Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2000
  2. Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2000, In : Journal of Physiology: Paris. 94, 5-6, p. 555-567 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2001
  4. Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2001, In : Journal of Physiology: Paris. 95, 1-6, p. 497 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2006
  7. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. 2009
  9. Published

    Neural networks, cell cultures and some older work on data analysis.

    Acimovic, J., 15 Jun 2009.

    Research output: Other conference contributionPaper, poster or abstractScientific

  10. Published

    Computational tools for assessing the properties of 2D neural cell cultures

    Acimovic, J., Teppola, H., Selinummi, J. J. & Linne, M-L., 13 Jul 2009, Eighteenth Annual Computational Neuroscience Meeting: CNS*2009. Johnson, D. (ed.). Berlin: BioMed Central, Vol. 10 (Suppl 1). p. P170 1 p. P170

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. 2010
  12. Published

    Computational modeling of growth in cortial cultures using the NETMORPH simulation tool

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2010, Neuroscience 2010, 40th Annual Meeting, San Diego, USA, 13-17 November 2010. p. 2 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. 2011
  14. Published

    Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P203 1 p. P203. (Annual Computational Neuroscience Meeting CNS; vol. 12).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Neuromuscular pathology in mice lacking alpha-synuclein

    Pelkonen, A. & Yavich, L., 10 Jan 2011, In : Neuroscience Letters. 487, 3, p. 350-353 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Fault tolerant machine learning for nanoscale cognitive radio

    Pajarinen, J., Peltonen, J. & Uusitalo, M. A., Feb 2011, In : Neurocomputing. 74, 5, p. 753-764 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies

    Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J., Mar 2011, In : European Journal of Neurology. 18, 3, p. 402-409 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Effects of structure on spontaneous activity in simulated neuronal networks

    Mäki-Marttunen, T., Acimovic, J., Ruohonen, K. & Linne, M-L., 11 Apr 2011, Proceedings of Mathematical Neuroscience (ICMS 2011), April 11-13, 2011, Edinburgh, Scotland.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Published

    Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study

    Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I., May 2011, In : JOURNAL OF NEUROIMMUNOLOGY. 234, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling

    Heikkinen, H., Vinberg, F., Nymark, S. & Koskelainen, A., May 2011, In : Journal of Neurophysiology. 105, 5, p. 2309-2318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Emergence of global and local structural features during development of neuronal networks

    Acimovic, J., 6 Jun 2011, Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere: TICSP, (TICSP Series ; vol. 57).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Published

    Effects of local structure of neuronal networks on spiking activity in silico

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 18 Jul 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P202 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    COX-2 regulates the proliferation of glioma stem like cells

    Sharma, V., Dixit, D., Ghosh, S. & Sen, E., Oct 2011, In : NEUROCHEMISTRY INTERNATIONAL. 59, 5, p. 567-571 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. 2012
  26. Published

    Comparison of eye movement filters used in HCI

    Špakov, O., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 281-284 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Published

    Gaze gestures or dwell-based interaction?

    Hyrskykari, A., Istance, H. & Vickers, S., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 229-232 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Published

    Simple gaze gestures and the closure of the eyes as an interaction technique

    Heikkilä, H. & Räihä, K. J., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 147-154 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    The effect of different text presentation formats on eye movement metrics in reading

    Sharmin, S., Špakov, O. & Räihä, K. J., 2012, In : JOURNAL OF EYE MOVEMENT RESEARCH. 5, 3, 3.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    The validity of using non-representative users in gaze communication research

    Istance, H., Vickers, S. & Hyrskykari, A., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 233-236 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Published

    Cortical spreading depression in alpha-synuclein knockout mice

    Pelkonen, A. & Yavich, L., Jan 2012, In : SYNAPSE. 66, 1, p. 81-84 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Significance of graph theoretic measures in predicting neuronal network activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 23 Feb 2012, Proceedings of The 9th annual Computational and Systems Neuroscience meeting (COSYNE 2012). Salt Lake City, p. 55-55 1 p. I-15

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats

    Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L., Apr 2012, In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101, 2, p. 239-245 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients

    Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I., 15 Sep 2012, In : JOURNAL OF NEUROIMMUNOLOGY. 250, 1-2, p. 106-110 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke

    Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T., Oct 2012, In : CEREBROVASCULAR DISEASES. 34, 3, p. 191-198 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    In silico study on structure and dynamics in bursting neuronal networks

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 13 Oct 2012, Neuroscience 2012; 42nd Annual Meeting, New Orleans, USA, October 14-18, 2012. Society for Neuroscience (SfN), 1 p. 300.26/DDD70

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Published

    Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J., Dec 2012, In : EPILEPSIA. 53, 12

    Research output: Contribution to journalArticleScientificpeer-review

  39. 2013
  40. Published

    Disconnection between periodic leg movements and cortical arousals in spinal cord injury

    Salminen, A. V., Manconi, M., Rimpilä, V., Luoto, T. M., Koskinen, E., Ferri, R., Öhman, J. & Polo, O., 2013, In : JOURNAL OF CLINICAL SLEEP MEDICINE. 9, 11, p. 1207-1209 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

    Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells

    Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R., Apr 2013, In : Journal of Neuroscience Methods. 215, 1, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI

    Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R., 29 May 2013, In : NeuroReport. 24, 8, p. 440-444 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    On the effect of network structure and synaptic mechanisms on sustained bursting activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 8 Jul 2013, Twenty Second Annual Computational Neuroscience Meeting: CNS*2013. Cymbalyuk, G. & Prinz, A. (eds.). Paris, France: BioMed Central, Vol. Volume 14 Suppl 1. p. P247 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Published

    Transfer learning using a nonparametric sparse topic model

    Faisal, A., Gillberg, J., Leen, G. & Peltonen, J., 18 Jul 2013, In : Neurocomputing. 112, p. 124-137 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Effects of exogenous alpha-synuclein on stimulated dopamine overflow in dorsal striatum

    Pelkonen, A., Kallunki, P. & Yavich, L., 25 Oct 2013, In : Neuroscience Letters. 554, p. 141-145 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Post-stroke depression and depression-executive dysfunction syndrome are associated with recurrence of ischaemic stroke

    Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J., Vataja, R. & Erkinjuntti, T., Dec 2013, In : CEREBROVASCULAR DISEASES. 36, 5-6, p. 336-343 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Learning sparse representations for view-independent human action recognition based on fuzzy distances

    Iosifidis, A., Tefas, A. & Pitas, I., 9 Dec 2013, In : Neurocomputing. 121, p. 344-353 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. 2014
  50. Published

    Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation

    Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S., 2014, In : OTOLOGY AND NEUROTOLOGY. 35, 4

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Haptic feedback to gaze events

    Kangas, J., Rantala, J., Majaranta, P., Isokoski, P. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 11-18 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Published

    Look and lean: Accurate head-assisted eye pointing

    Špakov, O., Isokoski, P. & Majaranta, P., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 35-42 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Published

    Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Real-time hidden gaze point correction

    Špakov, O. & Gizatdinova, Y., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 291-294 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  55. Published

    TraQuMe: A tool for measuring the gaze tracking quality

    Akkil, D., Isokoski, P., Kangas, J., Rantala, J. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 327-330 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  56. Published

    Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans

    Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J., 28 May 2014, In : JOURNAL OF CLINICAL AND EXPERIMENTAL NEUROPSYCHOLOGY. 36, 5, p. 540-550 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J., 1 Nov 2014, In : EPILEPSY RESEARCH. 108, 9, p. 1675-1679 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Regularized extreme learning machine for multi-view semi-supervised action recognition

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Dec 2014, In : Neurocomputing. 145, p. 250-262 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. 2015
  60. Published

    Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K., 2015, In : NeuroImage: Clinical. 7, p. 823-829 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

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