Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation

    Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S., 2014, In : OTOLOGY AND NEUROTOLOGY. 35, 4

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P203 1 p. P203. (Annual Computational Neuroscience Meeting CNS; vol. 12).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  3. Published

    Computational modeling of growth in cortial cultures using the NETMORPH simulation tool

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2010, Neuroscience 2010, 40th Annual Meeting, San Diego, USA, 13-17 November 2010. p. 2 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Published

    The effects of neuron morphology on graph theoretic measures of network connectivity: The analysis of a two-level statistical model

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 10 Jun 2015, In : Frontiers in Neuroanatomy. 9, June, 76.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Computational tools for assessing the properties of 2D neural cell cultures

    Acimovic, J., Teppola, H., Selinummi, J. J. & Linne, M-L., 13 Jul 2009, Eighteenth Annual Computational Neuroscience Meeting: CNS*2009. Johnson, D. (ed.). Berlin: BioMed Central, Vol. 10 (Suppl 1). p. P170 1 p. P170

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Published

    Whole-cell morphological properties of neurons constrain the nonrandom features of network connectivity

    Acimovic, J., Mäki-Marttunen, T. M. & Linne, M-L., 4 Dec 2015, 24th Annual Computational Neuroscience Meeting: CNS*2015. Cymbalyuk, G. & Burkitt, A. (eds.). Prague: BioMed Central, Vol. 16 (Suppl 1). p. P:O7 1 p. O7

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Published

    Emergence of global and local structural features during development of neuronal networks

    Acimovic, J., 6 Jun 2011, Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere: TICSP, (TICSP Series ; vol. 57).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. Published

    Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 20 Sep 2018.

    Research output: Other conference contributionPaper, poster or abstractScientific

  9. Published

    Neural networks, cell cultures and some older work on data analysis.

    Acimovic, J., 15 Jun 2009.

    Research output: Other conference contributionPaper, poster or abstractScientific

  10. Published

    Data-driven study of synchronous population activity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 29 Oct 2018, In : BMC Neuroscience. 19, Suppl 2, p. 68-69 1 p.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  11. Published

    TraQuMe: A tool for measuring the gaze tracking quality

    Akkil, D., Isokoski, P., Kangas, J., Rantala, J. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 327-330 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    Viability of Mouse Retinal Explant Cultures Assessed by Preservation of Functionality and Morphology

    Alarautalahti, V., Ragauskas, S., Hakkarainen, J. J., Uusitalo-Järvinen, H., Uusitalo, H., Hyttinen, J., Kalesnykas, G. & Nymark, S., 1 May 2019, In : Investigative ophthalmology & visual science. 60, 6, p. 1914-1927 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Human-robot interactive learning architecture using ontologies and symbol manipulation

    Angleraud, A., Houbre, Q., Kyrki, V. & Pieters, R., 6 Nov 2018, RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE, p. 384-389 6 p. (IEEE RO-MAN).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    Teaching semantics and skills for human-robot collaboration

    Angleraud, A., Houbre, Q. & Pieters, R., 2019, In : Paladyn. 10, 1, p. 318-329 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Elevated levels of soluble CD26 and CD30 in multiple sclerosis

    Basnyat, P., Natarajan, R., Vistbakka, J., Lehtikangas, M., Airas, L., Matinlauri, I., Elovaara, I. & Hagman, S., 1 Nov 2015, In : Clinical and Experimental Neuroimmunology. 6, 4, p. 419-425 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Association between soluble L-selectin and anti-JCV antibodies in natalizumab-treated relapsing-remitting MS patients

    Basnyat, P., Hagman, S., Kolasa, M., Koivisto, K., Verkkoniemi-Ahola, A., Airas, L. & Elovaara, I., 1 Jul 2015, In : Multiple Sclerosis and Related Disorders. 4, 4, p. 334-338 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Effect of rhodopsin phosphorylation on dark adaptation in mouse rods

    Berry, J., Frederiksen, R., Yao, Y., Nymark, S., Chen, J. & Cornwall, C., 29 Jun 2016, In : Journal of Neuroscience. 36, 26, p. 6973-6987 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge

    Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M., Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L., Nielsen, M., Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S., 1 May 2015, In : NeuroImage. 111, p. 562-579 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    A Primal Neural Network for Online Equality-Constrained Quadratic Programming

    Chen, K. & Zhang, Z., 2018, In : Cognitive Computation. 10, 2, p. 381–388 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

    Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

    Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Transfer learning using a nonparametric sparse topic model

    Faisal, A., Gillberg, J., Leen, G. & Peltonen, J., 18 Jul 2013, In : Neurocomputing. 112, p. 124-137 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Experiments of the sonification of the sleep electroencephalogram

    Franco, P. & Värri, A., 11 May 2015, In : Finnish Journal of eHealth and eWelfare. 7, 2-3, p. 65-74 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Cognitive load and metacognitive confidence extraction from pupillary response

    Gavas, R. D., Tripathy, S. R., Chatterjee, D. & Sinha, A., 1 Dec 2018, In : Cognitive Systems Research. 52, p. 325-334 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

    Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Analysis of apoptosis-related genes in patients with clinically isolated syndrome and their association with conversion to multiple sclerosis

    Hagman, S., Kolasa, M., Basnyat, P., Helminen, M., Kähönen, M., Dastidar, P., Lehtimäki, T. & Elovaara, I., 15 Mar 2015, In : JOURNAL OF NEUROIMMUNOLOGY. 280, p. 43-48 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study

    Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I., May 2011, In : JOURNAL OF NEUROIMMUNOLOGY. 234, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans

    Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J., 28 May 2014, In : JOURNAL OF CLINICAL AND EXPERIMENTAL NEUROPSYCHOLOGY. 36, 5, p. 540-550 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. E-pub ahead of print

    Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab

    He, Q., Rezaei, A. & Pursiainen, S., 2019, In : Neuroinformatics. 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Simple gaze gestures and the closure of the eyes as an interaction technique

    Heikkilä, H. & Räihä, K. J., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 147-154 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling

    Heikkinen, H., Vinberg, F., Nymark, S. & Koskelainen, A., May 2011, In : Journal of Neurophysiology. 105, 5, p. 2309-2318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Automatic assessment of the myoclonus severity from videos recorded according to standardized Unified Myoclonus Rating Scale protocol and using human pose and body movement analysis

    Hyppönen, J., Hakala, A., Annala, K., Zhang, H., Peltola, J., Mervaala, E. & Kälviäinen, R., 1 Mar 2020, In : Seizure. 76, p. 72-78 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Gaze gestures or dwell-based interaction?

    Hyrskykari, A., Istance, H. & Vickers, S., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 229-232 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Published

    MetrIntMeas a novel metric for measuring the intelligence of a swarm of cooperating agents

    Iantovics, L. B., Emmert-Streib, F. & Arik, S., 1 Oct 2017, In : Cognitive Systems Research. 45, p. 17-29 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Spinal cord injury induces widespread chronic changes in cerebral white matter

    Ilvesmäki, T., Koskinen, E., Brander, A., Luoto, T., Öhman, J. & Eskola, H., 2017, In : Human Brain Mapping. 38, 7, p. 3637-3647

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Distance-based human action recognition using optimized class representations

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Aug 2015, In : Neurocomputing. 161, p. 47-55 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    DropELM: Fast neural network regularization with Dropout and DropConnect

    Iosifidis, A., Tefas, A. & Pitas, I., 25 Aug 2015, In : Neurocomputing. 162, p. 57-66 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Regularized extreme learning machine for multi-view semi-supervised action recognition

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Dec 2014, In : Neurocomputing. 145, p. 250-262 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Extreme learning machine based supervised subspace learning

    Iosifidis, A., 2015, In : Neurocomputing. 167, p. 158–164 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Learning sparse representations for view-independent human action recognition based on fuzzy distances

    Iosifidis, A., Tefas, A. & Pitas, I., 9 Dec 2013, In : Neurocomputing. 121, p. 344-353 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    One-Class Classification based on Extreme Learning and Geometric Class Information

    Iosifidis, A., Mygdalis, V., Tefas, A. & Pitas, I., 2016, In : Neural Processing Letters. p. 1-16 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    The validity of using non-representative users in gaze communication research

    Istance, H., Vickers, S. & Hyrskykari, A., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 233-236 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters

    Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T., 1 Aug 2018, In : Neuroscience. 384, p. 214-223 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells

    Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H., 2015, In : Investigative Ophthalmology and Visual Science. 56, 11, p. 6265-6274 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI

    Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R., 29 May 2013, In : NeuroReport. 24, 8, p. 440-444 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

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