Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Detecting Sequence Dependent Transcriptional Pauses from RNA and Protein Number Time Series

    Emmert-Streib, F., Häkkinen, A. & Ribeiro, A. S., 2012, In : BMC Bioinformatics. 13, p. 1-20 20 p., 152.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Optimize observational time points to maximize the inferability of gene networks

    Emmert-Streib, F. & Ribeiro, A., 2008, Proceedings of International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, Las Vegas, USA, 14-17 July 2008. Arabnia, H. R. (ed.). p. 55-60

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  3. Published

    Computational Network Theory: Theoretical Foundations and Applications

    Emmert-Streib, F. (ed.), Dehmer, M. (ed.) & Pickl, S. (ed.), 2015, John Wiley and Sons. (Quantitative and Network Biology; vol. 5)

    Research output: Book/ReportAnthologyScientificpeer-review

  4. Published

    Biological networks: the microscope of the twenty-first century?

    Emmert-Streib, F. & Dehmer, M., 2015, In : Frontiers in Genetics. 6

    Research output: Contribution to journalArticleScientific

  5. Published

    The Process of Analyzing Data is the Emergent Feature of Data Science

    Emmert-Streib, F., Moutari, S. & Dehmer, M., 2016, In : Frontiers in Genetics. 7, p. 12

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Fifty years of graph matching, network alignment and network comparison

    Emmert-Streib, F., Dehmer, M. & Shi, Y., 10 Jun 2016, In : Information Sciences. 346-347, p. 180-197 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    The need for formally defining "modern medicine" by means of experimental design

    Emmert-Streib, F., Tuomisto, L. & Yli-Harja, O., 20 Apr 2016, In : Frontiers in Genetics. 7, APR, 60.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Against dataism and for data sharing of big biomedical and clinical data with research parasites

    Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 31 Aug 2016, In : Frontiers in Genetics. 7, AUG, 154.

    Research output: Contribution to journalComment/debateScientificpeer-review

  9. Published

    A comprehensive survey of error measures for evaluating binary decision making in data science

    Emmert-Streib, F., Moutari, S. & Dehmer, M., 8 Feb 2019, In : Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 9, 5, p. e1303

    Research output: Contribution to journalReview ArticleScientificpeer-review

  10. Published

    Introduction to Survival Analysis in Practice

    Emmert-Streib, F. & Dehmer, M., 8 Sep 2019, In : Machine Learning and Knowledge Extraction. 1, 3, p. 1013-1038

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Understanding Statistical Hypothesis Testing: The Logic of Statistical Inference

    Emmert-Streib, F. & Dehmer, M., 12 Aug 2019, In : Machine Learning and Knowledge Extraction. 1, 3, p. 945-962

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Large-Scale Simultaneous Inference with Hypothesis Testing: Multiple Testing Procedures in Practice

    Emmert-Streib, F. & Dehmer, M., 15 May 2019, In : Machine Learning and Knowledge Extraction. 1, 2, p. 653-683

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Evaluation of Regression Models: Model Assessment, Model Selection and Generalization Error

    Emmert-Streib, F. & Dehmer, M., 22 Mar 2019, In : Machine Learning and Knowledge Extraction. 1, 1, p. 521-551

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    High-Dimensional LASSO-Based Computational Regression Models: Regularization, Shrinkage, and Selection

    Emmert-Streib, F. & Dehmer, M., 14 Jan 2019, In : Machine Learning and Knowledge Extraction. 1, 1, p. 359-383

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology: A Cooperative Service Model

    Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 17 Dec 2019, In : Frontiers in cell and developmental biology. 7, 349.

    Research output: Contribution to journalArticleScientificpeer-review

  16. E-pub ahead of print

    Explainable artificial intelligence and machine learning: A reality rooted perspective

    Emmert-Streib, F., Yli-Harja, O. & Dehmer, M., 2020, In : Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery. 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Evaluation of depth compression and view synthesis distortions in multiview-video-plus-depth coding systems

    El-Yamany, A. N., Ugur, K., Hannuksela, M. M. & Gabbouj, M., 2010, Proceedings of 3DTV-Conference: The True Vision - Capture, Transmission and Display of 3D Video (3DTV-CON), 2010, Tampere, Finland, June 7-9, 2010. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  18. Published

    Fault tolerance patterns for distributed machine control systems

    Eloranta, V-P. & Koskinen, J., 2010, 15th European Conference on Pattern Languages of Programs EuroPLoP 2010, July 7-11, 2010, Irsee Monastery, Germany. p. 17 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Published

    A pattern language for distributed machine control systems

    Eloranta, V-P., Koskinen, J., Leppänen, M. & Reijonen, V., 2010, Tampere: Tampere University of Technology. 106 p. (Tampereen teknillinen yliopisto. Ohjelmistotekniikka.; vol. 9)

    Research output: Book/ReportCommissioned reportProfessional

  20. Published

    Messaging Patterns for Distributed Machine Control Systems

    Eloranta, V-P. & Koskinen, J., 2011, Proceedings of the 16th European Conference on Pattern Languages of Programs EuroPLoP 2011, July 13-17, Irsee, Germany. ACM, p. 1-18 18 p. (European Conference on Pattern Languages of Programs).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Published

    Human Machine Interface Patterns For Distributed Machine Control Systems

    Eloranta, V-P. & Leppänen, M., 2012, 17th European Conference on Pattern Languages of Programs, EuroPLoP 2012, Kloster Irsee, Germany, July 11-15, 2012. Munich, Germany: Hillside Europe, p. 79-96 18 p. (European Conference on Pattern Languages of Programs).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Published

    Sulava Scrum Survey Report

    Eloranta, V-P. & Koskimies, K., 2011, Tampere: Tampereen teknillinen yliopisto. 28 p. (Tampere University of Technology. Department of Software Systems. Report; vol. 17)

    Research output: Book/ReportCommissioned reportProfessional

  23. Published

    TopDocs: Using Software Architecture Knowledge Base for Generating Topical Documents

    Eloranta, V-P., Hylli, O., Vepsäläinen, T. & Koskimies, K., 2012, Software Architecture WICSA and European Conference on Software Architecture ECSA, 2012 Joint Working IEEE/IFIP Conference, Helsinki, Finland, August 20-24, 2012. Piscataway, NJ: Institute of Electrical and Electronics Engineers IEEE, p. 191-195 6337717. (Working IEEE/IFIP Conference on Software Architecture).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    Aligning architecture knowledge management with Scrum

    Eloranta, V-P. & Koskimies, K., 2012, Proceedings of the WICSA/ECSA 2012 Companion Volume, August 20-24, 2012, Helsinki. New York, NY: Association for Computing Macinery ACM, p. 112-115 4 p. (Working IEEE/IFIP Conference on Software Architecture & European Conference on Software Architecture).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Published

    Software Architecture Practices in Agile Enterprises

    Eloranta, V-P. & Koskimies, K., 2013, Aligning Enterprise, System, and Software Architectures. Mistrik, I., Tang, A., Bahsoon, R. & Stafford, J. A. (eds.). Hershey, PA: IGI Global, p. 230-249 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  26. Published

    Using domain knowledge to boost software architecture evaluation

    Eloranta, V-P. & Koskimies, K., 2010, In : Lecture Notes in Computer Science. 6285, p. 319-326

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Techniques and Practices for Software Architecture Work in Agile Software Development

    Eloranta, V-P., 8 May 2015, Tampere University of Technology. 153 p. (Tampere University of Technology. Publication; vol. 1293)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  28. Published

    Patterns for controlling chaos in a startup

    Eloranta, V-P., 10 Apr 2014, VikingPLoP 2014 Proceedings of the 8th Nordic Conference on Pattern Languages of Programs. Association for Computing Machinery, Vol. 2014-April. p. 1-8 8 p. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    To UML or not to UML? – Empirical Study on the Approachability of Software Architecture Diagrams

    Eloranta, V-P., Isohanni, E., Lahtinen, S. & Sievi-Korte, O., 2015, Proceedings of the ASWEC 2015 24th Australasian Software Engineering Conference (ASWEC ' 15 Vol. II). New York, NY, USA: ACM, p. 101-105 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Published

    Lightweight Evaluation of Software Architecture Decisions

    Eloranta, V-P., van Heesch, U., Avgeriou, P., Harrison, N. & Koskimies, K., 25 Jul 2014, Relating System Quality and Software Architecture. Elsevier, p. 157-179 23 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  31. Published

    Chapter 8 - Lightweight Architecture Knowledge Management for Agile Software Development

    Eloranta, V-P. & Koskimies, K., 2014, Agile Software Architecture: Aligning Agile Processes and Software Architectures. Babar, M. A., Brown, A. W. & Mistrik, I. (eds.). MORGAN KAUFMANN PUBLISHERS, p. 189-213 25 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  32. Published

    Patterns for Distributed Machine Control Systems

    Eloranta, V-P. & Leppänen, M., 2015, EuroPLoP '13 Proceedings of the 18th European Conference on Pattern Languages of Program . New York, NY, USA: ACM, 6

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Published

    Towards a Pattern Language for Software Start-ups

    Eloranta, V-P., 2014, Proceedings of the 19th European Conference on Pattern Languages of Programs. New York, NY, USA: ACM, p. 24:1-24:11 11 p. (EuroPLoP '14).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Exploring ScrumBut—An empirical study of Scrum anti-patterns

    Eloranta, V-P., Koskimies, K. & Mikkonen, T., 2016, In : Information and Software Technology. 74, p. 194-203 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Discovery Science 14th International Conference, DS 2011, Espoo, Finland, October 5-7, 2011. Proceedings

    Elomaa, T. (ed.), Hollmen, J. (ed.) & Mannila, H. (ed.), 2011, Heidelberg: Springer. (Lecture Notes in Computer Science; vol. 6926)

    Research output: Book/ReportAnthologyScientificpeer-review

  36. Published

    Covering analysis of the greedy algorithm for partial cover

    Elomaa, T. & Kujala, J., 2010, Algorithms and Applications Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday. Elomaa, T., Mannila, H. & Orponen, P. (eds.). Heidelberg: Springer, p. 102-113 12 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  37. Published

    Algorithms and Applications Algorithms and Applications: Essays Dedicated to Esko Ukkonen on the Occasion of His 60th Birthday

    Elomaa, T. (ed.), Mannila, H. (ed.) & Orponen, P. (ed.), 2010, Heidelberg: Springer. (Lecture Notes in Computer Science; vol. 6060)

    Research output: Book/ReportAnthologyScientificpeer-review

  38. Published

    Special Issue on Data Analysis Methodologies for Intelligent Systems: guest editor's introduction

    Elomaa, T., Berka, P. & Rauch, J., 2011, Unknown Publisher. (Journal of Intelligent Information Systems; vol. 37, no. 3)

    Research output: Book/ReportAnthologyScientificpeer-review

  39. Published

    Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming

    Elo, L. L., Järvenpää, H., Tuomela, S., Raghav, S., Ahlfors, H., Laurila, K., Gupta, B., Lund, R. J., Tahvanainen, J., Hawkins, R. D., Oresic, M., Lähdesmäki, H., Rasool, O., Rao, K. V., Aittokallio, T. & Lahesmaa, R., 2010, In : Immunity. 32, 6, p. 852-862

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Diffusion of innovation: Case of co-design of cabins in mobile work machine industry

    Ellman, A. & Tiainen, T., 1 Jun 2019, In : Computers. 8, 2, 39.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    An HMM-based spectrum access algorithm for cognitive radio systems

    El Din, M. S., El-Tarhuni, M., Assaleh, K. & Kiranyaz, S., 14 Jul 2015, 2015 International Conference on Information and Communication Technology Research, ICTRC 2015. The Institute of Electrical and Electronics Engineers, Inc., p. 116-119 4 p. 7156435

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  42. Published

    Pushing the Limits beyond Catalogue Raisonnée: Step 1. Identifying digitalization challenges in museums

    Ekosaari, M. & Pekkola, S., 8 Jan 2019, Proceedings of the 52nd Hawaii International Conference on System Sciences. Hawaii International Conference on System Sciences, 10 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. Published

    Network behaviour anomaly detection using Holt-Winters algorithm

    Ekberg, J., Ylinen, J. & Loula, P., 2011, 6th International Conference on Internet Technology and Secured Transactions, 11-14 December 2011, Abu Dhabi, United Arab Emirates. Piscataway, NJ: IEEE, p. 627-631 (International Conference on Internet Technology and Secured Transactions).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Published

    On the Complexity of Rainbow Coloring Problems

    Eiben, E., Ganian, R. & Lauri, J., 20 Feb 2016, Combinatorial Algorithms: 26th International Workshop, IWOCA 2015, Verona, Italy, October 5-7, 2015, Revised Selected Papers. Lipták, Z. & Smyth, W. F. (eds.). Springer International Publishing, p. 209-220 12 p. (Lecture Notes in Computer Science; vol. 9538).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Published

    BM3D

    Egiazarian, K., 2012, In : Public Service Review. 24, p. 511-511

    Research output: Contribution to journalArticleProfessional

  46. Published

    Spline-based image interpolators and decimators: Design and efficient implementation

    Egiazarian, K. & Gotchev, A., 2010, Proceedings of the 8th Conference of Open Innovations Framework Program FRUCT, Lappeenranta, Finland, 9-12 November, 2010. p. 49-52

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  47. Published

    Image Processing: Algorithms and Systems XIII

    Egiazarian, K. (ed.), Agaian, S. (ed.) & Gotchev, A. (ed.), Apr 2015, SPIE. (SPIE conference proceedings; vol. 9399)

    Research output: Book/ReportAnthologyScientificpeer-review

  48. Published

    Image Processing: Algorithms and Systems XII

    Egiazarian, K. (ed.), Agaian, S. (ed.) & Gotchev, A. (ed.), 1 Mar 2014, SPIE. (SPIE conference proceedings; vol. 9019)

    Research output: Book/ReportAnthologyScientificpeer-review

  49. Published

    Single image super-resolution via BM3D sparse coding

    Egiazarian, K. & Katkovnik, V., 1 Aug 2015, 2015 23rd European Signal Processing Conference (EUSIPCO). IEEE, p. 2849-2853 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Published

    BM3D-HVS: Content-Adaptive denoising for improved visual quality

    Egiazarian, K., Danielyan, A., Ponomarenkoa, N., Foia, A., Ieremeiev, O. & Lukin, V., 2017, Image Processing: Algorithms and Systems XV. p. 48-55 8 p. (Electronic Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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