Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    Neurofunctional plasticity in fraction learning: An fMRI training study

    Wortha, S. M., Bloechle, J., Ninaus, M., Kiili, K., Lindstedt, A., Bahnmueller, J., Moeller, K. & Klein, E., 1 Dec 2020, In : Trends in Neuroscience and Education. 21, 15 p., 100141.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Assessment of PIV performance in validating CFD models from nasal cavity CBCT scans

    Ormiskangas, J., Valtonen, O., Kivekäs, I., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Harju, T., Saarenrinne, P. & Rautiainen, M., 1 Nov 2020, In : Respiratory Physiology and Neurobiology. 282, 9 p., 103508.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

    Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  5. Published

    Automatic assessment of the myoclonus severity from videos recorded according to standardized Unified Myoclonus Rating Scale protocol and using human pose and body movement analysis

    Hyppönen, J., Hakala, A., Annala, K., Zhang, H., Peltola, J., Mervaala, E. & Kälviäinen, R., 1 Mar 2020, In : Seizure. 76, p. 72-78 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Deep audio-visual saliency: Baseline model and data

    Tavakoli, H. R., Borji, A., Kannala, J. & Rahtu, E., 6 Feb 2020, Proceedings ETRA 2020 Short Papers - ACM Symposium on Eye Tracking Research and Applications, ETRA 2020. Spencer, S. N. (ed.). ACM, 3

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Published

    A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate

    Lenk, K., Satuvuori, E., Lallouette, J., Ladrón-de-Guevara, A., Berry, H. & Hyttinen, J. A. K., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 19 p., 92.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

    Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience. 11, 13, p. 1914–1924 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth

    Rezaei, A., Koulouri, A. & Pursiainen, S., 2020, In : Brain Topography. 33, 2, p. 161-175 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

    Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

    Research output: Contribution to journalArticleScientificpeer-review

  11. 2019
  12. Published

    Unique Features of Network Bursts Emerge From the Complex Interplay of Excitatory and Inhibitory Receptors in Rat Neocortical Networks

    Teppola, H., Aćimović, J. & Linne, M. L., 6 Sep 2019, In : FRONTIERS IN CELLULAR NEUROSCIENCE. 13, 377.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Viability of Mouse Retinal Explant Cultures Assessed by Preservation of Functionality and Morphology

    Alarautalahti, V., Ragauskas, S., Hakkarainen, J. J., Uusitalo-Järvinen, H., Uusitalo, H., Hyttinen, J., Kalesnykas, G. & Nymark, S., 1 May 2019, In : Investigative ophthalmology & visual science. 60, 6, p. 1914-1927 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity

    Rimpiläinen, V., Koulouri, A., Lucka, F., Kaipio, J. P. & Wolters, C. H., 1 Mar 2019, In : NeuroImage. 188, p. 252-260 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Diffusion tensor imaging and disability progression in multiple sclerosis: A 4-year follow-up study

    Kolasa, M., Hakulinen, U., Brander, A., Hagman, S., Dastidar, P., Elovaara, I. & Sumelahti, M-L., Jan 2019, In : Brain and Behavior. 9, 1, e01194.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  18. Published

    A realistic, accurate and fast source modeling approach for the EEG forward problem

    Miinalainen, T., Rezaei, A., Us, D., Nüßing, A., Engwer, C., Wolters, C. H. & Pursiainen, S., 2019, In : NeuroImage. 184, 1, p. 56-67 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Astrocyte lineage cells are essential for functional neuronal differentiation and synapse maturation in human iPSC-derived neural networks

    Klapper, S. D., Garg, P., Dagar, S., Lenk, K., Gottmann, K. & Nieweg, K., 2019, In : Glia. 67, 10, p. 1893-1909 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Overview of Sources and Characteristics of Nanoparticles in Urban Traffic-Influenced Areas

    Rönkkö, T. & Timonen, H., 2019, In : Journal of Alzheimer's Disease. 72, 1, p. 15-28 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Teaching semantics and skills for human-robot collaboration

    Angleraud, A., Houbre, Q. & Pieters, R., 2019, In : Paladyn. 10, 1, p. 318-329 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. E-pub ahead of print

    Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab

    He, Q., Rezaei, A. & Pursiainen, S., 2019, In : Neuroinformatics. 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2018
  24. Published

    Cognitive load and metacognitive confidence extraction from pupillary response

    Gavas, R. D., Tripathy, S. R., Chatterjee, D. & Sinha, A., 1 Dec 2018, In : Cognitive Systems Research. 52, p. 325-334 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Human-robot interactive learning architecture using ontologies and symbol manipulation

    Angleraud, A., Houbre, Q., Kyrki, V. & Pieters, R., 6 Nov 2018, RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE, p. 384-389 6 p. (IEEE RO-MAN).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Data-driven study of synchronous population activity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 29 Oct 2018, In : BMC Neuroscience. 19, Suppl 2, p. 68-69 1 p.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  27. Published

    Improvement of computational efficiency of a biochemical plasticity model

    Lehtimäki, M., Paunonen, L. & Linne, M-L., 29 Sep 2018, In : BMC Neuroscience. 19, Suppl 2, p. 66-66 P130.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  28. Published

    Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 20 Sep 2018.

    Research output: Other conference contributionPaper, poster or abstractScientific

  29. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Improving efficiency in convolutional neural networks with multilinear filters

    Tran, D. T., Iosifidis, A. & Gabbouj, M., 1 Sep 2018, In : Neural Networks. 105, p. 328-339 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters

    Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T., 1 Aug 2018, In : Neuroscience. 384, p. 214-223 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Epileptiform and periodic EEG activities induced by rapid sevoflurane anaesthesia induction

    Sonkajärvi, E., Rytky, S., Alahuhta, S., Suominen, K., Kumpulainen, T., Ohtonen, P., Karvonen, E. & Jäntti, V., 1 Mar 2018, In : Clinical Neurophysiology. 129, 3, p. 638-645 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Nonlinear recurrent neural networks for finite-time solution of general time-varying linear matrix equations

    Xiao, L., Liao, B., Li, S. & Chen, K., Feb 2018, In : Neural Networks. 98, p. 102-113 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    A Primal Neural Network for Online Equality-Constrained Quadratic Programming

    Chen, K. & Zhang, Z., 2018, In : Cognitive Computation. 10, 2, p. 381–388 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    From in silico astrocyte cell models to neuron-astrocyte network models: A review

    Oschmann, F., Berry, H., Obermayer, K. & Lenk, K., 2018, In : BRAIN RESEARCH BULLETIN. 136, p. 76-84

    Research output: Contribution to journalReview ArticleScientificpeer-review

  36. 2017
  37. Published

    Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

    Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    MetrIntMeas a novel metric for measuring the intelligence of a swarm of cooperating agents

    Iantovics, L. B., Emmert-Streib, F. & Arik, S., 1 Oct 2017, In : Cognitive Systems Research. 45, p. 17-29 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry

    Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D., 16 Aug 2017, In : ACS Chemical Neuroscience. 8, 8, p. 1767-1778 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Measures of spike train synchrony for data with multiple time scales

    Satuvuori, E., Mulansky, M., Bozanic, N., Malvestio, I., Zeldenrust, F., Lenk, K. & Kreuz, T., 1 Aug 2017, In : Journal of Neuroscience Methods. 287, p. 25-38 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Atomistic fingerprint of hyaluronan–CD44 binding

    Vuorio, J., Vattulainen, I. & Martinez-Seara, H., 1 Jul 2017, In : PLoS Computational Biology. 13, 7, e1005663.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    CNN-based edge filtering for object proposals

    Waris, M. A., Iosifidis, A. & Gabbouj, M., 2 Jun 2017, In : Neurocomputing. 266, p. 631-640

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Network-wide adaptive burst detection depicts neuronal activity with improved accuracy

    Välkki, I. A., Lenk, K., Mikkonen, J. E., Kapucu, F. E. & Hyttinen, J. A. K., 31 May 2017, In : Frontiers in Computational Neuroscience. 11, 40.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Functional brain segmentation using inter-subject correlation in fMRI

    Kauppi, J-P., Pajula, J., Niemi, J., Hari, R. & Tohka, J., 1 May 2017, In : Human Brain Mapping. 38, 5, p. 2643-2665 23 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Cell culture chamber with gas supply for prolonged recording of human neuronal cells on microelectrode array

    Kreutzer, J., Ylä-Outinen, L., Mäki, A., Ristola, M., Narkilahti, S. & Kallio, P., 15 Mar 2017, In : Journal of Neuroscience Methods. 280, p. 27-35 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Advanced boundary electrode modeling for tES and parallel tES/EEG

    Pursiainen, S., Agsten, B., Wagner, S. & Wolters, C. H., 2017, In : IEEE Transactions on Neural Systems and Rehabilitation Engineering. 26, 1, p. 37-44

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

    Moradi, E., Khundrakpam, B., Lewis, J. D., Evans, A. C. & Tohka, J., 2017, In : NeuroImage. 144, A, p. 128–141

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Spinal cord injury induces widespread chronic changes in cerebral white matter

    Ilvesmäki, T., Koskinen, E., Brander, A., Luoto, T., Öhman, J. & Eskola, H., 2017, In : Human Brain Mapping. 38, 7, p. 3637-3647

    Research output: Contribution to journalArticleScientificpeer-review

  50. 2016
  51. Published

    The relationship between recognition memory for emotion-laden words and white matter microstructure in normal older individuals

    Saarela, C., Karrasch, M., Ilvesmäki, T., Parkkola, R., Rinne, J. O. & Laine, M., 1 Nov 2016, In : NeuroReport. 27, 18, p. 1345-1349 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Automatic objective thresholding to detect neuronal action potentials

    Tanskanen, J. M. A., Kapucu, F. E., Välkki, I. & Hyttinen, J. A. K., 29 Aug 2016, Proceedings of 2016 24th European Signal Processing Conference (EUSIPCO). p. 662-666 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Published

    Effect of rhodopsin phosphorylation on dark adaptation in mouse rods

    Berry, J., Frederiksen, R., Yao, Y., Nymark, S., Chen, J. & Cornwall, C., 29 Jun 2016, In : Journal of Neuroscience. 36, 26, p. 6973-6987 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia

    Tohka, J., Moradi, E., Huttunen, H., Alzheimer’s Disease Neuroimaging Initiative & Alzheimer’s Disease Neuroimaging Initiative 2, 2016, In : Neuroinformatics. 14, 3, p. 279-296 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI

    Pajula, J. & Tohka, J., 2016, In : Computational Intelligence and Neuroscience. 2016, 2094601.

    Research output: Contribution to journalArticleScientificpeer-review

Previous 1 2 3 Next