Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate

    Lenk, K., Satuvuori, E., Lallouette, J., Ladrón-de-Guevara, A., Berry, H. & Hyttinen, J. A. K., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 19 p., 92.

    Research output: Contribution to journalArticleScientificpeer-review

  2. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Advanced boundary electrode modeling for tES and parallel tES/EEG

    Pursiainen, S., Agsten, B., Wagner, S. & Wolters, C. H., 2017, In : IEEE Transactions on Neural Systems and Rehabilitation Engineering. 26, 1, p. 37-44

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  5. Published

    Analysis of apoptosis-related genes in patients with clinically isolated syndrome and their association with conversion to multiple sclerosis

    Hagman, S., Kolasa, M., Basnyat, P., Helminen, M., Kähönen, M., Dastidar, P., Lehtimäki, T. & Elovaara, I., 15 Mar 2015, In : JOURNAL OF NEUROIMMUNOLOGY. 280, p. 43-48 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    A Primal Neural Network for Online Equality-Constrained Quadratic Programming

    Chen, K. & Zhang, Z., 2018, In : Cognitive Computation. 10, 2, p. 381–388 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    A realistic, accurate and fast source modeling approach for the EEG forward problem

    Miinalainen, T., Rezaei, A., Us, D., Nüßing, A., Engwer, C., Wolters, C. H. & Pursiainen, S., 2019, In : NeuroImage. 184, 1, p. 56-67 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Assessment of PIV performance in validating CFD models from nasal cavity CBCT scans

    Ormiskangas, J., Valtonen, O., Kivekäs, I., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Harju, T., Saarenrinne, P. & Rautiainen, M., 1 Nov 2020, In : Respiratory Physiology and Neurobiology. 282, 9 p., 103508.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Assessment of respiratory effort during sleep with noninvasive techniques

    Tenhunen, M., Hasan, J. & Himanen, S. L., 1 Dec 2015, In : Sleep Medicine Reviews. 24, p. 103-104 2 p.

    Research output: Contribution to journalArticleScientific

  11. Published

    Association between soluble L-selectin and anti-JCV antibodies in natalizumab-treated relapsing-remitting MS patients

    Basnyat, P., Hagman, S., Kolasa, M., Koivisto, K., Verkkoniemi-Ahola, A., Airas, L. & Elovaara, I., 1 Jul 2015, In : Multiple Sclerosis and Related Disorders. 4, 4, p. 334-338 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Astrocyte lineage cells are essential for functional neuronal differentiation and synapse maturation in human iPSC-derived neural networks

    Klapper, S. D., Garg, P., Dagar, S., Lenk, K., Gottmann, K. & Nieweg, K., 2019, In : Glia. 67, 10, p. 1893-1909 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Atomistic fingerprint of hyaluronan–CD44 binding

    Vuorio, J., Vattulainen, I. & Martinez-Seara, H., 1 Jul 2017, In : PLoS Computational Biology. 13, 7, e1005663.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J., 1 Nov 2014, In : EPILEPSY RESEARCH. 108, 9, p. 1675-1679 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Automatic assessment of the myoclonus severity from videos recorded according to standardized Unified Myoclonus Rating Scale protocol and using human pose and body movement analysis

    Hyppönen, J., Hakala, A., Annala, K., Zhang, H., Peltola, J., Mervaala, E. & Kälviäinen, R., 1 Mar 2020, In : Seizure. 76, p. 72-78 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Automatic objective thresholding to detect neuronal action potentials

    Tanskanen, J. M. A., Kapucu, F. E., Välkki, I. & Hyttinen, J. A. K., 29 Aug 2016, Proceedings of 2016 24th European Signal Processing Conference (EUSIPCO). p. 662-666 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  17. Published

    Building new computational models to support health behavior change and maintenance: new opportunities in behavioral research

    Spruijt-Metz, D., Hekler, E., Saranummi, N., Intille, S., Korhonen, I., Nilsen, W., Rivera, D. E., Spring, B., Michie, S., Asch, D. A., Sanna, A., Salcedo, V. T., Kukakfa, R. & Pavel, M., 17 Sep 2015, In : Translational Behavioral Medicine. 5, 3, p. 335-346 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Cell culture chamber with gas supply for prolonged recording of human neuronal cells on microelectrode array

    Kreutzer, J., Ylä-Outinen, L., Mäki, A., Ristola, M., Narkilahti, S. & Kallio, P., 15 Mar 2017, In : Journal of Neuroscience Methods. 280, p. 27-35 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    CNN-based edge filtering for object proposals

    Waris, M. A., Iosifidis, A. & Gabbouj, M., 2 Jun 2017, In : Neurocomputing. 266, p. 631-640

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Cognitive load and metacognitive confidence extraction from pupillary response

    Gavas, R. D., Tripathy, S. R., Chatterjee, D. & Sinha, A., 1 Dec 2018, In : Cognitive Systems Research. 52, p. 325-334 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Comparison of eye movement filters used in HCI

    Špakov, O., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 281-284 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Published

    Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia

    Tohka, J., Moradi, E., Huttunen, H., Alzheimer’s Disease Neuroimaging Initiative & Alzheimer’s Disease Neuroimaging Initiative 2, 2016, In : Neuroinformatics. 14, 3, p. 279-296 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation

    Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S., 2014, In : OTOLOGY AND NEUROTOLOGY. 35, 4

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Computational modeling of growth in cortial cultures using the NETMORPH simulation tool

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2010, Neuroscience 2010, 40th Annual Meeting, San Diego, USA, 13-17 November 2010. p. 2 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P203 1 p. P203. (Annual Computational Neuroscience Meeting CNS; vol. 12).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Published

    Computational tools for assessing the properties of 2D neural cell cultures

    Acimovic, J., Teppola, H., Selinummi, J. J. & Linne, M-L., 13 Jul 2009, Eighteenth Annual Computational Neuroscience Meeting: CNS*2009. Johnson, D. (ed.). Berlin: BioMed Central, Vol. 10 (Suppl 1). p. P170 1 p. P170

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Published

    Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

    Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Cortical spreading depression in alpha-synuclein knockout mice

    Pelkonen, A. & Yavich, L., Jan 2012, In : SYNAPSE. 66, 1, p. 81-84 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies

    Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J., Mar 2011, In : European Journal of Neurology. 18, 3, p. 402-409 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    COX-2 regulates the proliferation of glioma stem like cells

    Sharma, V., Dixit, D., Ghosh, S. & Sen, E., Oct 2011, In : NEUROCHEMISTRY INTERNATIONAL. 59, 5, p. 567-571 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 20 Sep 2018.

    Research output: Other conference contributionPaper, poster or abstractScientific

  33. Published

    Data-driven study of synchronous population activity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 29 Oct 2018, In : BMC Neuroscience. 19, Suppl 2, p. 68-69 1 p.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  34. Published

    Deep audio-visual saliency: Baseline model and data

    Tavakoli, H. R., Borji, A., Kannala, J. & Rahtu, E., 6 Feb 2020, Proceedings ETRA 2020 Short Papers - ACM Symposium on Eye Tracking Research and Applications, ETRA 2020. Spencer, S. N. (ed.). ACM, 3

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Published

    Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K., 2015, In : NeuroImage: Clinical. 7, p. 823-829 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Diffusion tensor imaging and disability progression in multiple sclerosis: A 4-year follow-up study

    Kolasa, M., Hakulinen, U., Brander, A., Hagman, S., Dastidar, P., Elovaara, I. & Sumelahti, M-L., Jan 2019, In : Brain and Behavior. 9, 1, e01194.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Disconnection between periodic leg movements and cortical arousals in spinal cord injury

    Salminen, A. V., Manconi, M., Rimpilä, V., Luoto, T. M., Koskinen, E., Ferri, R., Öhman, J. & Polo, O., 2013, In : JOURNAL OF CLINICAL SLEEP MEDICINE. 9, 11, p. 1207-1209 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study

    Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I., May 2011, In : JOURNAL OF NEUROIMMUNOLOGY. 234, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Distance-based human action recognition using optimized class representations

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Aug 2015, In : Neurocomputing. 161, p. 47-55 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    DropELM: Fast neural network regularization with Dropout and DropConnect

    Iosifidis, A., Tefas, A. & Pitas, I., 25 Aug 2015, In : Neurocomputing. 162, p. 57-66 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Effect of rhodopsin phosphorylation on dark adaptation in mouse rods

    Berry, J., Frederiksen, R., Yao, Y., Nymark, S., Chen, J. & Cornwall, C., 29 Jun 2016, In : Journal of Neuroscience. 36, 26, p. 6973-6987 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells

    Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H., 2015, In : Investigative Ophthalmology and Visual Science. 56, 11, p. 6265-6274 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Effects of exogenous alpha-synuclein on stimulated dopamine overflow in dorsal striatum

    Pelkonen, A., Kallunki, P. & Yavich, L., 25 Oct 2013, In : Neuroscience Letters. 554, p. 141-145 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Effects of local structure of neuronal networks on spiking activity in silico

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 18 Jul 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P202 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Published

    Effects of structure on spontaneous activity in simulated neuronal networks

    Mäki-Marttunen, T., Acimovic, J., Ruohonen, K. & Linne, M-L., 11 Apr 2011, Proceedings of Mathematical Neuroscience (ICMS 2011), April 11-13, 2011, Edinburgh, Scotland.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Published

    Elevated levels of soluble CD26 and CD30 in multiple sclerosis

    Basnyat, P., Natarajan, R., Vistbakka, J., Lehtikangas, M., Airas, L., Matinlauri, I., Elovaara, I. & Hagman, S., 1 Nov 2015, In : Clinical and Experimental Neuroimmunology. 6, 4, p. 419-425 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Emergence of global and local structural features during development of neuronal networks

    Acimovic, J., 6 Jun 2011, Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere: TICSP, (TICSP Series ; vol. 57).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Epileptiform and periodic EEG activities induced by rapid sevoflurane anaesthesia induction

    Sonkajärvi, E., Rytky, S., Alahuhta, S., Suominen, K., Kumpulainen, T., Ohtonen, P., Karvonen, E. & Jäntti, V., 1 Mar 2018, In : Clinical Neurophysiology. 129, 3, p. 638-645 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2001, In : Journal of Physiology: Paris. 95, 1-6, p. 497 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Eustachian tube mucosal inflammation scale validation based on digital video images

    Kivekäs, I., Pöyhönen, L., Aarnisalo, A., Rautiainen, M. & Poe, D., 1 Dec 2015, In : OTOLOGY AND NEUROTOLOGY. 36, 10, p. 1748-1752 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

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