Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances

    Tienaho, J., Poikulainen, E., Sarjala, T., Muilu-Mäkelä, R., Santala, V. & Karp, M., 2018, In : Photochemistry and Photobiology. 94, 6, p. 1273-1280

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    A BRCA1-interacting lncRNA regulates homologous recombination

    Sharma, V., Khurana, S., Kubben, N., Abdelmohsen, K., Oberdoerffer, P., Gorospe, M. & Misteli, T., 1 Nov 2015, In : EMBO REPORTS. 16, 11, p. 1520-1534 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Acquiring respiration rate from photoplethysmographic signal by recursive bayesian tracking of intrinsic modes in time-frequency spectra

    Pirhonen, M., Peltokangas, M. & Vehkaoja, A., 1 Jun 2018, In : Sensors. 18, 6, 1693.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  5. Published

    Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution

    Kerst, T., Malmbeck, R., lal Banik, N. L. & Toivonen, J., 1 Apr 2019, In : Sensors (Switzerland). 19, 7, 1602.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology

    Calderón-Garcidueñas, L., González-Maciel, A., Reynoso-Robles, R., Kulesza, R. J., Mukherjee, P. S., Torres-Jardón, R., Rönkkö, T. & Doty, R. L., 1 Oct 2018, In : Environmental Research. 166, p. 348-362 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band

    Mehrang, S., Pietilä, J. & Korhonen, I., 22 Feb 2018, In : Sensors. 18, 2, 613.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS

    Häkkinen, M. R., Roine, A., Auriola, S., Tuokko, A., Veskimäe, E., Keinänen, T. A., Lehtimäki, T., Oksala, N. & Vepsäläinen, J., 15 Dec 2013, In : JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 941, p. 81-89 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    An architectural understanding of natural sway frequencies in trees

    Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    An efficient auxin-inducible degron system with low basal degradation in human cells

    Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells

    Ji, J., Sharma, V., Qi, S., Guarch, M. E., Zhao, P., Luo, Z., Fan, W., Wang, Y., Mbabaali, F., Neculai, D., Esteban, M. A., McPherson, J. D. & Batada, N. N., 14 Jan 2014, In : Stem Cell Reports. 2, 1, p. 44-51 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation

    Nguyen, S. D., Javanainen, M., Rissanen, S., Zhao, H., Huusko, J., Kivelä, A. M., Ylä-Herttuala, S., Navab, M., Fogelman, A. M., Vattulainen, I., Kovanen, P. T. & Öörni, K., 1 Jun 2015, In : Journal of Lipid Research. 56, 6, p. 1206-1221 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    A robust AMMI model for the analysis of genotype-by-environment data

    Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    AROS has a context-dependent effect on SIRT1

    Kokkola, T., Suuronen, T., Molnár, F., Määttä, J., Salminen, A., Jarho, E. M. & Lahtela-Kakkonen, M., 2 May 2014, In : FEBS Letters. 588, 9, p. 1523-1528 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis

    Euro, L., Haapanen, O., Róg, T., Vattulainen, I., Suomalainen, A. & Sharma, V., 7 Mar 2017, In : Biochemistry. 56, 9, p. 1227-1238 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Azopolymer photopatterning for directional control of angiogenesis

    Fedele, C., De Gregorio, M., Netti, P. A., Cavalli, S. & Attanasio, C., 1 Nov 2017, In : Acta Biomaterialia. 63, p. 317-325 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data

    Yu, G., Zhang, B., Bova, G. S., Xu, J., Shih, I. M. & Wang, Y., Jun 2011, In : Bioinformatics. 27, 11, p. 1473-1480 8 p., btr183.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Behavior of the DPH fluorescence probe in membranes perturbed by drugs

    Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases

    Ojansivu, M., Wang, X., Hyväri, L., Kellomäki, M., Hupa, L., Vanhatupa, S. & Miettinen, S., 2018, In : European Cells and Materials. 35, p. 53-71 19 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells

    Ojansivu, M., Vanhatupa, S., Björkvik, L., Häkkänen, H., Kellomäki, M., Autio, R., Ihalainen, J. A., Hupa, L. & Miettinen, S., 15 Jul 2015, In : Acta Biomaterialia. 21, p. 190-203 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current

    Kekonen, A., Bergelin, M., Johansson, M., Kumar Joon, N., Bobacka, J. & Viik, J., 31 May 2019, In : Sensors. 19, 11

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations

    Jurkiewicz, P., Olzyńska, A., Cwiklik, L., Conte, E., Jungwirth, P., Megli, F. M. & Hof, M., Oct 2012, In : Biochimica et Biophysica Acta: Biomembranes. 1818, 10, p. 2388-2402 15 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  23. Published

    Blood microRNA profile associates with the levels of serum lipids and metabolites associated with glucose metabolism and insulin resistance and pinpoints pathways underlying metabolic syndrome. The cardiovascular risk in Young Finns Study.

    Raitoharju, E., Seppälä, I., Oksala, N., Lyytikäinen, L. P., Raitakari, O., Viikari, J., Ala-Korpela, M., Soininen, P., Kangas, A. J., Waldenberger, M., Klopp, N., Illig, T., Leiviskä, J., Loo, B. M., Hutri-Kähönen, N., Kähönen, M., Laaksonen, R. & Lehtimäki, T., 25 Jun 2014, In : Molecular and Cellular Endocrinology. 391, 1-2, p. 41-49 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition

    Bilkova, E., Pleskot, R., Rissanen, S., Sun, S., Czogalla, A., Cwiklik, L., Róg, T., Vattulainen, I., Cremer, P. S., Jungwirth, P. & Coskun, Ü., 22 Mar 2017, In : Journal of the American Chemical Society. 139, 11, p. 4019-4024 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Calcium transients closely reflect prolonged action potentials in iPSC models of inherited cardiac arrhythmia

    Spencer, C. I., Baba, S., Nakamura, K., Hua, E. A., Sears, M. A. F., Fu, C. C., Zhang, J., Balijepalli, S., Tomoda, K., Hayashi, Y., Lizarraga, P., Wojciak, J., Scheinman, M. M., Aalto-Setälä, K., Makielski, J. C., January, C. T., Healy, K. E., Kamp, T. J., Yamanaka, S. & Conklin, B. R., 12 Aug 2014, In : Stem Cell Reports. 3, 2, p. 269-281 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism

    Ryödi, E., Metso, S., Jaatinen, P., Huhtala, H., Saaristo, R., Välimäki, M. & Auvinen, A., 1 Oct 2015, In : Journal of Clinical Endocrinology and Metabolism. 100, 10, p. 3710-3717 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications

    Pitkänen, S., Paakinaho, K., Pihlman, H., Ahola, N., Hannula, M., Asikainen, S., Manninen, M., Morelius, M., Keränen, P., Hyttinen, J., Kellomäki, M., Laitinen-Vapaavuori, O. & Miettinen, S., 5 Aug 2019, In : European cells & materials. 38, p. 35-50 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Characterizing rate limiting steps in transcription from RNA production times in live cells

    Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Cholesterol oxidation products and their biological importance

    Kulig, W., Cwiklik, L., Jurkiewicz, P., Rog, T. & Vattulainen, I., 2016, In : Chemistry and Physics of Lipids. 199, p. 144-160 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Cholesterol under oxidative stress: How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols

    Kulig, W., Olzyńska, A., Jurkiewicz, P., Kantola, A. M., Komulainen, S., Manna, M., Pourmousa, M., Vazdar, M., Cwiklik, L., Rog, T., Khelashvili, G., Harries, D., Telkki, V. V., Hof, M., Vattulainen, I. & Jungwirth, P., 1 Jul 2015, In : Free Radical Biology and Medicine. 84, p. 30-41 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Comparative analysis of tissue reconstruction algorithms for 3D histology

    Kartasalo, K., Latonen, L., Vihinen, J., Visakorpi, T., Nykter, M. & Ruusuvuori, P., 1 Sep 2018, In : Bioinformatics. 34, 17, p. 3013-3021 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Comparative evaluation of gene set analysis approaches for RNA-Seq data

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 5 Dec 2014, In : BMC Bioinformatics. 15, 1, 397.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Comparison of different coating techniques on the properties of FucoPol films

    Ferreira, A. R. V., Haapanen, J., Mäkelä, J. M., Bratvold, J. E., Nilsen, O., Tuominen, M., Alves, V. D. & Coelhoso, I. M., 1 Oct 2017, In : International Journal of Biological Macromolecules. 103, p. 268-274 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome

    Takala, H., Lehtivuori, H., Hammarén, H., Hytönen, V. P. & Ihalainen, J. A., 18 Nov 2014, In : Biochemistry. 53, 45, p. 7076-7085 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons

    Habib, M., Serebryannikov, A. E., Caglayan, H., Vandenbosch, G. A. E. & Ozbay, E., Jun 2019, In : Plasmonics. 14, 3, p. 721-729 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission

    Saegusa, T., Sakai, H., Nagashima, H., Kobori, Y., Tkachenko, N. V. & Hasobe, T., 18 Sep 2019, In : Journal of the American Chemical Society. 141, 37, p. 14720-14727 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Counterion condensation in short cationic peptides: Limiting mobilities beyond the Onsager-Fuoss theory

    Wernersson, E., Heyda, J., Kubíčková, A., Křížek, T., Coufal, P. & Jungwirth, P., Mar 2012, In : ELECTROPHORESIS. 33, 6, p. 981-989 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators

    Auer, S., Nirschl, M., Schreiter, M. & Vikholm-Lundin, I., May 2011, In : Analytical and Bioanalytical Chemistry. 400, 5, p. 1387-1396 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering

    Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 1 Jul 2013, In : Journal of Membrane Science. 438, p. 29-37 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria

    Kaurola, P., Sharma, V., Vonk, A., Vattulainen, I. & Róg, T., 1 Sep 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 9, p. 2116-2122 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle

    Grabon, A., Orłowski, A., Tripathi, A., Vuorio, J., Javanainen, M., Róg, T., Lönnfors, M., McDermott, M. I., Siebert, G., Somerharju, P., Vattulainen, I. & Bankaitis, V. A., 2017, In : Journal of Biological Chemistry. 292, 35, p. 14438-14455 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Dynamics of a True Moving Bed separation process: Linear model identification and advanced process control

    Nogueira, I. B. R., Ribeiro, A. M., Martins, M. A. F., Rodrigues, A. E., Koivisto, H. & Loureiro, J. M., 30 Jun 2017, In : Journal of Chromatography A. 1504

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor: Experimental and artificial neural network model analysis

    Khanongnuch, R., Di Capua, F., Lakaniemi, A-M., Rene, E. R. & Lens, P. N. L., 2018, In : Process Biochemistry. 68, p. 171-181

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Effects of σ factor competition are promoter initiation kinetics dependent

    Kandavalli, V. K., Tran, H. & Ribeiro, A. S., 1 Oct 2016, In : Biochimica et Biophysica Acta: Gene Regulatory Mechanisms. 1859, 10, p. 1281-1288 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Efficient preparation and analysis of membrane and membrane protein systems

    Javanainen, M. & Martinez-Seara, H., Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2468-2482

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning

    Lehtonen, S. I., Taskinen, B., Ojala, E., Kukkurainen, S., Rahikainen, R., Riihimäki, T. A., Laitinen, O. H., Kulomaa, M. S. & Hytönen, V. P., 2015, In : Protein Engineering Design and Selection. 28, 1, p. 23-28 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Efficient production of NV colour centres in nanodiamonds using high-energy electron irradiation

    Dantelle, G., Slablab, A., Rondin, L., Lainé, F., Carrel, F., Bergonzo, P., Perruchas, S., Gacoin, T., Treussart, F. & Roch, J. F., Sep 2010, In : Journal of Luminescence. 130, 9, p. 1655-1658 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts

    Křížek, T., Kubíčková, A., Hladílková, J., Coufal, P., Heyda, J. & Jungwirth, P., 2014, In : ELECTROPHORESIS. 35, 5, p. 617-624 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Endocrine prevention and treatment of prostate cancer

    Tammela, T. L. J., 5 Sep 2012, In : Molecular and Cellular Endocrinology. 360, 1-2, p. 59-67 9 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  51. Published

    Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data

    Häkkinen, A. & Ribeiro, A. S., 1 Jan 2015, In : Bioinformatics. 31, 1, p. 69-75 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Evaluation of dry electrodes in canine heart rate monitoring

    Virtanen, J., Somppi, S., Törnqvist, H., Jeyhani, V., Fiedler, P., Gizatdinova, Y., Majaranta, P., Väätäjä, H., Cardó, A. V., Lekkala, J., Tuukkanen, S., Surakka, V., Vainio, O. & Vehkaoja, A., 1 Jun 2018, In : Sensors. 18, 6, 1757.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate

    Kulig, W., Jurkiewicz, P., Olzyńska, A., Tynkkynen, J., Javanainen, M., Manna, M., Rog, T., Hof, M., Vattulainen, I. & Jungwirth, P., 2015, In : Biochimica et Biophysica Acta: Biomembranes. 1848, 2, p. 422-432 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Functional and genetic analysis of the colon cancer network.

    Emmert-Streib, F., de Matos Simoes, R., Glazko, G., McDade, S., Haibe-Kains, B., Holzinger, A., Dehmer, M. & Campbell, F., 2014, In : BMC Bioinformatics. 15, Suppl 6, S6.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Functionalized lipids and surfactants for specific applications

    Kepczynski, M. & Róg, T., Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2362-2379

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts

    Jia, L., Sun, Z., Wu, X., Misteli, T. & Sharma, V., 1 Dec 2015, In : Genomics Data. 6, p. 277-279 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Global analysis of human nonreceptor tyrosine kinase specificity using high-density peptide microarrays

    Deng, Y., Alicea-Velázquez, N. L., Bannwarth, L., Lehtonen, S. I., Boggon, T. J., Cheng, H. C., Hytönen, V. P. & Turk, B. E., 3 Oct 2014, In : Journal of Proteome Research. 13, 10, p. 4339-4346 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer

    Rokade, S. S., Joshi, K. A., Mahajan, K., Patil, S., Tomar, G., Dubal, D. S., Parihar, V. S., Kitture, R., Bellare, J. R. & Ghosh, S., 2018, In : Bioinorganic Chemistry and Applications. 2018, 4924186.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    GSAR: Bioconductor package for Gene Set analysis in R

    Rahmatallah, Y., Zybailov, B., Emmert-Streib, F. & Glazko, G., 24 Jan 2017, In : BMC Bioinformatics. 18, 1, 61.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging

    Higashino, T., Nakatsuji, H., Fukuda, R., Okamoto, H., Imai, H., Matsuda, T., Tochio, H., Shirakawa, M., Tkachenko, N. V., Hashida, M., Murakami, T. & Imahori, H., 24 Mar 2017, In : ChemBioChem. 18, 10, p. 951-959 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains

    Milani, R., Houbenov, N., Fernandez-Palacio, F., Cavallo, G., Luzio, A., Haataja, J., Giancane, G., Saccone, M., Priimägi, A., Metrangolo, P. & Ikkala, O., 9 Mar 2017, In : CheM. 2, 3, p. 417-426 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Histone H2B ubiquitin ligases RNF20 and RNF40 in androgen signaling and prostate cancer cell growth

    Jääskeläinen, T., Makkonen, H., Visakorpi, T., Kim, J., Roeder, R. G. & Palvimo, J. J., 5 Mar 2012, In : Molecular and Cellular Endocrinology. 350, 1, p. 87-98 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications

    Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 2013, In : Acta Biomaterialia. 9, 5, p. 6450-6458 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    How the amyloid-β peptide and membranes affect each other: An extensive simulation study

    Poojari, C., Kukol, A. & Strodel, B., Feb 2013, In : Biochimica et Biophysica Acta: Biomembranes. 1828, 2, p. 327-339 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative

    Mobarak, E., Javanainen, M., Kulig, W., Honigmann, A., Sezgin, E., Aho, N., Eggeling, C., Rog, T. & Vattulainen, I., Nov 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 11, p. 2436-2445

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering

    Vuornos, K., Björninen, M., Talvitie, E., Paakinaho, K., Kellomäki, M., Huhtala, H., Miettinen, S., Seppänen-Kaijansinkko, R. & Haimi, S., 1 Mar 2016, In : Tissue Engineering Part A. 22, 5-6, p. 513-523 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Human adipose tissue extract induces angiogenesis and adipogenesis in vitro

    Sarkanen, J. R., Kaila, V., Mannerström, B., Räty, S., Kuokkanen, H., Miettinen, S. & Ylikomi, T., 1 Jan 2012, In : Tissue Engineering Part A. 18, 1-2, p. 17-25 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens

    Chen, J., Xi, J., Tian, Y., Bova, G. S. & Zhang, H., Aug 2013, In : Proteomics. 13, 15, p. 2268-2277 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1

    Kuleta, P., Sarewicz, M., Postila, P., Róg, T. & Osyczka, A., 1 Oct 2016, In : Biochimica et Biophysica Acta: Bioenergetics. 1857, 10, p. 1661-1668 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Improved water services cooperation through clarification of rules and roles

    Inha, L. M., Katko, T. S. & Rajala, R. P., 19 Oct 2019, In : Water (Switzerland). 11, 10, 2172.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels

    Wang, S., Nawale, G. N., Oommen, O. P., Hilborn, J. & Varghese, O. P., 21 Aug 2019, In : Polymer Chemistry. 10, 31, p. 4322-4327 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry

    Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D., 16 Aug 2017, In : ACS Chemical Neuroscience. 8, 8, p. 1767-1778 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives

    Akimova, A. V., Rychkov, G. N., Grin, M. A., Filippova, N. A., Golovina, G. V., Durandin, N. A., Vinogradov, A. M., Kokrashvili, T. A., Mironov, A. F., Shtil, A. A. & Kuzmin, V. A., 2015, In : ACTA NATURAE. 7, 1, p. 109-116 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

    Liimatainen, K., Kananen, L., Latonen, L. & Ruusuvuori, P., 15 Feb 2019, In : BMC Bioinformatics. 20, 1, 80.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay

    Näreoja, T., Ebner, A., Gruber, H. J., Taskinen, B., Kienberger, F., Hänninen, P. E., Hytönen, V. P., Hinterdorfer, P. & Härmä, H., 2014, In : Analytical and Bioanalytical Chemistry. 406, 2, p. 493-503 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    Laser-induced primary and secondary hemostasis dynamics and mechanisms in relation to selective photothermolysis of port wine stains

    Heger, M., Salles, I. I., Bezemer, R., Cloos, M. A., Mordon, S. R., Bégu, S., Deckmyn, H. & Beek, J. F., Sep 2011, In : JOURNAL OF DERMATOLOGICAL SCIENCE. 63, 3, p. 139-147 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Light-fuelled transport of large dendrimers and proteins

    Koskela, J. E., Liljeström, V., Lim, J., Simanek, E. E., Ras, R. H. A., Priimagi, A. & Kostiainen, M. A., 14 May 2014, In : Journal of the American Chemical Society. 136, 19, p. 6850-6853 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Lipid hydration and mobility: An interplay between fluorescence solvent relaxation experiments and molecular dynamics simulations

    Jurkiewicz, P., Cwiklik, L., Jungwirth, P. & Hof, M., Jan 2012, In : Biochimie. 94, 1, p. 26-32 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  81. Published

    Lipid membranes: Theory and simulations bridged to experiments

    Vattulainen, I. & Róg, T., 1 Oct 2016, In : Biochimica et Biophysica Acta: Biomembranes. 1858, 10, p. 2251-2253 3 p.

    Research output: Contribution to journalEditorialScientificpeer-review

  82. Published

    Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation

    Manna, M., Javanainen, M., Martinez-Seara Monne, H., Gabius, H-J., Rog, T. & Vattulainen, I., 1 May 2017, In : Biochimica et Biophysica Acta: Biomembranes. 1859, 5, p. 870-878 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components

    Rinne, J., Keskinen, J., Berger, P. R., Lupo, D. & Valkama, M., 16 Nov 2018, In : Sensors (Basel, Switzerland). 18, 11

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    Mechanisms of acceleration and retardation of water dynamics by ions

    Stirnemann, G., Wernersson, E., Jungwirth, P. & Laage, D., 14 Aug 2013, In : Journal of the American Chemical Society. 135, 32, p. 11824-11831 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Methods for simultaneous robot-world-hand–eye calibration: A comparative study

    Ali, I., Suominen, O., Gotchev, A. & Morales, E. R., 2 Jun 2019, In : Sensors (Switzerland). 19, 12, 2837.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Modeling of anaerobic degradation of solid slaughterhouse waste: Inhibition effects of long-chain fatty acids or ammonia

    Lokshina, L. Y., Vavilin, V. A., Salminen, E. & Rintala, J., Apr 2003, In : Applied Biochemistry and Biotechnology. 109, 1-3, p. 15-32 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Modification of olivomycin A at the side chain of the aglycon yields the derivative with perspective antitumor characteristics

    Tevyashova, A. N., Shtil, A. A., Olsufyeva, E. N., Luzikov, Y. N., Reznikova, M. I., Dezhenkova, L. G., Isakova, E. B., Bukhman, V. M., Durandin, N. A., Vinogradov, A. M., Kuzmin, V. A. & Preobrazhenskaya, M. N., 15 Dec 2011, In : BIOORGANIC AND MEDICINAL CHEMISTRY. 19, 24, p. 7387-7393 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  88. Published

    Molecular mechanism for inhibition of twinfilin by phosphoinositides

    Hakala, M., Kalimeri, M., Enkavi, G., Vattulainen, I. & Lappalainen, P., 1 Jan 2018, In : Journal of Biological Chemistry. 293, 13, p. 4818-4829 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone

    Ylilauri, M., Mattila, E., Nurminen, E. M., Käpylä, J., Niinivehmas, S. P., Määttä, J. A., Pentikäinen, U., Ivaska, J. & Pentikäinen, O. T., 2013, In : Biochimica et biophysica acta: proteins and proteomics. 1834, 10, p. 1988-1997 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    Molecular mechanisms of ion-specific effects on proteins

    Rembert, K. B., Paterová, J., Heyda, J., Hilty, C., Jungwirth, P. & Cremer, P. S., 20 Jun 2012, In : Journal of the American Chemical Society. 134, 24, p. 10039-10046 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters

    Chevrier, D. M., Raich, L., Rovira, C., Das, A., Luo, Z., Yao, Q., Chatt, A., Xie, J., Jin, R., Akola, J. & Zhang, P., 14 Nov 2018, In : Journal of the American Chemical Society. 140, 45, p. 15430-15436 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

    Teppola, H., Sarkanen, J. R., Jalonen, T. O. & Linne, M-L., 2016, In : Neurochemical Research. 41, 4, p. 731-747

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Multi-stable dynamics of the non-adiabatic repressilator

    Potapov, I., Zhurov, B. & Volkov, E., 6 Mar 2015, In : Journal of the Royal Society. Interface. 12, 104, 20141315.

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress

    Oksala, N. K. J., Ekmekçi, F. G., Özsoy, E., Kirankaya, Ş., Kokkola, T., Emecen, G., Lappalainen, J., Kaarniranta, K. & Atalay, M., 1 Jan 2014, In : REDOX BIOLOGY. 3, p. 25-28 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    NetBioV: An R package for visualizing large network data in biology and medicine

    Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2 Apr 2014, In : Bioinformatics. 30, 19, p. 2834-2836 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats

    Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L., Apr 2012, In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101, 2, p. 239-245 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    Non-Brownian diffusion in lipid membranes: Experiments and simulations

    Metzler, R., Jeon, J. H. & Cherstvy, A. G., 2016, In : Biochimica et Biophysica Acta: Biomembranes. 215, p. 173–185

    Research output: Contribution to journalReview ArticleScientificpeer-review

  98. Published

    Non-coding RNAs in DNA damage and repair

    Sharma, V. & Misteli, T., 27 Jun 2013, In : FEBS Letters. 587, 13, p. 1832-1839 8 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  99. Published

    Non-intersecting leaf insertion algorithm for tree structure models

    Åkerblom, M., Raumonen, P., Casella, E., Disney, M. I., Danson, F. M., Gaulton, R., Schofield, L. A. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170045.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage

    Akimova, A. V., Grin, M. A., Golovina, G. V., Kokrashvili, T. A., Vinogradov, A. M., Mironov, A. F., Rychkov, G. N., Shtil, A. A., Kuzmin, V. A. & Durandin, N. A., 2014, In : DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 454, 1, p. 17-20 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

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