Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2009
  2. Vertex partitioning based multiple description coding of 3D dynamic meshes

    Bici, M. O., Stefanoski, N. & Akar, G. B., 2009, Proceedings of the 3rd 3DTV-Conference, The True Vision - Capture, Transmission and Display of 3D Video, 3DTV-CON 2009, Potsdam, Germany, 4-6 May 2009. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  3. Published

    WesQu - Web service quality evaluation tool

    Häkkinen, P., Kailanto, M., Mäkinen, R., Silius, K. & Tervakari, A-M., 2009

    Research output: Artistic and non-textual formSoftwareScientific

  4. Published

    Wille for Orange - Wille Widgets for developing data mining applications in Orange Canvas

    Nykänen, O., 2009

    Research output: Artistic and non-textual formSoftwareScientific

  5. 2008
  6. A cancer incidence survey in Tianjin - the third largest city in China - between 1981 and 2000

    Song, F. J., He, M., Li, H. X., Qian, B. Y., Wei, Q., Zhang, W., Chen, K. & Hao, X. S., 2008, In : Cancer Causes and Control. 19, 5, p. 443-450

    Research output: Contribution to journalArticleScientificpeer-review

  7. A model of genetic networks with delayed stochastic dynamics

    S. Ribeiro, A., 2008, Analysis of Microarray Data: A Network-Based Approach. Dehmer, M. & Emmert-Streib, F. (eds.). Wiley, p. 169-204

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  8. Androgen regulation of the androgen receptor coregulators

    Urbanucci, A., Waltering, K. K., Suikki, H. E., Helenius, M. A. & Visakorpi, T., 2008, In : BMC Cancer. 8, 219, p. 10 p

    Research output: Contribution to journalArticleScientificpeer-review

  9. Application of triple correlation and bispectrum for interference immunity improvement in telecommunications systems

    Molchanov, P. & Totsky, A., 2008, In : International Journal of Applied Mathematics and Computer Science. 18, 3, p. 361-367

    Research output: Contribution to journalArticleScientific

  10. Published

    Automatic music transcription

    Klapuri, A. & Virtanen, T., 2008, , Handbook of Signal Processing in Acoustics. Havelock, D. (ed.). Springer, p. 277-303

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  11. Clinical, histopathologic, molecular, and therapeutic findings in a large kindred with gastrointestinal stromal tumor

    Kleinbaum, E. P., Lazar, A. J. F., Tamborini, E., Chen, L. L., Strong, L., Choi, H., Benjamin, R. S., Zhang, W. & Trent, J. C., 2008, In : International Journal of Cancer. 122, 3, p. 711-718

    Research output: Contribution to journalArticleScientificpeer-review

  12. Comparative analysis of spectrum and bispectrum estimations of coherent millimeter radar signals scattered by begetation and precipitation

    Khlopov, G. I., Khomenko, S. I., Morozov, V. Y., Molchanov, P. A., Tepliuk, A. L. & Totsky, A. V., 2008, Proceedings of 2008 International Radar Symposium IRS, Wroclaw, Poland, 21-23 May 2008. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. Distributed 3D dynamic mesh coding

    Bici, M. O. & Akar, G. B., 2008, Proceedings of 2008 IEEE International Conference on Image Processing, ICIP 2008, San Diego, California, USA, 12-15 October 2008. p. 2432-2435

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    DReAMT: A tool set for interactive model transformations

    Siikarla, M., 2008, In Proceedings of the Nordic Workshop on Model Driven Engineering, NWMoDE’08, Reykjavik, Iceland, August 2008. p. 1-15 15 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Dynamic multi-swarm particle swarm optimization with fractional global best formation

    Pulkkinen, J., Kiranyaz, S. & Gabbouj, M., 2008, In. Raiko, T. et al. (Eds.). Proceedings of the 13th Finnish Artificial Intelligence Conference STeP 2008, AI and Machine Consciousness, Helsinki, Finland, 20-22 August, 2008. p. 52-59

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  16. Published

    Dynamics and evolution of stochastic bistable gene networks with sensisng in fluctuating environments

    S. Ribeiro, A., 2008, In : Physical Review E. 78, 6, 061902, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Erimenu.fi: Web service for supporting people who have a special diet

    Huhtamäki, J., Häkkinen, P., Immonen, T., Kaikuvuo, I., Mäki, A., Mäkinen, R., Silius, K., Tebest, T. & Tervakari, A-M., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  18. Evaluation of a commercialized in situ hybridization assay for detecting human paillomavirus DNA in tissue specimens from patients with cervical intraepithelial neoplasia and cervical carcinoma

    Guo, M., Gong, Y., Deavers, M., Silva, E., Jan, Y. J., Zhang, W., Cogdell, D., Lin, E., Luthra, R. & Sneige, N., 2008, In : Journal of Clinical Microbiology. 46, 1, p. 274-280

    Research output: Contribution to journalArticleScientificpeer-review

  19. Evolution from heterozygous to homozygous KIT mutation in gastrointestinal stromal tumor correlates eith the mechanism of mitotic nondisjunction and significant tumor progression

    Chen, L. L., Holden, J. A., Choi, H., Zhu, J., Wu, E. F., Jones, K. A., Ward, J. H., Andtbacka, R., Randall, R. L., Scife, C. L., Hunt, K. K., Prieto, V. G., Raymond, A. K., Zhang, W., Trent, J. C., Benjamin, R. S. & Frazier, M. L., 2008, In : Modern Pathology. 21, 7, p. 826-836

    Research output: Contribution to journalArticleScientificpeer-review

  20. Gene expression profiling of diffuse large B-cell lymphoma supervised by CD21 expression

    Miyazaki, K., Yamaguchi, M., Suguro, M., Ogawa, S., Ueno, S., Ji, Y., Choi, W., Zhang, W., Katayama, N., Shiku, H. & Kobayashi, T., 2008, In : British Journal of Haematology. 142, 4, p. 562-570

    Research output: Contribution to journalArticleScientificpeer-review

  21. Identification of ETS-like transcription factor 4 as a novel androgen receptor target in prostate cancer cells

    Makkonen, H., Jääskeläinen, T., Pitkänen-Arsiola, T., Rytinki, M., Waltering, K. K., Mättö, M., Visakorpi, T. & Palvimo, J. J., 2008, In : Oncogene. 27, 36, p. 4865-4876

    Research output: Contribution to journalArticleScientificpeer-review

  22. IGFBP2 and IGFBP5 overexpression correaltes with the lymph node metastasis in T1 breasdt carcinomas

    Wang, H., Arun, B. K., Fuller, G. N., Zhang, W., Middleton, L. P. & Sahin, A. A., 2008, In : Breast Journal. 14, 3, p. 261-267

    Research output: Contribution to journalArticleScientificpeer-review

  23. Importance of side information generation for distributed video coding

    Isik, C. V., Bici, M. O., Aksay, A. & Akar, G. B., 2008, Proceedings of the IEEE 16th Signal Processing, Communication and Applications Conference, SIU 2008, Didim, Turkey, 20-22 April 2008. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    Konfokaalimikroskopia

    Mäkiraatikka, E., 2008, In : Solu, biotekniikan koulutusohjelman äänenkannattaja. 2, p. 4-7

    Research output: Contribution to journalArticleProfessional

  25. Published

    Matematiikan perustaitotesti - STACK based Mathematics Basic Skills Test

    Miilumäki, T., Mäkelä, T., Pohjolainen, S., Turunen, E. & Vattulainen, K., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  26. Methods for identifying and studying genetic alterations in hormone-dependent cancers

    Saramäki, O. R., Waltering, K. K. & Visakorpi, T., 2008, The Nuclear Receptor Superfamily: Methods and Protocols. McEwan, I. J. (ed.). p. 263-277

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  27. Published

    Multi-dimensional particle swarm optimization for dynamic environments

    Kiranyaz, S., Pulkkinen, J. & Gabbouj, M., 2008, Proceedings of International Conference on Innovations in Information Technology, IIT 2008, Al Ain, United Arab Emirates, 16-18 December 2008. p. 34-38

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Mutual information in random Boolean models of regulatory networks

    S. Ribeiro, A., Kauffman, S. A., Lloyd-Price, J., Samuelsson, B. & Socolar, J. E. S., 2008, In : Physical Review E. 77, 1, 011901, p. 10 p

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Optimize observational time points to maximize the inferability of gene networks

    Emmert-Streib, F. & Ribeiro, A., 2008, Proceedings of International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, Las Vegas, USA, 14-17 July 2008. Arabnia, H. R. (ed.). p. 55-60

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Published

    Pattern-based genetic model refinements in MDA

    Räihä, O., Koskimies, K., Mäkinen, E. & Systä, T., 2008, In : Nordic Journal of Computing. 14, 4, p. 338-355

    Research output: Contribution to journalArticleScientificpeer-review

  31. Phosphorylation of Thr18 and Ser20 in Ad-p53-induced apoptosis

    nakamizo, A., Amano, T., Zhang, W., Zhang, X. Q., Dunmire, V., Ramdas, L., Liu, T. J., Shono, T., Sasaki, T., Benedict, W. F., Sawaya, R. & Lang, F. F., 2008, In : Neuro-Oncology. 10, 3, p. 275-291

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Quantifying local structure effects in network dynamics

    S. Ribeiro, A., Lloyd-Price, J., Kesseli, J., Häkkinen, A. & Yli-Harja, O., 2008, In : Physical Review E. 78, 5, 056108, p. 10 p

    Research output: Contribution to journalArticleScientificpeer-review

  33. Recent progress in the genomics of soft tissue sarcomas

    Conley, A. P., Trent, J. & Zhang, W., 2008, In : Current Opinion in Oncology. 20, p. 395-399

    Research output: Contribution to journalReview ArticleScientificpeer-review

  34. Somatic genetic changes in prostate cancer

    Helenius, M. A., Waltering, K. K. & Visakorpi, T., 2008, prostate Cancer: Signaling Networks, Genetics, and New Treatment Strategies. Pestell, R. G. (ed.). p. 99-128

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  35. Somatic mutation analysis of MYHI I in breast and prostate cancer

    Alhopuro, P., Karhu, A., Winqvist, R., Waltering, K., Visakorpi, T. & Aaltonen, L. A., 2008, In : BMC Cancer. 8, 263, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  36. The hOGGI Ser326Cys polymorphism and lung cancer risk: a meta-analysis

    Li, H. X., Hao, X. S., Zhang, W., Wei, Q. & Chen, K., 2008, In : Cancer Epidemiology Biomarkers and Prevention. 17, 7, p. 1739-1745

    Research output: Contribution to journalArticleScientificpeer-review

  37. Time-frequency analysis of the non-stationary multifrequency signal by using parametrical short-time ispectral density estimation

    Molchanov, P. & Totsky, A., 2008, Proceedings of the International Conference TCSET 2008, Modern Problems of Radio Engineering, Telecommunications and Computer Science, Lviv-Slavsko, Ukraine, 19-23 February 2008. p. 276-279

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Towards interruptionless experiments on MEAs

    Mikkonen, J. E., Kandler, S., Okujeni, S., Weihberger, O. & Egert, U., 2008, Proceedings of the 6th International Meeting on Substrate-Integrated Micro Electrode Arrays, MEA Meeting 2008, 8-11 July 2008, Reutlingen, Germany. p. 331-332

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Published

    Transformational pattern system - some assembly required

    Siikarla, M. & Systä, T., 2008, In : Electronical Notes in Theoretical Computing. 211, p. 63-74

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    TTY-Piiri - Social web service for TUT students

    Huhtamäki, J., Miilumäki, T., Meriläinen, J., Pohjolainen, S., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  41. Published

    Vaikuttamistaidot: Online version of a material package on skills of e-democracy (Vaikuttamistaidot)

    Huhtamäki, J., Meriläinen, J., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  42. WWOX tumor suppressor gene

    Yang, J. & Zhang, W., 2008, In : Histology and Histopathology. 23, 7, p. 877-882

    Research output: Contribution to journalArticleScientificpeer-review

  43. 2007
  44. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, In : International Journal of Oncology. 31, 2, p. 431-440

    Research output: Contribution to journalArticleScientificpeer-review

  45. Activation of polyamine catabolism by N1, N11-dietylnorspermine alters the cellular localization of mTOR and downregulates mTOR protein level in glioblastoma cells

    Jiang, R., Choi, W., Hu, L., Gerner, W. W., Hamilton, S. R. & Zhang, W., 2007, In : Cancer Biology and Therapy. 6, 10, p. 1644-1648

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Applying template meta-programming techniques for a domain-specific visual language - an industrial experience report

    Karaila, M. & Systä, T., 2007, 29th International Conference on Software Engineering (ICSE '07), Minneapolis, MN, USA, 20-26 May 2007. p. 571-580

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Published

    Applying triple graph grammars for pattern-based workflow model transformations

    Lohmann, C., Greenyer, J., Jiang, J. & Systä, T., 2007, In : Journal of Object Technology, Special Issue: TOOLS EUROPE 2007. 6, 9, p. 253-273

    Research output: Contribution to journalArticleScientificpeer-review

  48. Assessment of automated scintigram alignment in the stackgram domain for cardiac stress-rest SPECT studies

    Happonen, A. P. & Koskinen, M. O., 2007, In : Computerized Medical Imaging and Graphics. 31, 8, p. 595-606

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Avustajaportti - Verkkopalvelu henkilökohtaisen avun välittämiseen

    Häkkinen, P., Kaikuvuo, I., Mäkelä, T., Mäkinen, R., Silius, K. & Tervakari, A-M., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  50. CellLine, a stochastic cell lineage simulator

    S. Ribeiro, A., Charlebois, D. A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 24, p. 3409-3411

    Research output: Contribution to journalArticleScientificpeer-review

  51. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, In : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  53. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, In : Breast Cancer Research and Treatment. 103, 3, p. 319-329

    Research output: Contribution to journalArticleScientificpeer-review

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