Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Effects of subsampling on characteristics of RNA‑seq data from triple‑negative breast cancer patients

    Stupnikov, A., Glazko, G. V. & Emmert-Streib, F., 8 Sep 2015, In : Chinese Journal of Cancer. 34, 10

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

    Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., Dehmer, M. & Emmert-Streib, F., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3345-3347 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Privacy as a Service: Protecting the Individual in Healthcare Data Processing

    Su, X., Hyysalo, J., Rautiainen, M., Riekki, J., Sauvola, J., Maarala, A. I., Hirvonsalo, H., Li, P. & Honko, H., 11 Nov 2016, In : Computer. 49, 11, p. 49-59 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Assessing the applicability of modular playability heuristics for evaluating health-enhancing games

    Suhonen, K. & Väätäjä, H., 2010, Proceedings of the 14th International Academic MindTrek Conference: Envisioning Future Media Environments, Tampere, Finland, 6.-8.10.2010. Lugmayr, A., Franssila, H., Sotamaa, O., Safran, C. & Aaltonen, T. (eds.). p. 147-150

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Published

    Two User Studies on Creation and Evaluation of Use Scenarios for Mixed Reality Communication

    Suhonen, K., Väänänen-Vainio-Mattila, K., Schrader, M., Pölönen, M., Salmimaa, M. & Saarikko, P., 2012, Proceedings of the International Working Conference on Advanced Visual Interfaces AVI 2012, 21-25 May, Capri Island, Italy. Tortora, G., Levialdi, S. & Tucci, M. (eds.). New York, NY: ACM, p. 588-595 (International Working Conference on Advanced Visual Interfaces).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Published

    User experiences and expectations of vibrotactile, thermal and squeeze feedback in interpersonal communication

    Suhonen, K., Väänänen-Vainio-Mattila, K. & Mäkelä, K., 2012, Proceedings of the 26th Annual BCS Interaction Specialist Group Conference on People and Computers, BCS-HCI 2012, 12th-14th, September 2012, Swinton, UK. Swinton, UK: BRITISH COMPUTER SOCIETY, p. 205-214 (British Computer Society Conference on Human-Computer Interaction).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Published

    Haptically Augmented Remote Speech Communication: A Study of User Practices and Experiences

    Suhonen, K., Müller, S., Rantala, J., Väänänen-Vainio-Mattila, K., Raisamo, R. & Lantz, V., 2012, Proceedings of the 7th Nordic Conference on Human-Computer Interaction, NordiCHI 2012, October 14-17, 2012, Copenhagen, Denmark. New York, NY: ACM, p. 361-369 (Nordic Conference on Human-Computer Interaction).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. Published

    #JeSuisCharlie: Towards a Multi-Method Study of Hybrid Media Events

    Sumiala, J., Tikka, M., Huhtamäki, J. & Valaskivi, K., 2016, In : MEDIA AND COMMUNICATION. 4, 4, p. 97-108

    Research output: Contribution to journalArticleScientificpeer-review

  9. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  10. Vasculogenic mimicry is associated with high tumor grade, invasion and metastasis, and shor survival in patients with hepatocellular carcinoma

    Sun, B. C., Zhang, S. W., Zhang, D. F., Du, J., Guo, H., Hao, X. L., Zhang, W. & Hao, X. S., 2006, In : Oncology Report. 16, 4, p. 693-698

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Application for pre-processing and visualization of electrodermal activity wearable data

    Suoja, K., Liukkonen, J., Jussila, J., Salonius, H., Venho, N., Sillanpää, V., Vuori, V. & Helander, N., 2018, EMBEC and NBC 2017 - Joint Conference of the European Medical and Biological Engineering Conference EMBEC 2017 and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2017. Springer Verlag, p. 93-96 (IFMBE Proceedings; vol. 65).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    On the applicability of capability models for small software organizations: does the use of standard processes lead to a better achievement of business goals?

    Suominen, M. & Mäkinen, T., 2013, In : Software Quality Journal. 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Transform domain similarity measures in stereo matching

    Suominen, O., Gotchev, A. & Hannuksela, M., 2012, 3DTV-Conference: The True Vision - Capture, Transmission and Display of 3D Video, 2012, October 15 - 17, Zurich, Switzerland. Piscataway, NJ: Institute of Electrical and Electronics Engineers IEEE, p. 1-4 4 p. (3DTV-Conference - The True Vision Capture, Transmission and Display of 3D Video (3DTV-CON)).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    Kokemuksen jaetut tilat, näkökulmia yhteisöllisyyteen ja vuorovaikutukseen

    Suominen, J. (ed.), Multisilta, J. (ed.), Viteli, J. (ed.), Friman, U. (ed.), Tawast, P. (ed.), Stenfors, L. (ed.), Jurvela, H. (ed.) & Perttula, A. (ed.), 2011, Turku: TURUN YLIOPISTO. (Turun yliopisto. Kulttuurituotannon ja maisemantutkimuksen koulutusohjelman julkaisuja; vol. 32)

    Research output: Book/ReportAnthologyScientificpeer-review

  15. Published

    Circular Trajectory Correspondences for Iterative Closest Point Registration

    Suominen, O. & Gotchev, A., 2013, 3DTV-Conference: The True Vision-Capture, Transmission and Display of 3D Video (3DTV-CON), Aberdeen, UK, October 7-8, 2013. Piscataway: Institute of Electrical and Electronics Engineers IEEE, p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  16. Published

    Implementation of Depth Map Filtering Algorithms on Mobile-Specific Platforms

    Suominen, O., Sen, S., Smirnov, S. & Gotchev, A., 2012, 2012 IEEE International Conference on Consumer Electronics, ICCE, 13 - 16 January, Las Vegas, USA. Piscataway, NJ: Institute of Electrical and Electronics Engineers IEEE, p. 315-318 (International Conference on Consumer Electronics).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  17. Published

    Preserving natural scene lighting by strobe-lit video

    Suominen, O. & Gotchev, A., 2015, Image Processing: Algorithms and Systems XIII. SPIE, 939919. (SPIE Conference Proceedings; vol. 9399).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  18. Published

    Efficient Cost Volume Sampling for Plane Sweeping Based Multiview Depth Estimation

    Suominen, O. & Gotchev, A., 27 Sep 2015, 2015 IEEE International Conference on Image Processing (ICIP). IEEE, p. 1075-1079 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Published

    Are Software Start-Ups Different? An empirical study on performance of Finnish software companies

    Suominen, A., Hyrynsalmi, S., Aarikka-Stenroos, L. & Seppänen, M., 27 Jun 2017, 2017 International Conference on Engineering, Technology and Innovation (ICE/ITMC). IEEE, p. 991-996

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Published

    Software Start-up Failure: An exploratory study on the impact of investment

    Suominen, A., Hyrynsalmi, S., Seppänen, M., Still, K. & Aarikka-Stenroos, L., 30 Nov 2017, Proceedings of 9th International Workshop on Software Ecosystems. CEUR-WS.org, p. 55-64 10 p. (CEUR workshop proceedings; vol. 2053).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Published

    Collaborative Writing and Knowledge Creation in a Social Media Online Community

    Suominen, A. & Jussila, J., 17 Nov 2018, The Future of Innovation and Technology in Education: Policies and Practices for Teaching and Learning Excellence (Emerald Studies in Higher Education, Innovation and Technology). Visvizi, A., Lytras, M. D. & Daniela, L. (eds.). Emerald Group Publishing Ltd., p. 95-109 15 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  22. Published

    World Heritage meets Smart City in an Urban- Educational Hackathon in Rauma

    Suominen, A. H., Halvari, S. & Jussila, J., 30 Sep 2019, In : Technology Innovation Management Review. 9, 9, p. 44-63 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Depth Resolution of 3D Imaging Techniques for Target Detection in Mobile Work Machines

    Suominen, O. J., Goncalves Ribeiro, L. & Gotchev, A., 17 Oct 2019, 2019 11th International Symposium on Image and Signal Processing and Analysis (ISPA). IEEE, p. 295-300 6 p. (International Symposium on Image and Signal Processing and Analysis).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    Collecting usage data for software development: Selection framework for technological approaches

    Suonsyrjä, S., Systä, K., Mikkonen, T. & Terho, H., 2016, Proceedings - SEKE 2016: 28th International Conference on Software Engineering and Knowledge Engineering. Knowledge Systems Institute Graduate School, p. 114-119 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Published

    Post-deployment data: A recipe for satisfying knowledge needs in software development?

    Suonsyrjä, S., Hokkanen, L., Terho, H., Systä, K. & Mikkonen, T., 6 Jan 2017, 2016 Joint Conference of the International Workshop on Software Measurement and the International Conference on Software Process and Product Measurement (IWSM-MENSURA). IEEE, p. 139-147 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Eeny, Meeny, Miny, Mo…: A multiple case study on selecting a technique for user-interaction data collecting

    Suonsyrjä, S., 2017, Agile Processes in Software Engineering and Extreme Programming - 18th International Conference, XP 2017, Proceedings. Springer Verlag, p. 52-67 16 p. (Lecture Notes in Business Information Processing; vol. 283).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Published

    Objectives and Challenges of the Utilization of User-Interaction Data in Software Development

    Suonsyrjä, S., Sievi-Korte, O., Systä, K., Kilamo, T. & Mikkonen, T., 29 Aug 2018, Euromicro Conference on Software Engineering and Advanced Applications, SEAA 2018. IEEE, p. 357-361 5 p. ( Euromicro Conference on Software Engineering and Advanced Applications).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Published

    Data-Driven Software Development with User-Interaction Data

    Suonsyrjä, S., 26 Jun 2019, Tampere University. 59 p. (Tampere University Dissertations; vol. 84)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  29. Published

    Initiating quality management in a small software enterprise

    Suula, M., Mäkinen, T. & Varkoi, T., 2010, 17th Eurospi2 Conference, Industrial Proceedings, 1.-3. September 2010, Grenoble Institute of Technology, France. Messnarz, R. (ed.). p. 8.1-8.12 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Published

    Evolution of open source software projects: A systematic literature review

    Syeed, M. M. M., Hammouda, I. & Systä, T., 2013, In : Journal of Software. 8, 11, p. 2815-2829 15 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  31. Published

    Exploring Socio-Technical Dependencies in Open Source Software Projects: Towards an Automated Data-driven Approach

    Syeed, M. M. M., Hammouda, I. & Berko, C., 2013, 17th International Academic MindTrek Conference, October 1-4, 2013, Tampere, Finland. New York, NY: ACM, p. 273-280 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Published

    Tool Assisted Analysis of Open Source Projects: A Multi-faceted Challenge

    Syeed, M. M. M., Aaltonen, T., Hammouda, I. & Systä, T., 2011, In : International Journal of Open Source Software and Processes. 3, 2, p. 43-78

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Open Source Prediction Methods: A Systematic Literature Review

    Syeed, M. M. M., Kilamo, T., Hammouda, I. & Systä, T., 2012, 8th IFIP WG 2.13 International Conference, OSS 2012, Hammamet, Tunisia, September 10-13, 2012. IFIP Advances in Information and Communication. Berlin, Heidelberg: Springer, p. 280-285 (IFIP WG 2.13 International Conference; vol. 378).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Binoculars: Comprehending Open Source Projects through Graphs

    Syeed, M. M. M., 2012, 8th IFIP WG 2.13 International Conference, OSS 2012, Hammamet, Tunisia, September 10-13, 2012. IFIP Advances in Information and Communication. Berlin, Heidelberg: Springer, p. 350-355 (IFIP WG 2.13 International Conference; vol. 378).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Published

    On the Socio-Technical Dependencies in Free/Libre/Open Source Software Projects

    Syeed, M. M. M., 29 May 2015, Tampere University of Technology. (Tampere University of Technology. Publication; vol. 1300)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  36. Published

    Pluggable Systems as Architectural Pattern: An Ecosystemability Perspective

    Syeed, M. M. M., Lokhman, A., Mikkonen, T. & Hammouda, I., 2015, ECSAW '15 Proceedings of the 2015 European Conference on Software Architecture Workshops. ACM, 42

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Published

    Prediction models and techniques for Open Source Software projects: A systematic literature review

    Syeed, M. M. M., Hammouda, I. & Systä, T., 1 Apr 2014, In : International Journal of Open Source Software and Processes. 5, 2, p. 1-39 39 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. A single-gene biomarker identifies breast cancers associated with immature cell type and short duration of prior breastfeeding

    Symmans, W. F., Fiterman, D. J., Anderson, S. K., Ayers, M., Rouzier, R., Dunmire, C., Stec, J., Valero, V., Sneige, N., Albarracin, C., Wu, Y., Ross, J. S., Wagner, P., Theriault, R. L., Arun, B., Kuerer, H., Hess, K. R., Zhang, W., Hortobagyi, G. N. & Pusztai, L., 2005, In : Endocrine-Related Cancer. 12, p. 1059-1069

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Analyzing Traffic Fluency from Bus Data

    Syrjärinne, P., Nummenmaa, J., Thanisch, P., Kerminen, R. & Hakulinen, E., 2014, 10th ITS European Congress, Helsinki, Finland, 16-19.6.2014. Helsinki: ERTICO, p. 1-12 12 p. SP 0016

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  40. Published

    Analysing traffic fluency from bus data

    Syrjärinne, P., Nummenmaa, J., Thanisch, P., Kerminen, R. & Hakulinen, E., 1 Aug 2015, In : IET Intelligent Transport Systems. 9, 6, p. 566-572 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    A pattern-based approach to manage model references

    Systä, T. & Jiang, J., 2009, In : EASST Electronic Communications. 21, p. 10

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Piiri pieni pyörii

    Systä, T., Harsu, M. & Koskimies, K., 2010, In : Tietojenkäsittelytiede. 31, p. 10-21

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Project types and industrial collaboration in project-based learning

    Systä, K., Vuori, M., Järvinen, H-M., Ahtee, T. & Sten, H., 12 Nov 2016, Proceedings of SEFI 2016 annual conference. Järvinen, H-M. & Clark, R. (eds.). Tampere / Brussels: European Society for Engineering Education SEFI, 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Published

    Obituary: Professor Paul Dan Cristea

    Tabus, II., Serpedin, E. & Astola, J., 2013, In : Eurasip Journal on Bioinformatics and Systems Biology. 2013, 1, p. 1-2 2 p., 7.

    Research output: Contribution to journalArticleScientific

  45. Published

    Patch-Based Conditional Context Coding of Stereo Disparity Images

    Tabus, I., 2014, In : IEEE Signal Processing Letters. 21, 10, p. 1220-1224 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Fast search on the shells of Golay codes

    Tabus, I., Seppänen, M. & Vasilache, A., 2010, Proceedings of the 4th International Symposium on Communication, Control and Signal Processing, ISCCSP 2010, Limassol, Cyprus, 3-5 March 2010. p. 1-6 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Published

    Maximizing the lifetime of energy constrained wireless sensor networks having tree topology

    Tabus, V. & Astola, J., 2014, 6th International Symposium on Communications, Control and Signal Processing (ISCCSP); Location: Athens, Greece; Date: May 21-23, 2014. p. 388-391 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Optimal structure of memory models for lossless compression of binary image contours

    Tabus, I. & Sarbu, S., 2011, Proceedings of 36th IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2011, 22-27 May 2011, Prague, Czech Republic. Piscataway, NJ: IEEE, p. 809-812 5946527. (IEEE International Conference on Acoustics, Speech and Signal Processing ICASSP).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Published

    Sequence Alignment and Clustering Based on MDL and Normalized Maximum Likelihood Models

    Tabus, I. & Astola, J. T., 2011, Proceedings of 2nd International Workshop on Genomic Signal Processing GPS 2011, June 26-29, 2011, Bucharest, Romania. Cristea, P. D. (ed.). Bucharest: GPS 2011, p. 53-59 (International Workshop on Genomic Signal Processing GPS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Published

    Two-Phase Compression of Histological Images with MDL Ranking of Segmentation Images

    Tabus, I., Hukkanen, J. & Schiopu, I., 2013, 19th International Conference on Control Systems and Computer Science, 29-31 May 2013, Bucharest, Romania. IEEE Computer Society, p. 331-338 8 p. (International Conference on Control Systems and Computer Science).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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