., Senthamaraikannan, R., Holmes, J. D. & Morris, M. A., 20 Aug 2015, In : Scientific Reports. 5, 13270.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Non-toxic printed supercapacitors operating in sub-zero conditions

    Railanmaa, A., Lehtimäki, S., Keskinen, J. & Lupo, D., 1 Oct 2019, In : Scientific Reports. 9, 1, 14059.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Skin-conformable printed supercapacitors and their performance in wear

    Railanmaa, A., Soltani, A., Lehtimäki, S., Pournoori, N., Keskinen, J., Hokka, M. & Lupo, D., 2020, In : Scientific Reports. 10, 1, 9 p., 15194.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation

    Pulkkinen, O. & Metzler, R., 4 Dec 2015, In : Scientific Reports. 5, 17820.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Added value of autoregulation and multi-step kinetics of transcription initiation

    Prajapat, M. K. & Ribeiro, A. S., 1 Nov 2018, In : Royal Society Open Science. 5, 11, 181170.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Information transfer in QT-RR dynamics: Application to QT-correction

    Potapov, I., Latukka, J., Kim, J., Luukko, P., Aalto-Setälä, K. & Räsänen, E., 1 Dec 2018, In : Scientific Reports. 8, 1, 9 p., 14992.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Selective effect of cell membrane on synaptic neurotransmission

    Postila, P. A., Vattulainen, I. & Róg, T., 19 Jan 2016, In : Scientific Reports. 6, 19345.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex

    Postila, P. A., Kaszuba, K., Kuleta, P., Vattulainen, I., Sarewicz, M., Osyczka, A. & Róg, T., 26 Sep 2016, In : Scientific Reports. 6, 33607.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Interleukin-6 and microRNA profiles induced by oral bacteria in human atheroma derived and healthy smooth muscle cells

    Pessi, T., Viiri, L. E., Raitoharju, E., Astola, N., Seppälä, I., Waldenberger, M., Lounatmaa, K., Davies, A. H., Lehtimäki, T., Karhunen, P. J. & Monaco, C., 1 Dec 2015, In : SpringerPlus. 4, 1

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    An ensemble of classifiers based on different texture descriptors for texture classification

    Paci, M., Nanni, L. & Severi, S., Jul 2013, In : Journal of King Saud University - Science. 25, 3, p. 235-244 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    1700 nm dispersion managed mode-locked bismuth fiber laser

    Noronen, T., Firstov, S., Dianov, E. & Okhotnikov, O. G., 21 Apr 2016, In : Scientific Reports. 6, 24876.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Ricci-flow based conformal mapping of the proximal femur to identify exercise loading effects

    Narra, N., Abe, S., Dimitrov, V., Nikander, R., Kouhia, R., Sievänen, H. & Hyttinen, J., 2018, In : Scientific Reports. 8, 1, 4823.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Dynamical heart beat correlations during running

    Molkkari, M., Angelotti, G., Emig, T. & Räsänen, E., 2020, In : Scientific Reports. 10, 1, 9 p., 13627.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico

    Mobarak, E., Håversen, L., Manna, M., Rutberg, M., Levin, M., Perkins, R., Rog, T., Vattulainen, I. & Borén, J., 1 Dec 2018, In : Scientific Reports. 8, 1, 13600.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells

    Mikhailova, A., Jylhä, A., Rieck, J., Nättinen, J., Ilmarinen, T., Veréb, Z., Aapola, U., Beuerman, R., Petrovski, G., Uusitalo, H. & Skottman, H., 1 Oct 2015, In : Scientific Reports. 5, 14684.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Caustics and rogue waves in an optical sea

    Mathis, A., Froehly, L., Toenger, S., Dias, F., Genty, G. & Dudley, J. M., 6 Aug 2015, In : Scientific Reports. 5, 12822.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Tooth wear and dentoalveolar remodeling are key factors of morphological variation in the Dmanisi mandibles

    Margvelashvili, A., Zollikofer, C. P. E., Lordkipanidze, D., Peltomäki, T. & De León, M. S. P., 22 Oct 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 43, p. 17278-17283 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Rate-limiting steps in transcription dictate sensitivity to variability in cellular components

    Mäkelä, J., Kandavalli, V. & Ribeiro, A. S., 1 Dec 2017, In : Scientific Reports. 7, 1, 10588.

    Research output: Contribution to journalArticleScientificpeer-review

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