Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2011
  2. Published

    Physical chemistry: Water's wafer-thin surface

    Jungwirth, P., 8 Jun 2011, In : Nature. 474, 7350, p. 168-169 2 p.

    Research output: Contribution to journalShort surveyScientificpeer-review

  3. 2012
  4. Published

    A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data

    Emmert-Streib, F., De Matos Simoes, R., Tripathi, S., Glazko, G. V. & Dehmer, M., 2012, In : Scientific Reports. 2, 513.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Structure and permeation mechanism of a mammalian urea transporter

    Levin, E. J., Cao, Y., Enkavi, G., Quick, M., Pan, Y., Tajkhorshid, E. & Zhou, M., 10 Jul 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 28, p. 11194-11199 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Entropy analysis of word-length series of natural language texts: Effects of text language and genre

    Kalimeri, M., Constantoudis, V., Papadimitriou, C., Karamanos, K., Diakonos, F. K. & Papageorgiou, H., Sep 2012, In : INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 22, 9, 1250223.

    Research output: Contribution to journalArticleScientificpeer-review

  7. 2013
  8. Published

    Subangstrom resolution x-ray structure details aquaporin-water interactions

    Eriksson, U. K., Fischer, G., Friemann, R., Enkavi, G., Tajkhorshid, E. & Neutze, R., 2013, In : Science. 340, 6138, p. 1346-1349 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Structure-phenotype correlations of human CYP21A2 mutations in congenital adrenal hyperplasia

    Haider, S., Islam, B., D'Atri, V., Sgobba, M., Poojari, C., Sun, L., Yuen, T., Zaidi, M. & New, M. I., 12 Feb 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 7, p. 2605-2610 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Transient formation of water-conducting states in membrane transporters

    Li, J., Shaikh, S. A., Enkavi, G., Wen, P. C., Huang, Z. & Tajkhorshid, E., 7 May 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 19, p. 7696-7701 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Active optical clock based on four-level quantum system

    Zhang, T. G., Wang, Y. F., Zang, X. R., Zhuang, W. & Chen, J. B., Jun 2013, In : Chinese Science Bulletin. 58, 17, p. 2033-2038 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    An ensemble of classifiers based on different texture descriptors for texture classification

    Paci, M., Nanni, L. & Severi, S., Jul 2013, In : Journal of King Saud University - Science. 25, 3, p. 235-244 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Tooth wear and dentoalveolar remodeling are key factors of morphological variation in the Dmanisi mandibles

    Margvelashvili, A., Zollikofer, C. P. E., Lordkipanidze, D., Peltomäki, T. & De León, M. S. P., 22 Oct 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 43, p. 17278-17283 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. 2014
  15. Published

    Upstream Transcription Factor 1 (USF1) allelic variants regulate lipoprotein metabolism in women and USF1 expression in atherosclerotic plaque

    Fan, Y. M., Hernesniemi, J., Oksala, N., Levula, M., Raitoharju, E., Collings, A., Hutri-Kähönen, N., Juonala, M., Marniemi, J., Lyytikäinen, L. P., Seppälä, I., Mennander, A., Tarkka, M., Kangas, A. J., Soininen, P., Salenius, J. P., Klopp, N., Illig, T., Laitinen, T., Ala-Korpela, M., Laaksonen, R., Viikari, J., Kähönen, M., Raitakari, O. T. & Lehtimäki, T., 11 Apr 2014, In : Scientific Reports. 4, 4650.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Facile strain analysis of largely bending films by a surface-labelled grating method

    Akamatsu, N., Tashiro, W., Saito, K., Mamiya, J. I., Kinoshita, M., Ikeda, T., Takeya, J., Fujikawa, S., Priimagi, A. & Shishido, A., 20 Jun 2014, In : Scientific Reports. 4, 5377.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

    Tubio, J. M. C., Li, Y., Ju, Y. S., Martincorena, I., Cooke, S. L., Tojo, M., Gundem, G., Pipinikas, C. P., Zamora, J., Raine, K., Menzies, A., Roman-Garcia, P., Fullam, A., Gerstung, M., Shlien, A., Tarpey, P. S., Papaemmanuil, E., Knappskog, S., Van Loo, P., Ramakrishna, M., Davies, H. R., Marshall, J., Wedge, D. C., Teague, J. W., Butler, A. P., Nik-Zainal, S., Alexandrov, L., Behjati, S., Yates, L. R., Bolli, N., Mudie, L., Hardy, C., Martin, S., McLaren, S., O'Meara, S., Anderson, E., Maddison, M., Gamble, S., Foster, C., Warren, A. Y., Whitaker, H., Brewer, D., Eeles, R., Cooper, C., Neal, D., Lynch, A. G., Visakorpi, T., Isaacs, W. B., Van't Veer, L., Caldas, C., Desmedt, C., Sotiriou, C., Aparicio, S., Foekens, J. A., Eyfjörd, J. E., Lakhani, S. R., Thomas, G., Myklebost, O., Span, P. N., Børresen-Dale, A. L., Richardson, A. L., Van De Vijver, M., Vincent-Salomon, A., Van Den Eynden, G. G., Flanagan, A. M., Futreal, P. A., Janes, S. M., Bova, G. S., Stratton, M. R., McDermott, U. & Campbell, P. J., 1 Aug 2014, In : Science. 345, 6196, 1251343.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  18. 2015
  19. Published

    Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase

    Sharma, V., Enkavi, G., Vattulainen, I., Róg, T. & Wikström, M., 17 Feb 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 7, p. 2040-2045 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

    Turner, K. M., Sun, Y., Ji, P., Granberg, K. J., Bernard, B., Hu, L., Cogdell, D. E., Zhou, X., Yli-Harja, O., Nykter, M., Shmulevich, I., Yung, W. K. A., Fuller, G. N. & Zhang, W., 17 Mar 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3421-3426 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    N-Glycosylation as determinant of epidermal growth factor receptor conformation in membranes

    Kaszuba, K., Grzybek, M., Orłowski, A., Danne, R., Róg, T., Simons, K., Coskun, Ü. & Vattulainen, I., 7 Apr 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 14, p. 4334-4339 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    The evolutionary history of lethal metastatic prostate cancer

    Gundem, G., Van Loo, P., Kremeyer, B., Alexandrov, L. B., Tubio, J. M. C., Papaemmanuil, E., Brewer, D. S., Kallio, H. M. L., Högnäs, G., Annala, M., Kivinummi, K., Goody, V., Latimer, C., O'Meara, S., Dawson, K. J., Isaacs, W., Emmert-Buck, M. R., Nykter, M., Foster, C., Kote-Jarai, Z., Easton, D., Whitaker, H. C., Neal, D. E., Cooper, C. S., Eeles, R. A., Visakorpi, T., Campbell, P. J., McDermott, U., Wedge, D. C. & Bova, G. S., 15 Apr 2015, In : Nature. 520, 7547, p. 353-357 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Emergent rogue wave structures and statistics in spontaneous modulation instability

    Toenger, S., Godin, T., Billet, C., Dias, F., Erkintalo, M., Genty, G. & Dudley, J. M., 20 May 2015, In : Scientific Reports. 5, 10380.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Superdiffusion dominates intracellular particle motion in the supercrowded cytoplasm of pathogenic Acanthamoeba castellanii

    Reverey, J. F., Jeon, J-H., Bao, H., Leippe, M., Metzler, R. & Selhuber-Unkel, C., 30 Jun 2015, In : Scientific Reports. 5, 11690.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Real sequence effects on the search dynamics of transcription factors on DNA

    Bauer, M., Rasmussen, E. S., Lomholt, M. A. & Metzler, R., 8 Jul 2015, In : Scientific Reports. 5, 10072.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Caustics and rogue waves in an optical sea

    Mathis, A., Froehly, L., Toenger, S., Dias, F., Genty, G. & Dudley, J. M., 6 Aug 2015, In : Scientific Reports. 5, 12822.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Human iPSC derived disease model of MERTK-associated retinitis pigmentosa

    Lukovic, D., Castro, A. A., Delgado, A. B. G., Bernal, M. D. L. A. M., Pelaez, N. L., Lloret, A. D., Espejo, R. P., Kamenarova, K., Sánchez, L. F., Cuenca, N., Cortón, M., Fernandez, A. A., Sorkio, A., Skottman, H., Ayuso, C., Erceg, S. & Bhattacharya, S. S., 11 Aug 2015, In : Scientific Reports. 5, 12910.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    A Highly Efficient Sensor Platform Using Simply Manufactured Nanodot Patterned Substrates

    Rasappa, S., Ghoshal, T., Borah, D., Senthamaraikannan, R., Holmes, J. D. & Morris, M. A., 20 Aug 2015, In : Scientific Reports. 5, 13270.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Segmented molecular design of self-healing proteinaceous materials

    Sariola, V., Pena-Francesch, A., Jung, H., Çetinkaya, M., Pacheco, C., Sitti, M. & Demirel, M. C., 1 Sep 2015, In : Scientific Reports. 5, 13482.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Redox-induced activation of the proton pump in the respiratory complex I

    Sharma, V., Belevich, G., Gamiz-Hernandez, A. P., Róg, T., Vattulainen, I., Verkhovskaya, M. L., Wikström, M., Hummer, G. & Kaila, V. R. I., 15 Sep 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 37, p. 11571-11576 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells

    Mikhailova, A., Jylhä, A., Rieck, J., Nättinen, J., Ilmarinen, T., Veréb, Z., Aapola, U., Beuerman, R., Petrovski, G., Uusitalo, H. & Skottman, H., 1 Oct 2015, In : Scientific Reports. 5, 14684.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

    Honkela, A., Peltonen, J., Topa, H., Charapitsa, I., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M., 20 Oct 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 42, p. 13115-13120 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Interleukin-6 and microRNA profiles induced by oral bacteria in human atheroma derived and healthy smooth muscle cells

    Pessi, T., Viiri, L. E., Raitoharju, E., Astola, N., Seppälä, I., Waldenberger, M., Lounatmaa, K., Davies, A. H., Lehtimäki, T., Karhunen, P. J. & Monaco, C., 1 Dec 2015, In : SpringerPlus. 4, 1

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation

    Pulkkinen, O. & Metzler, R., 4 Dec 2015, In : Scientific Reports. 5, 17820.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning

    Larjo, A. & Lähdesmäki, H., 27 Dec 2015, In : Eurasip Journal on Bioinformatics and Systems Biology. 2015, 1, 6.

    Research output: Contribution to journalArticleScientificpeer-review

  36. 2016
  37. Published

    Selective effect of cell membrane on synaptic neurotransmission

    Postila, P. A., Vattulainen, I. & Róg, T., 19 Jan 2016, In : Scientific Reports. 6, 19345.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors

    Guixà-González, R., Javanainen, M., Gómez-Soler, M., Cordobilla, B., Domingo, J. C., Sanz, F., Pastor, M., Ciruela, F., Martinez-Seara, H. & Selent, J., 22 Jan 2016, In : Scientific Reports. 6, 19839.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    First passage time distribution in heterogeneity controlled kinetics: Going beyond the mean first passage time

    Godec, A. & Metzler, R., 8 Feb 2016, In : Scientific Reports. 6, 20349.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Optical detection of radon decay in air

    Sand, J., Ihantola, S., Peräjärvi, K., Toivonen, H. & Toivonen, J., 12 Feb 2016, In : Scientific Reports. 6, 21532.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    On the linear programming bound for linear Lee codes

    Astola, H. & Tabus, I., 1 Mar 2016, In : SpringerPlus. 5, 1, p. 1-13 13 p., 246.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Behaviour of one-step spray-coated carbon nanotube supercapacitor in ambient light harvester circuit with printed organic solar cell and electrochromic display

    Tuukkanen, S., Välimäki, M., Lehtimäki, S., Vuorinen, T. & Lupo, D., 9 Mar 2016, In : Scientific Reports. 6, 22967.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Quasi two-dimensional astigmatic solitons in soft chiral metastructures

    Laudyn, U. A., Jung, P. S., Karpierz, M. A. & Assanto, G., 15 Mar 2016, In : Scientific Reports. 6, 22923.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Step down Vascular Calcification Analysis using State-of-the-Art Nanoanalysis Techniques

    Curtze, S. C., Kratz, M., Steinert, M. & Vogt, S., 16 Mar 2016, In : Scientific Reports. 6, 23285.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women

    Wiklund, P., Zhang, X., Pekkala, S., Autio, R., Kong, L., Yang, Y., Keinänen-Kiukaanniemi, S., Alen, M. & Cheng, S., 15 Apr 2016, In : Scientific Reports. 6, 24540.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    1700 nm dispersion managed mode-locked bismuth fiber laser

    Noronen, T., Firstov, S., Dianov, E. & Okhotnikov, O. G., 21 Apr 2016, In : Scientific Reports. 6, 24876.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Lower bound for the spatial extent of localized modes in photonic-crystal waveguides with small random imperfections

    Faggiani, R., Baron, A., Zang, X., Lalouat, L., Schulz, S. A., O'Regan, B., Vynck, K., Cluzel, B., De Fornel, F., Krauss, T. F. & Lalanne, P., 1 Jun 2016, In : Scientific Reports. 6, 27037.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Brain hemodynamic activity during viewing and re-viewing of comedy movies explained by experienced humor

    Jääskeläinen, I. P., Pajula, J., Tohka, J., Lee, H. J., Kuo, W. J. & Lin, F. H., 21 Jun 2016, In : Scientific Reports. 6, 27741.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex

    Postila, P. A., Kaszuba, K., Kuleta, P., Vattulainen, I., Sarewicz, M., Osyczka, A. & Róg, T., 26 Sep 2016, In : Scientific Reports. 6, 33607.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Trends for isolated amino acids and dipeptides: Conformation, divalent ion binding, and remarkable similarity of binding to calcium and lead

    Ropo, M., Blum, V. & Baldauf, C., 3 Nov 2016, In : Scientific Reports. 6, 35772.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Surface-Enhanced Impulsive Coherent Vibrational Spectroscopy

    Du, J., Harra, J., Virkki, M., Mäkelä, J. M., Leng, Y., Kauranen, M. & Kobayashi, T., 4 Nov 2016, In : Scientific Reports. 6, 36471.

    Research output: Contribution to journalArticleScientificpeer-review

  52. 2017
  53. Published

    Infiltrated bunch of solitons in Bi-doped frequency-shifted feedback fibre laser operated at 1450 nm

    Rissanen, J., Korobko, D. A., Zolotovsky, I. O., Melkumov, M., Khopin, V. F. & Gumenyuk, R., 10 Mar 2017, In : Scientific Reports. 7, 44194.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

    Valkonen, M., Ruusuvuori, P., Kartasalo, K., Nykter, M., Visakorpi, T. & Latonen, L., 20 Mar 2017, In : Scientific Reports. 7, 44831.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Väitöstilaisuus yliopiston imagonluojana

    Katko, T. S., May 2017, In : Tiedepolitiikka. 42, 1, p. 63-64 2 p.

    Research output: Contribution to journalComment/debateScientific

  56. Published

    Traffic is a major source of atmospheric nanocluster aerosol

    Rönkkö, T., Kuuluvainen, H., Karjalainen, P., Keskinen, J., Hillamo, R., Niemi, J. V., Pirjola, L., Timonen, H. J., Saarikoski, S., Saukko, E., Järvinen, A., Silvennoinen, H., Rostedt, A., Olin, M., Yli-Ojanperä, J., Nousiainen, P., Kousa, A. & Dal Maso, M., 18 Jul 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 29, p. 7549-7554 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Mechanistic principles underlying regulation of the actin cytoskeleton by phosphoinositides

    Senju, Y., Kalimeri, M., Koskela, E. V., Somerharju, P., Zhao, H., Vattulainen, I. & Lappalainen, P., 24 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. E8977-E8986

    Research output: Contribution to journalArticleScientificpeer-review

Previous 1 2 Next