Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Published

    Evaluation of the different sleep-disordered breathing patterns of the compressed tracheal sound

    Tenhunen, M., Huupponen, E., Hasan, J., Heino, O. & Himanen, S. L., 1 Aug 2015, In : Clinical Neurophysiology. 126, 8, p. 1557-1563 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  2. Published

    Experiments of the sonification of the sleep electroencephalogram

    Franco, P. & Värri, A., 11 May 2015, In : Finnish Journal of eHealth and eWelfare. 7, 2-3, p. 65-74 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke

    Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T., Oct 2012, In : CEREBROVASCULAR DISEASES. 34, 3, p. 191-198 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2000, In : Journal of Physiology: Paris. 94, 5-6, p. 555-567 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Extreme learning machine based supervised subspace learning

    Iosifidis, A., 2015, In : Neurocomputing. 167, p. 158–164 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Fault tolerant machine learning for nanoscale cognitive radio

    Pajarinen, J., Peltonen, J. & Uusitalo, M. A., Feb 2011, In : Neurocomputing. 74, 5, p. 753-764 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells

    Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R., Apr 2013, In : Journal of Neuroscience Methods. 215, 1, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    From in silico astrocyte cell models to neuron-astrocyte network models: A review

    Oschmann, F., Berry, H., Obermayer, K. & Lenk, K., 2018, In : BRAIN RESEARCH BULLETIN. 136, p. 76-84

    Research output: Contribution to journalReview ArticleScientificpeer-review

  9. Published

    Functional brain segmentation using inter-subject correlation in fMRI

    Kauppi, J-P., Pajula, J., Niemi, J., Hari, R. & Tohka, J., 1 May 2017, In : Human Brain Mapping. 38, 5, p. 2643-2665 23 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Gaze gestures or dwell-based interaction?

    Hyrskykari, A., Istance, H. & Vickers, S., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 229-232 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. Published

    Haptic feedback to gaze events

    Kangas, J., Rantala, J., Majaranta, P., Isokoski, P. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 11-18 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI

    Pajula, J. & Tohka, J., 2016, In : Computational Intelligence and Neuroscience. 2016, 2094601.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Human anterior thalamic nuclei are involved in emotion-attention interaction

    Sun, L., Peräkylä, J., Polvivaara, M., Öhman, J., Peltola, J., Lehtimäki, K., Huhtala, H. & Hartikainen, K. M., 1 Nov 2015, In : NEUROPSYCHOLOGIA. 78, p. 88-94 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Human-robot interactive learning architecture using ontologies and symbol manipulation

    Angleraud, A., Houbre, Q., Kyrki, V. & Pieters, R., 6 Nov 2018, RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE, p. 384-389 6 p. (IEEE RO-MAN).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans

    Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J., 28 May 2014, In : JOURNAL OF CLINICAL AND EXPERIMENTAL NEUROPSYCHOLOGY. 36, 5, p. 540-550 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity

    Rimpiläinen, V., Koulouri, A., Lucka, F., Kaipio, J. P. & Wolters, C. H., 1 Mar 2019, In : NeuroImage. 188, p. 252-260 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Improvement of computational efficiency of a biochemical plasticity model

    Lehtimäki, M., Paunonen, L. & Linne, M-L., 29 Sep 2018, In : BMC Neuroscience. 19, Suppl 2, p. 66-66 P130.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  18. Published

    Improving efficiency in convolutional neural networks with multilinear filters

    Tran, D. T., Iosifidis, A. & Gabbouj, M., 1 Sep 2018, In : Neural Networks. 105, p. 328-339 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

    Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry

    Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D., 16 Aug 2017, In : ACS Chemical Neuroscience. 8, 8, p. 1767-1778 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    In silico study on structure and dynamics in bursting neuronal networks

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 13 Oct 2012, Neuroscience 2012; 42nd Annual Meeting, New Orleans, USA, October 14-18, 2012. Society for Neuroscience (SfN), 1 p. 300.26/DDD70

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    Learning sparse representations for view-independent human action recognition based on fuzzy distances

    Iosifidis, A., Tefas, A. & Pitas, I., 9 Dec 2013, In : Neurocomputing. 121, p. 344-353 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Look and lean: Accurate head-assisted eye pointing

    Špakov, O., Isokoski, P. & Majaranta, P., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 35-42 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Measures of spike train synchrony for data with multiple time scales

    Satuvuori, E., Mulansky, M., Bozanic, N., Malvestio, I., Zeldenrust, F., Lenk, K. & Kreuz, T., 1 Aug 2017, In : Journal of Neuroscience Methods. 287, p. 25-38 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients

    Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I., 15 Sep 2012, In : JOURNAL OF NEUROIMMUNOLOGY. 250, 1-2, p. 106-110 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

    Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience. 11, 13, p. 1914–1924 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling

    Heikkinen, H., Vinberg, F., Nymark, S. & Koskelainen, A., May 2011, In : Journal of Neurophysiology. 105, 5, p. 2309-2318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    MetrIntMeas a novel metric for measuring the intelligence of a swarm of cooperating agents

    Iantovics, L. B., Emmert-Streib, F. & Arik, S., 1 Oct 2017, In : Cognitive Systems Research. 45, p. 17-29 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI

    Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R., 29 May 2013, In : NeuroReport. 24, 8, p. 440-444 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

    Teppola, H., Sarkanen, J. R., Jalonen, T. O. & Linne, M-L., 2016, In : Neurochemical Research. 41, 4, p. 731-747

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J., Dec 2012, In : EPILEPSIA. 53, 12

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters

    Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T., 1 Aug 2018, In : Neuroscience. 384, p. 214-223 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Network-wide adaptive burst detection depicts neuronal activity with improved accuracy

    Välkki, I. A., Lenk, K., Mikkonen, J. E., Kapucu, F. E. & Hyttinen, J. A. K., 31 May 2017, In : Frontiers in Computational Neuroscience. 11, 40.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Neural networks, cell cultures and some older work on data analysis.

    Acimovic, J., 15 Jun 2009.

    Research output: Other conference contributionPaper, poster or abstractScientific

  37. Published

    Neurofunctional plasticity in fraction learning: An fMRI training study

    Wortha, S. M., Bloechle, J., Ninaus, M., Kiili, K., Lindstedt, A., Bahnmueller, J., Moeller, K. & Klein, E., 1 Dec 2020, In : Trends in Neuroscience and Education. 21, 15 p., 100141.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Neuromuscular pathology in mice lacking alpha-synuclein

    Pelkonen, A. & Yavich, L., 10 Jan 2011, In : Neuroscience Letters. 487, 3, p. 350-353 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats

    Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L., Apr 2012, In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101, 2, p. 239-245 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Nonlinear recurrent neural networks for finite-time solution of general time-varying linear matrix equations

    Xiao, L., Liao, B., Li, S. & Chen, K., Feb 2018, In : Neural Networks. 98, p. 102-113 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    One-Class Classification based on Extreme Learning and Geometric Class Information

    Iosifidis, A., Mygdalis, V., Tefas, A. & Pitas, I., 2016, In : Neural Processing Letters. p. 1-16 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    On the effect of network structure and synaptic mechanisms on sustained bursting activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 8 Jul 2013, Twenty Second Annual Computational Neuroscience Meeting: CNS*2013. Cymbalyuk, G. & Prinz, A. (eds.). Paris, France: BioMed Central, Vol. Volume 14 Suppl 1. p. P247 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. Published

    Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Overview of Sources and Characteristics of Nanoparticles in Urban Traffic-Influenced Areas

    Rönkkö, T. & Timonen, H., 2019, In : Journal of Alzheimer's Disease. 72, 1, p. 15-28 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Patient-specific induced pluripotent stem cell—derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency

    Polinati, P. P., Ilmarinen, T., Trokovic, R., Hyotylainen, T., Otonkoski, T., Suomalainen, A., Skottman, H. & Tynitiina, T., 2015, In : Investigative Ophthalmology and Visual Science. 56, 5, p. 3371-3382 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway

    Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S., 1 May 2015, In : CELL DEATH AND DISEASE. 6, 5, e1752.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Post-stroke depression and depression-executive dysfunction syndrome are associated with recurrence of ischaemic stroke

    Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J., Vataja, R. & Erkinjuntti, T., Dec 2013, In : CEREBROVASCULAR DISEASES. 36, 5-6, p. 336-343 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

    Moradi, E., Khundrakpam, B., Lewis, J. D., Evans, A. C. & Tohka, J., 2017, In : NeuroImage. 144, A, p. 128–141

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth

    Rezaei, A., Koulouri, A. & Pursiainen, S., 2020, In : Brain Topography. 33, 2, p. 161-175 15 p.

    Research output: Contribution to journalArticleScientificpeer-review