Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 1999
  2. Published

    On noise reduction in iterative image reconstruction algorithms for emission tomography: median root prior

    Alenius, S., 1999, Tampere University of Technology. 74 p. (Tampere University of Technology. Publications; vol. 265)

    Research output: Book/ReportDoctoral thesisCollection of Articles

  3. 2000
  4. Iterative reconstruction method based on median root prior in quantification with PET

    Katoh, C., Alenius, S. & Ruotsalainen, U., 2000, Positron Emission Tomography in the Millennium. Tamaki, N., Tsukamoto, E., Kuge, Y., Katoh, C. & Morita, K. (eds.). Amsterdam: Elsevier Science Publishers B.V., p. 265-270 6 p. (INTERNATIONAL CONGRESS SERIES; vol. 1197).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Cerebral glucose metabolism in survivors of childhood acute lymphoblastic leukemia

    Kahkonen, M., Metsahonkala, L., Minn, H., Utriainen, T., Korhonen, T., Norvasuo-Heila, MK., Harila-Saari, A., Aarimaa, T., Suhonen-Polvi, H., Ruotsalainen, U., Solin, O. & Salmi, TT., 1 Feb 2000, In : Cancer. 88, 3, p. 693-700 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2003
  7. Published

    MUVIS: A Content-based multimedia indexing and retrieval framework

    Kiranyaz, S., Caglar, K., Guldogan, E., Guldogan, O. & Gabbouj, M., 2003, Proceedings of the Third International Workshop on Content-Based Multimedia Indexing, CBMI 2003, Rennes, France, 22-24 September 2003. INRIA, p. 405-412

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  8. 2005
  9. Published

    A&O - Virtual learning environment

    Ala-Rantala, M., Levasma, J., Mäkelä, T., Nykänen, O., Pohjanen, L., Pohjolainen, S., Ruokamo, H., Salonen, J. & Silius, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  10. Alterations in transcription clusters underlie development of bladder cancer along papillary and non-papillary pathways

    Kim, J-H., Tuziak, T., Hu, L., Gold, D., Wang, Z., Bondaruk, J., Fuller, G. N., Dinney, C., Grossman, H. B., Baggerly, K., Zhang, W. & Czerniak, B., 2005, In : Laboratory Investigation. 85, 4, p. 532-549

    Research output: Contribution to journalArticleScientificpeer-review

  11. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms

    Hu, J., Kapoor, M., Zhang, W., Hamilton, S. R. & Coombes, K., 2005, In : Bioinformatics. 21, 17, p. 3524-3529

    Research output: Contribution to journalArticleScientificpeer-review

  12. Androgen receptor modifications in prostate cancer cells upon long-term androgen ablation and antiandrogen treatment

    Marques, R. B., Erkens-Schulze, S., de Ridder, C. M., Hermans, K. G., Waltering, K., Visakorpi, T., Trapman, J., Romijn, J. C., van Weerden, W. M. & Jenster, G., 2005, In : International Journal of Cancer. 117, 2, p. 221-229

    Research output: Contribution to journalArticleScientificpeer-review

  13. A single-gene biomarker identifies breast cancers associated with immature cell type and short duration of prior breastfeeding

    Symmans, W. F., Fiterman, D. J., Anderson, S. K., Ayers, M., Rouzier, R., Dunmire, C., Stec, J., Valero, V., Sneige, N., Albarracin, C., Wu, Y., Ross, J. S., Wagner, P., Theriault, R. L., Arun, B., Kuerer, H., Hess, K. R., Zhang, W., Hortobagyi, G. N. & Pusztai, L., 2005, In : Endocrine-Related Cancer. 12, p. 1059-1069

    Research output: Contribution to journalArticleScientificpeer-review

  14. Attenuated expression of DFFB is a hallmark of oligodendrogrliomas with 1p-allelic loss

    McDonald, J. M., Dunmire, C., Cogdell, D., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2005, In : Molecular Cancer. 4, 35, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Basis for tool support for product-line processes

    Harsu, M. & Peltonen, J., 2005, Tampere: Tampere University of Technology. 43 p. (Tampere University of Technology. Institute of Software Systems. Report; vol. 38)

    Research output: Book/ReportCommissioned reportProfessional

  16. Combination of 5-fluorouracil and N1-acetyltransferase expression, depletes polyamines, and synergistically induces apoptosis in colon carcinoma cells

    Choi, W., Gerner, E., Ramadas, L., Dupart, J., Carew, J., Huang, P., Zhang, W. & Hamilton, S. R., 2005, In : Journal of Biological Chemistry. 280, 5, p. 3295-3304

    Research output: Contribution to journalArticleScientificpeer-review

  17. Constitutive activation of JAK3/STAT3 in colon carcinoma tumors and cell lines: inhibition of JAK3/STAT3 signaling induces apoptosis and cell cycle arrest of colon carcinoma

    Lin, Q., Lai, R., Li, C., Chirieac, L. R., Grammatikakis, I., Thomazy, V. A., Rassidakis, G. Z., Zhang, W., Fujio, Y., Kunisada, K., Hamilton, S. R. & Amin, H. M., 2005, In : American Journal of Pathology. 167, 4, p. 969-980

    Research output: Contribution to journalArticleScientificpeer-review

  18. Effects of lattice structure in the dynamics of coupled elements

    S. Ribeiro, A. & Lind, P. G., 2005, In : Physica Scripta. T118, p. 165-167

    Research output: Contribution to journalArticleScientificpeer-review

  19. Elevated expressions of p21 (WAFI/Cip1) in hormonally active pituitary adenomas

    Neto, A. G., McCutcheon, I. E., Vang, R., Spencer, M. L., Zhang, W. & Fuller, G. N., 2005, In : Annals of Diagnostic Pathology. 9, p. 6-10

    Research output: Contribution to journalArticleScientificpeer-review

  20. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2005, Proceedings of Hawaii International Conference on System Sciences, 3.-6.12.2005, Hawaii. p. p. 218

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Evaluation of disparity map characteristics for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of IEEE International Conference on Image Processing, ICIP 2005, Genoca, Italy, 11-14 September 2005. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Expression of CD29 on lymphoma cells and/or CD36 on microvascular endothels correlates with high serum LDH level in diffuse large B-cell lymphomas (DLBSLs) and is frequent in de novo CD5-positive DLBCLs

    Ueno, S., Yamaguchi, M., Kimura, M., Odagiri, H., Shiraki, K., Uemoto, S., Nakamura, N., Zhang, W., Shiku, H. & Kobayashi, T., 2005, In : International Journal of Oncology. 27, 5, p. 1241-1246

    Research output: Contribution to journalArticleScientificpeer-review

  23. Human orientation in Scandinavian IS research as it appears in SJIS

    Koaskinen, M., Liimatainen, K. & Pekkola, S., 2005, Proceedings of the 28th Information Systems Research Seminar in Scandinavia, IRIS'28, Kristiansand, Norway, August 6-9, 2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Imatinib mesylate: targeted therapy of gastrointestinal stromal tumor

    Trent, J., Dupart, J. & Zhang, W., 2005, In : Current Cancer Therapy Reviews. 1, p. 93-108 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Inactivation of the invasion inhibitory protein gene IIp45 by alternative splicing in gliomas

    Song, S. W., Fuller, G. N., Zheng, H. & Zhang, W., 2005, In : Clinical Cancer Research. 65, p. 3562-3567

    Research output: Contribution to journalArticleScientificpeer-review

  26. Kognitiivisen verkkopedagogiikan erityiskysymyksiä

    Niemelä, M., Pekkola, S. & Wahlstedt, A., 2005, Kognitiivisen verkkopedagogiikan erityiskysymyksiä. Marttunen, M. & Marjomaa, E. (eds.). Joensuu University Press, p. 18-33

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  27. Published

    Matematiikkajumppa - Automatically generated STACK exercises in Mathematics Remedial Instruction

    Kangas, J., Miilumäki, T., Mäkelä, T., Pohjolainen, S., Rautiainen, E., Turunen, E. & Vattulainen, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  28. Nuances of human-centredness in information systems development

    Isomäki, H. & Pekkola, S., 2005, Proceedings of the Annual Hawaii International Conference on System Sciences, 3-6 January 2005, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    Opiskelijan myyttiset 1 600 tuntia

    Valmari, A., 2005, In : Tietojenkäsittelytiede. 24, p. 4-7

    Research output: Contribution to journalArticleScientificpeer-review

  30. Overexpression of tropomysin-related kinase B in metastatick human pancreatic cancer cells

    Sclabas, G. M., Frederick, W. A. I., Fujioka, S., Schmidt, C., Yang, W., Yokoi, K., Evans, D. B., Denny, A., Abbruzzese, J., Hess, K. R., Zhang, W., Fidler, I. J. & Chiao, P., 2005, In : Clinical Cancer Research. 11, p. 440-449

    Research output: Contribution to journalArticleScientificpeer-review

  31. Reflective user in practice: Explorations from two cases

    Pekkola, S., 2005, International reports on socio-informatics. Dittrich, Y., Dourish, P., Morch, A., Pipek, V., Stevens, G. & Törpel, B. (eds.). p. 94-98

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  32. Published

    Specifying UML Profile for Distributed Communicating Systems and Communication Protocols

    Leppänen, S., Ilic, D., Malik, Q., Systä, T. & Troubitsyna, E., 2005, Workshop Proceedings, 2005 ECMDA, European Conference on Model Driven Architecture, Workshop on "Consistency in Model Driven Engineering" - C@MoDE, November 7th, 2005, Nuremberg, Germany. p. 16 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. The prognostic impact of histology and 1p/19q status in anaplastic oligodendroglial tumors

    McDonald, J. M., See, S., Tremont, I., Colman, H., Gilbert, M., Groves, M., Burger, P., Louis, D. N., Giannini, C., Fuller, G. N., Passe, S., Blair, H., jenkins, R. B., Yang, H., Ledoux, A., Tipnis, U., Zhang, W., Hess, K. & Aldape, K., 2005, In : Cancer. 104, 7, p. 1468-1477

    Research output: Contribution to journalArticleScientificpeer-review

  34. The signaling network of tumor invasion

    Wang, G. K. & Zhang, W., 2005, In : Histology and Histopathology. 20, p. 593-602

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    TOIVO-osaamiskartoitusväline: Verkkopalvelu työnhakijoiden osaamisen kartoittamiseen

    Häkkinen, P., Silius, K., Tervakari, A-M. & Vilen, J., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  36. Using disparity map compensation for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of the IEEE 13th Signal Processing, Communication and Applications Conference, SIU 2005, Kayseri, Turkey, May 2005. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Published

    Verkkopalvelun käyttökelpoisuuden arvioiminen -oppimateriaali: Tampereen teknillinen yliopisto

    Tervakari, A-M. & Silius, K., 2005

    Research output: Artistic and non-textual formDigital or Visual ProductsScientific

  38. Published

    Verkkopalvelun sisällöntuotanto -oppimateriaali: Tampereen teknillinen yliopisto

    Tervakari, A-M. & Silius, K., 2005

    Research output: Artistic and non-textual formDigital or Visual ProductsScientific

  39. 2006
  40. 3D mesh coding using multiple description scalar quantizers

    Bici, M. O. & Akar, G. B., 2006, Proceedings of the IEEE 14th Signal Processing, Communication and Applications Conference, SIU 2006, Antalya, Turkey, 17-19 April 2006. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  41. A general model for gene regulatory networks with stochastic dynamics

    S. Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 3, 3, p. 261-266

    Research output: Contribution to journalArticleScientificpeer-review

  42. A general modeling strategy for gene regulatory networks with stochastic dynamics

    Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : Journal of Computational Biology. 13, 9, p. 1630-1639

    Research output: Contribution to journalArticleScientificpeer-review

  43. Alternative splicing variants of IRF-1 lacking wxons 7, 8, and 9 in cervical cancer

    Lee, E., Jo, M., Park, J., Zhang, W. & Lee, J. H., 2006, In : Biochemical and Biophysical Research Communications. 347, 4, p. 882-888

    Research output: Contribution to journalArticleScientificpeer-review

  44. An interaction between insulin-like growth factor binding protein 2 and integrin 5 is essential for IGFMP2-induced cell mobility

    Wang, G., Hu, L., Fuller, G. N. & Zhang, W., 2006, In : Journal of Biological Chemistry. 281, 20, p. 14085-14091

    Research output: Contribution to journalArticleScientificpeer-review

  45. A proposed model for small-world structural organization of mission teams and tasks in order to optimize efficiency and minimize costs

    S. Ribeiro, A. & Almeida, M., 2006, In : Acta Astronautica. 59, 8-11, p. 1086-1092

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    A UML-based approach for abstracting interfaces to REST-like services

    Laitkorpi, M., Koskinen, J. & Systä, T., 2006, WCRE '06, Proceedings of the 13th Working Conference on Reverse Engineering, Benevento, Italy, Oct. 2006. p. 134-146

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Chemical genetic identification of the IGF-linked pathway that is mediated by STAT6 and MFP2

    Choi, Y., Shimogawa, H., Murakami, K., Ramdas, L., Zhang, W., Qin, L. & Uesugi, M., 2006, In : Chemistry and Biology. 13, 3, p. 241-249

    Research output: Contribution to journalArticleScientificpeer-review

  48. Different perspectives on learning in information system development

    Pirinen, A. & Pekkola, S., 2006, Proceedings of the 29th Information Systems Research Seminar in Scandinavia, IRIS'29.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Early effects of imatinib mesylate on the expression of insulin-like growth factor binding proetein 3 and psitrom emission tomography in patients with gastrointestinal stromal tumor

    Trent, J. C., Ramdas, L., Dupart, J. J., Hunt, K., Oyedeji, C., Taylor, E. E., Hu, L., Chen, L. L., Benjamin, R. S., Pollock, R. & Zhang, W., 2006, In : Cancer. 107, 8, p. 1898-1908

    Research output: Contribution to journalArticleScientificpeer-review

  50. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2006, Proceedings of Hawaii International Conference on System Sciences, 2006, Hawaii, HICSS-38.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Evaluating end-user support: Validating the use of multiple media in a CSCW application

    Pekkola, S. & Isomäki, H., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, 4-7 January 2006. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Expression of Bcl-2 in gastrointestinal stromal tumors: correlation with progression-free survival in 81 patients treated with imatinib mesylate

    Steinert, D. M., Oyarzo, M., Wang, X., Choi, H., Thall, P. F., Medeiros, L. J., Raymond, A. K., Benjamin, R. S., Zhang, W. & Trent, J. C., 2006, In : Cancer. 106, 7, p. 1617-1623

    Research output: Contribution to journalArticleScientificpeer-review

  53. Inactivation of IkB contributes to transcriptional activation of spermidine/spermine N(1)-acetyltransferase

    Choi, W., Proctor, L., Xia, Q., Feng, Y., Gerner, E. W., Chiao, P. J., Hamilton, S. R. & Zhang, W., 2006, In : Molecular Carcinogenesis. 45, 9, p. 685-693

    Research output: Contribution to journalArticleScientificpeer-review

  54. Insulin-like growth factor binding protein 2 and 5 are differentially regulated in ovarian cancer of different histologic types

    Wang, H., Rosen, D. G., Fuller, G. N., Zhang, W. & Liu, J., 2006, In : Modern Pathology. 19, 9, p. 1149-1156

    Research output: Contribution to journalArticleScientificpeer-review

  55. Measuring information propagation and retention in Boolean networks and its implications to a model of human organizations

    S. Ribeiro, A., Este, R. A., Lloyd-Price, J. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 5, 12, p. 2935-2942

    Research output: Contribution to journalArticleScientificpeer-review

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