Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 1999
  2. Published

    On noise reduction in iterative image reconstruction algorithms for emission tomography: median root prior

    Alenius, S., 1999, Tampere University of Technology. 74 p. (Tampere University of Technology. Publications; vol. 265)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  3. 2000
  4. Iterative reconstruction method based on median root prior in quantification with PET

    Katoh, C., Alenius, S. & Ruotsalainen, U., 2000, Positron Emission Tomography in the Millennium. Tamaki, N., Tsukamoto, E., Kuge, Y., Katoh, C. & Morita, K. (eds.). Amsterdam: Elsevier Science Publishers B.V., p. 265-270 6 p. (INTERNATIONAL CONGRESS SERIES; vol. 1197).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Cerebral glucose metabolism in survivors of childhood acute lymphoblastic leukemia

    Kahkonen, M., Metsahonkala, L., Minn, H., Utriainen, T., Korhonen, T., Norvasuo-Heila, MK., Harila-Saari, A., Aarimaa, T., Suhonen-Polvi, H., Ruotsalainen, U., Solin, O. & Salmi, TT., 1 Feb 2000, In : Cancer. 88, 3, p. 693-700 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2003
  7. Published

    MUVIS: A Content-based multimedia indexing and retrieval framework

    Kiranyaz, S., Caglar, K., Guldogan, E., Guldogan, O. & Gabbouj, M., 2003, Proceedings of the Third International Workshop on Content-Based Multimedia Indexing, CBMI 2003, Rennes, France, 22-24 September 2003. INRIA, p. 405-412

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. 2005
  9. Published

    A&O - Virtual learning environment

    Ala-Rantala, M., Levasma, J., Mäkelä, T., Nykänen, O., Pohjanen, L., Pohjolainen, S., Ruokamo, H., Salonen, J. & Silius, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  10. Alterations in transcription clusters underlie development of bladder cancer along papillary and non-papillary pathways

    Kim, J-H., Tuziak, T., Hu, L., Gold, D., Wang, Z., Bondaruk, J., Fuller, G. N., Dinney, C., Grossman, H. B., Baggerly, K., Zhang, W. & Czerniak, B., 2005, In : Laboratory Investigation. 85, 4, p. 532-549

    Research output: Contribution to journalArticleScientificpeer-review

  11. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms

    Hu, J., Kapoor, M., Zhang, W., Hamilton, S. R. & Coombes, K., 2005, In : Bioinformatics. 21, 17, p. 3524-3529

    Research output: Contribution to journalArticleScientificpeer-review

  12. Androgen receptor modifications in prostate cancer cells upon long-term androgen ablation and antiandrogen treatment

    Marques, R. B., Erkens-Schulze, S., de Ridder, C. M., Hermans, K. G., Waltering, K., Visakorpi, T., Trapman, J., Romijn, J. C., van Weerden, W. M. & Jenster, G., 2005, In : International Journal of Cancer. 117, 2, p. 221-229

    Research output: Contribution to journalArticleScientificpeer-review

  13. A single-gene biomarker identifies breast cancers associated with immature cell type and short duration of prior breastfeeding

    Symmans, W. F., Fiterman, D. J., Anderson, S. K., Ayers, M., Rouzier, R., Dunmire, C., Stec, J., Valero, V., Sneige, N., Albarracin, C., Wu, Y., Ross, J. S., Wagner, P., Theriault, R. L., Arun, B., Kuerer, H., Hess, K. R., Zhang, W., Hortobagyi, G. N. & Pusztai, L., 2005, In : Endocrine-Related Cancer. 12, p. 1059-1069

    Research output: Contribution to journalArticleScientificpeer-review

  14. Attenuated expression of DFFB is a hallmark of oligodendrogrliomas with 1p-allelic loss

    McDonald, J. M., Dunmire, C., Cogdell, D., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2005, In : Molecular Cancer. 4, 35, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Basis for tool support for product-line processes

    Harsu, M. & Peltonen, J., 2005, Tampere: Tampere University of Technology. 43 p. (Tampere University of Technology. Institute of Software Systems. Report; vol. 38)

    Research output: Book/ReportCommissioned reportProfessional

  16. Combination of 5-fluorouracil and N1-acetyltransferase expression, depletes polyamines, and synergistically induces apoptosis in colon carcinoma cells

    Choi, W., Gerner, E., Ramadas, L., Dupart, J., Carew, J., Huang, P., Zhang, W. & Hamilton, S. R., 2005, In : Journal of Biological Chemistry. 280, 5, p. 3295-3304

    Research output: Contribution to journalArticleScientificpeer-review

  17. Constitutive activation of JAK3/STAT3 in colon carcinoma tumors and cell lines: inhibition of JAK3/STAT3 signaling induces apoptosis and cell cycle arrest of colon carcinoma

    Lin, Q., Lai, R., Li, C., Chirieac, L. R., Grammatikakis, I., Thomazy, V. A., Rassidakis, G. Z., Zhang, W., Fujio, Y., Kunisada, K., Hamilton, S. R. & Amin, H. M., 2005, In : American Journal of Pathology. 167, 4, p. 969-980

    Research output: Contribution to journalArticleScientificpeer-review

  18. Effects of lattice structure in the dynamics of coupled elements

    S. Ribeiro, A. & Lind, P. G., 2005, In : Physica Scripta. T118, p. 165-167

    Research output: Contribution to journalArticleScientificpeer-review

  19. Elevated expressions of p21 (WAFI/Cip1) in hormonally active pituitary adenomas

    Neto, A. G., McCutcheon, I. E., Vang, R., Spencer, M. L., Zhang, W. & Fuller, G. N., 2005, In : Annals of Diagnostic Pathology. 9, p. 6-10

    Research output: Contribution to journalArticleScientificpeer-review

  20. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2005, Proceedings of Hawaii International Conference on System Sciences, 3.-6.12.2005, Hawaii. p. p. 218

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Evaluation of disparity map characteristics for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of IEEE International Conference on Image Processing, ICIP 2005, Genoca, Italy, 11-14 September 2005. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Expression of CD29 on lymphoma cells and/or CD36 on microvascular endothels correlates with high serum LDH level in diffuse large B-cell lymphomas (DLBSLs) and is frequent in de novo CD5-positive DLBCLs

    Ueno, S., Yamaguchi, M., Kimura, M., Odagiri, H., Shiraki, K., Uemoto, S., Nakamura, N., Zhang, W., Shiku, H. & Kobayashi, T., 2005, In : International Journal of Oncology. 27, 5, p. 1241-1246

    Research output: Contribution to journalArticleScientificpeer-review

  23. Human orientation in Scandinavian IS research as it appears in SJIS

    Koaskinen, M., Liimatainen, K. & Pekkola, S., 2005, Proceedings of the 28th Information Systems Research Seminar in Scandinavia, IRIS'28, Kristiansand, Norway, August 6-9, 2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Imatinib mesylate: targeted therapy of gastrointestinal stromal tumor

    Trent, J., Dupart, J. & Zhang, W., 2005, In : Current Cancer Therapy Reviews. 1, p. 93-108 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Inactivation of the invasion inhibitory protein gene IIp45 by alternative splicing in gliomas

    Song, S. W., Fuller, G. N., Zheng, H. & Zhang, W., 2005, In : Clinical Cancer Research. 65, p. 3562-3567

    Research output: Contribution to journalArticleScientificpeer-review

  26. Kognitiivisen verkkopedagogiikan erityiskysymyksiä

    Niemelä, M., Pekkola, S. & Wahlstedt, A., 2005, Kognitiivisen verkkopedagogiikan erityiskysymyksiä. Marttunen, M. & Marjomaa, E. (eds.). Joensuu University Press, p. 18-33

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  27. Published

    Matematiikkajumppa - Automatically generated STACK exercises in Mathematics Remedial Instruction

    Kangas, J., Miilumäki, T., Mäkelä, T., Pohjolainen, S., Rautiainen, E., Turunen, E. & Vattulainen, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  28. Nuances of human-centredness in information systems development

    Isomäki, H. & Pekkola, S., 2005, Proceedings of the Annual Hawaii International Conference on System Sciences, 3-6 January 2005, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    Opiskelijan myyttiset 1 600 tuntia

    Valmari, A., 2005, In : Tietojenkäsittelytiede. 24, p. 4-7

    Research output: Contribution to journalArticleScientificpeer-review

  30. Overexpression of tropomysin-related kinase B in metastatick human pancreatic cancer cells

    Sclabas, G. M., Frederick, W. A. I., Fujioka, S., Schmidt, C., Yang, W., Yokoi, K., Evans, D. B., Denny, A., Abbruzzese, J., Hess, K. R., Zhang, W., Fidler, I. J. & Chiao, P., 2005, In : Clinical Cancer Research. 11, p. 440-449

    Research output: Contribution to journalArticleScientificpeer-review

  31. Reflective user in practice: Explorations from two cases

    Pekkola, S., 2005, International reports on socio-informatics. Dittrich, Y., Dourish, P., Morch, A., Pipek, V., Stevens, G. & Törpel, B. (eds.). p. 94-98

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  32. Published

    Specifying UML Profile for Distributed Communicating Systems and Communication Protocols

    Leppänen, S., Ilic, D., Malik, Q., Systä, T. & Troubitsyna, E., 2005, Workshop Proceedings, 2005 ECMDA, European Conference on Model Driven Architecture, Workshop on "Consistency in Model Driven Engineering" - C@MoDE, November 7th, 2005, Nuremberg, Germany. p. 16 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. The prognostic impact of histology and 1p/19q status in anaplastic oligodendroglial tumors

    McDonald, J. M., See, S., Tremont, I., Colman, H., Gilbert, M., Groves, M., Burger, P., Louis, D. N., Giannini, C., Fuller, G. N., Passe, S., Blair, H., jenkins, R. B., Yang, H., Ledoux, A., Tipnis, U., Zhang, W., Hess, K. & Aldape, K., 2005, In : Cancer. 104, 7, p. 1468-1477

    Research output: Contribution to journalArticleScientificpeer-review

  34. The signaling network of tumor invasion

    Wang, G. K. & Zhang, W., 2005, In : Histology and Histopathology. 20, p. 593-602

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    TOIVO-osaamiskartoitusväline: Verkkopalvelu työnhakijoiden osaamisen kartoittamiseen

    Häkkinen, P., Silius, K., Tervakari, A-M. & Vilen, J., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  36. Using disparity map compensation for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of the IEEE 13th Signal Processing, Communication and Applications Conference, SIU 2005, Kayseri, Turkey, May 2005. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Published

    Verkkopalvelun käyttökelpoisuuden arvioiminen -oppimateriaali: Tampereen teknillinen yliopisto

    Tervakari, A-M. & Silius, K., 2005

    Research output: Artistic and non-textual formDigital or Visual ProductsScientific

  38. Published

    Verkkopalvelun sisällöntuotanto -oppimateriaali: Tampereen teknillinen yliopisto

    Tervakari, A-M. & Silius, K., 2005

    Research output: Artistic and non-textual formDigital or Visual ProductsScientific

  39. 2006
  40. 3D mesh coding using multiple description scalar quantizers

    Bici, M. O. & Akar, G. B., 2006, Proceedings of the IEEE 14th Signal Processing, Communication and Applications Conference, SIU 2006, Antalya, Turkey, 17-19 April 2006. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  41. A general model for gene regulatory networks with stochastic dynamics

    S. Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 3, 3, p. 261-266

    Research output: Contribution to journalArticleScientificpeer-review

  42. A general modeling strategy for gene regulatory networks with stochastic dynamics

    Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : Journal of Computational Biology. 13, 9, p. 1630-1639

    Research output: Contribution to journalArticleScientificpeer-review

  43. Alternative splicing variants of IRF-1 lacking wxons 7, 8, and 9 in cervical cancer

    Lee, E., Jo, M., Park, J., Zhang, W. & Lee, J. H., 2006, In : Biochemical and Biophysical Research Communications. 347, 4, p. 882-888

    Research output: Contribution to journalArticleScientificpeer-review

  44. An interaction between insulin-like growth factor binding protein 2 and integrin 5 is essential for IGFMP2-induced cell mobility

    Wang, G., Hu, L., Fuller, G. N. & Zhang, W., 2006, In : Journal of Biological Chemistry. 281, 20, p. 14085-14091

    Research output: Contribution to journalArticleScientificpeer-review

  45. A proposed model for small-world structural organization of mission teams and tasks in order to optimize efficiency and minimize costs

    S. Ribeiro, A. & Almeida, M., 2006, In : Acta Astronautica. 59, 8-11, p. 1086-1092

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    A UML-based approach for abstracting interfaces to REST-like services

    Laitkorpi, M., Koskinen, J. & Systä, T., 2006, WCRE '06, Proceedings of the 13th Working Conference on Reverse Engineering, Benevento, Italy, Oct. 2006. p. 134-146

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Chemical genetic identification of the IGF-linked pathway that is mediated by STAT6 and MFP2

    Choi, Y., Shimogawa, H., Murakami, K., Ramdas, L., Zhang, W., Qin, L. & Uesugi, M., 2006, In : Chemistry and Biology. 13, 3, p. 241-249

    Research output: Contribution to journalArticleScientificpeer-review

  48. Different perspectives on learning in information system development

    Pirinen, A. & Pekkola, S., 2006, Proceedings of the 29th Information Systems Research Seminar in Scandinavia, IRIS'29.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Early effects of imatinib mesylate on the expression of insulin-like growth factor binding proetein 3 and psitrom emission tomography in patients with gastrointestinal stromal tumor

    Trent, J. C., Ramdas, L., Dupart, J. J., Hunt, K., Oyedeji, C., Taylor, E. E., Hu, L., Chen, L. L., Benjamin, R. S., Pollock, R. & Zhang, W., 2006, In : Cancer. 107, 8, p. 1898-1908

    Research output: Contribution to journalArticleScientificpeer-review

  50. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2006, Proceedings of Hawaii International Conference on System Sciences, 2006, Hawaii, HICSS-38.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Evaluating end-user support: Validating the use of multiple media in a CSCW application

    Pekkola, S. & Isomäki, H., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, 4-7 January 2006. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Expression of Bcl-2 in gastrointestinal stromal tumors: correlation with progression-free survival in 81 patients treated with imatinib mesylate

    Steinert, D. M., Oyarzo, M., Wang, X., Choi, H., Thall, P. F., Medeiros, L. J., Raymond, A. K., Benjamin, R. S., Zhang, W. & Trent, J. C., 2006, In : Cancer. 106, 7, p. 1617-1623

    Research output: Contribution to journalArticleScientificpeer-review

  53. Inactivation of IkB contributes to transcriptional activation of spermidine/spermine N(1)-acetyltransferase

    Choi, W., Proctor, L., Xia, Q., Feng, Y., Gerner, E. W., Chiao, P. J., Hamilton, S. R. & Zhang, W., 2006, In : Molecular Carcinogenesis. 45, 9, p. 685-693

    Research output: Contribution to journalArticleScientificpeer-review

  54. Insulin-like growth factor binding protein 2 and 5 are differentially regulated in ovarian cancer of different histologic types

    Wang, H., Rosen, D. G., Fuller, G. N., Zhang, W. & Liu, J., 2006, In : Modern Pathology. 19, 9, p. 1149-1156

    Research output: Contribution to journalArticleScientificpeer-review

  55. Measuring information propagation and retention in Boolean networks and its implications to a model of human organizations

    S. Ribeiro, A., Este, R. A., Lloyd-Price, J. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 5, 12, p. 2935-2942

    Research output: Contribution to journalArticleScientificpeer-review

  56. Mitochondrial respiration defects in cancer cells cause activation of Akt survival pathway through a redox-mediated mechanism

    Pelicano, H., Xu, R. H., Du, M., Feng, L., Sasaki, R., Carew, J. S., Hu, Y., Ramdas, L., Hu, L., Keating, M. J., Zhang, W., Plunkett, W. & Huang, P., 2006, In : Journal of Cell Biology. 175, 6, p. 913-923

    Research output: Contribution to journalArticleScientificpeer-review

  57. Multiple description scalar quantization based 3D mesh coding

    Bici, M. O. & Akar, G. B., 2006, Proceedings of 2006 IEEE International Conference on Image Processing, ICIP 2006, Atlanta, Georgia, USA, 8-11 October 2006. p. 553-556

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  58. Mutation screening of the androgen receptor promoter and untranslated regions in prostate cancer

    Waltering, K. K., Wallen, M. J., Tammela, T. L. J., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 15, p. 1585-1591

    Research output: Contribution to journalArticleScientificpeer-review

  59. Overexpression of IGFBP5, but not IGFBP3, correlates with the histologic grade of human diffuse glioma: a tissue microarray and immunohistochemical study

    Wang, H., Zhang, W. & Fuller, G. N., 2006, In : Technology in Cancer Research and Treatment. 5, 3, p. 195-200

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    Performance Implications of Design Pattern Usage in Distributed Applications - Case Studies in J2EE and .NET.

    Rudzki, J. & Systä, T., 2006, ROSATEA '06 Proceedings of the ISSTA 2006 workshop on Role of software architecture for testing and analysis, Portland, Maine, USA, July 17-20, 2006. p. 1-11 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  61. Presenting the past: A framework for faciliatating the externalization and articulation of user activities in desktop environment

    Wieroos, K. & Pekkola, S., 2006, Proceedings of the Annual Hawaii International Conference on System Sciences, 4-7 January 2006, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  62. Published

    Profile-Based Approach to Support Comprehension of Software Behavior

    Koskinen, J., Kettunen, M. & Systä, T., 2006, Proceedings of the 14th IEEE International Conference on Program Comprehension (ICPC 2006), 14-16 June 2006, Athens, Greece. p. 212-224

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  63. RhG-CSF mobilized and apheresis-collected endothelial progenitor cells: a novel blood cell component for therapeutic vasculogenesis

    Korbling, M., Reuben, J. M., Gao, H., Lee, B. N., harris, D. M., Cogdell, D., Giralt, S. A., Khouri, I. F., Saliba, R. M., Champlin, R. E., Zhang, W. & Estrov, Z., 2006, In : Transfusion. 46, p. 1795-1802

    Research output: Contribution to journalArticleScientificpeer-review

  64. Screening of genetic and expression alterations of SRC1 gene in prostate cancer

    Mäki, H. E., Waltering, K. K., Wallen, M. J., Martikainen, P. M., Tammela, T. L. J., van Weerden, W. M., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 13, p. 1391-1398 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Shrew 1 gene, frequently deleted in oligodendrogliomas, functions to inhibit cell adhesion and migration

    McDonald, J. M., Dunlap, S., Cogdell, D., Dumnire, V., Wei, Q., Starzinski-Powitz, A., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 3, p. 300-304

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Three-dimensional monochromatic light field synthesis with a deflectable mirror array device

    Ulusoy, E., Uzunov, V., Onural, L., Ozaktas, H. M. & Gotchev, A., 2006, Proceedigs of SPIE Photon Management II, Strasbourg, France, 20 April 2006. Sheridan, J. T. & Wyrowski, F. (eds.). p. 12 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  67. Towards formalised end-user participation in information systems development process: grdging the gap between participatory desgin and ISD methodologies

    Pekkola, S., Kaarilahti, N. & Pohjola, P., 2006, 2006 Participatory Desgin Conference, PDC 2006, August 1-5, 2006, Trento, Italy. p. 21-30

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  68. Transcriptional activation of the carboxylesterase 2 gene by the p53 pathway

    Choi, W., Cogdell, D., Feng, Y., Hamilton, S. R. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 11, p. 1450-1456

    Research output: Contribution to journalArticleScientificpeer-review

  69. Vasculogenic mimicry is associated with high tumor grade, invasion and metastasis, and shor survival in patients with hepatocellular carcinoma

    Sun, B. C., Zhang, S. W., Zhang, D. F., Du, J., Guo, H., Hao, X. L., Zhang, W. & Hao, X. S., 2006, In : Oncology Report. 16, 4, p. 693-698

    Research output: Contribution to journalArticleScientificpeer-review

  70. 2007
  71. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, In : International Journal of Oncology. 31, 2, p. 431-440

    Research output: Contribution to journalArticleScientificpeer-review

  72. Activation of polyamine catabolism by N1, N11-dietylnorspermine alters the cellular localization of mTOR and downregulates mTOR protein level in glioblastoma cells

    Jiang, R., Choi, W., Hu, L., Gerner, W. W., Hamilton, S. R. & Zhang, W., 2007, In : Cancer Biology and Therapy. 6, 10, p. 1644-1648

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Applying template meta-programming techniques for a domain-specific visual language - an industrial experience report

    Karaila, M. & Systä, T., 2007, 29th International Conference on Software Engineering (ICSE '07), Minneapolis, MN, USA, 20-26 May 2007. p. 571-580

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  74. Published

    Applying triple graph grammars for pattern-based workflow model transformations

    Lohmann, C., Greenyer, J., Jiang, J. & Systä, T., 2007, In : Journal of Object Technology, Special Issue: TOOLS EUROPE 2007. 6, 9, p. 253-273

    Research output: Contribution to journalArticleScientificpeer-review

  75. Assessment of automated scintigram alignment in the stackgram domain for cardiac stress-rest SPECT studies

    Happonen, A. P. & Koskinen, M. O., 2007, In : Computerized Medical Imaging and Graphics. 31, 8, p. 595-606

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Avustajaportti - Verkkopalvelu henkilökohtaisen avun välittämiseen

    Häkkinen, P., Kaikuvuo, I., Mäkelä, T., Mäkinen, R., Silius, K. & Tervakari, A-M., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  77. CellLine, a stochastic cell lineage simulator

    S. Ribeiro, A., Charlebois, D. A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 24, p. 3409-3411

    Research output: Contribution to journalArticleScientificpeer-review

  78. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, In : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  80. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, In : Breast Cancer Research and Treatment. 103, 3, p. 319-329

    Research output: Contribution to journalArticleScientificpeer-review

  81. Distribution and viral load of eight oncogenic types of human papillomavirus (HPV) and HPV 16 integration status in cervical intraepithelial neoplasia and carcinoma

    Guo, M., Sneige, N., Silva, E., Jan, Y. J., Cogdell, D., Lin, E., Luthra, R. & Zhang, W., 2007, In : Modern Pathology. 20, p. 256-266

    Research output: Contribution to journalArticleScientificpeer-review

  82. Effects of coupling strength and space on the dynamics of coupled toggle switches in stochastic gene networks with multiple-delayed reactions

    S. Ribeiro, A., 2007, In : Physical Review E. 75, 6, 061903.

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    Effects of microarray noise on inference efficiency of a stochastic model of gene networks

    Charlebois, D. A., S. Ribeiro, A., Lehmussola, A., Lloyd-Price, J., Yli-Harja, O. & Kauffman, S. A., 2007, In : WSEAS Transactions on Biology and Biomedicine. 4, 2, p. 15-21

    Research output: Contribution to journalArticleScientificpeer-review

  84. Expression level of insulin-like growth factor binding protein 5 mRNA is a prognostic factor for breast cancer

    Li, X., Cao, X., Zhang, W. & Feng, Y., 2007, In : Cancer Science. 98, 10, p. 1592-1596

    Research output: Contribution to journalArticleScientificpeer-review

  85. Expression of receptor tyrosine kinases and apoptotic molecules in rhabdomyosarcoma: correlation with overall survival in 105 patients

    Armistead, P. M., Salganick, J., Roh, J. S., Steinert, D. M., Patel, S., Munsell, M., El-Naggar, A., Benjamin, R. S., Zhang, W. & Trent, J. C., 2007, In : Cancer. 110, 10, p. 2293-2303

    Research output: Contribution to journalArticleScientificpeer-review

  86. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas

    Price, N., Trent, J., El-Naggar, A., Cogdell, D., Taylor, E. E., Hunt, K., Pollock, R., Hood, L., Shmulevich, I. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, p. 3414-3419

    Research output: Contribution to journalArticleScientificpeer-review

  87. Independent motile microplast formation correlates with glioma cell invasiveness

    Yount, G., Taft, R., Luu, T., Rachlin, K., Moore, D. & Zhang, W., 2007, In : Journal of Neuro-Oncology. 81, 2, p. 113-121

    Research output: Contribution to journalArticleScientificpeer-review

  88. Insulin-like growth factor binding protein 2 promotes glioma development and progression

    Dunlap, S. M., Celestino, J., Wang, H., Jiang, R., Holland, E., Fueller, G. N. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 28, p. 11736-11741

    Research output: Contribution to journalArticleScientificpeer-review

  89. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, In : Journal of Proteome Research. 6, 4, p. 1560-1567

    Research output: Contribution to journalArticleScientificpeer-review

  90. Lääketieteen kirjallisuustietokannat ja tiedonhaku

    Heikkinen, J., Isohanni, M. & Miettunen, J., 2007, In : Suomen Lääkärilehti. 62, 22, p. 2156-2170

    Research output: Contribution to journalReview ArticleScientificpeer-review

  91. Learning and distributed systems development

    Pekkola, S., 2007, ECSCW'07 workshop on The Challenges of Collaborative Work in Global Software Development.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  92. MicroRNA expression profiling in prostate cancer

    Porkka, K. P., Pfeiffer, M. J., Waltering, K. K., Vessella, R. I., Tammela, T. L. J. & Visakorpi, T., 2007, In : Cancer Research. 67, 13, p. 6130-6135

    Research output: Contribution to journalArticleScientificpeer-review

  93. Molecular approaches to resolve diagnostic dilemmas: the case of gastrointestinal stromal tumor and leiomyosarcoma

    Trent, J., Lazar, A. J. F. & Zhang, W., 2007, In : Future Oncology. 3, 6, p. 629-637

    Research output: Contribution to journalArticleScientificpeer-review

  94. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, In : British Journal of Cancer. 96, 2, p. 352-356

    Research output: Contribution to journalArticleScientificpeer-review

  95. Noisy attractors and ergodic sets in models of gene regulatory networks

    S. Ribeiro, A. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 247, 4, p. 743-755

    Research output: Contribution to journalArticleScientificpeer-review

  96. Online interaction with in vitro neuronal networks

    Weihberger, O., Mikkonen, J. E. & Egert, U., 2007, Proceedings of the Seventh Göttingen Meeting of the German Neuroscience Society, 29 March - 1 April 2007, Göttingen, Germany. p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  97. Published

    Open Source Contributions as Platform Specialization Units

    Hammouda, I. & Mikkonen, T., 2007, Proceedings of OSSPL 2007, Limerick, Ireland, June 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  98. Published

    Polkka-blogit - Opetuskäyttöön TTY:lle räätälöity blogijärjestelmä

    Huhtamäki, J., Häkkinen, P., Kaikuvuo, I., Pohjanen, L., Rasi, E., Saarela, L., Silius, K., Tervakari, A-M. & Zetterberg, S., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  99. Polymorphic TP53BP1 and TP53 gene interactions associated with risk of squamous cell carcinoma of the head and neck

    Chen, K. X., Hu, Z., Wang, L. E., Zhang, W., Sturgis, E. M. & Wei, Q., 2007, In : Clinical Cancer Research. 13, 14, p. 4300-4305

    Research output: Contribution to journalArticleScientificpeer-review

  100. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 6, p. 777-779

    Research output: Contribution to journalArticleScientificpeer-review

  101. Single nucleotide polymorphisms at the TP53-binding or responsive promoter regions of BAX and BCL2 genes and risk of squamous cell carcinoma of the head and neck

    Chen, K., Hu, Z., Wang, L., Sturgis, E. M., El-Naggar, A. K., Zhang, W. & Wei, Q., 2007, In : Carcinogenesis. 28, 9, p. 2008-2012

    Research output: Contribution to journalArticleScientificpeer-review

  102. Published
  103. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models

    Zhu, R., S. Ribeiro, A., Salahub, D. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 246, 4, p. 725-745

    Research output: Contribution to journalArticleScientificpeer-review

  104. Studying utility of personal usage-history: A software tool for enabling empirical research

    Wideroos, K. & Pekkola, S., 2007, In : Lecture Notes in Computer Science. 4550, p. 976-984

    Research output: Contribution to journalArticleScientificpeer-review

  105. Published

    Time-interleaved simulcast and redundant intra picture insertion for reducing tune-in delay in DVB-H

    Malamal Vadakital, V. K., Hannuksela, M. M. & Gabbouj, M., 2007, Proceedings of the 16th International Packet Video Workshop, Packet Video 2007, Lausanne, Swizerland, 12-13 November 2007. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  106. Towards industrial service business: Challenges in Designing ICT support for the networks of companies

    Hiippavuori, S., Hänninen, M., Pekkola, S. & Luostarinen, K., 2007, Proceedings of the 9th International Conference on Enterprise Information Systems ICEIS'07, June 12-16 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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