Tampere University of Technology

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Publications

  1. Article › Scientific › Peer-reviewed
  2. Published

    1700 nm dispersion managed mode-locked bismuth fiber laser

    Noronen, T., Firstov, S., Dianov, E. & Okhotnikov, O. G., 21 Apr 2016, In : Scientific Reports. 6, 24876.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data

    Emmert-Streib, F., De Matos Simoes, R., Tripathi, S., Glazko, G. V. & Dehmer, M., 2012, In : Scientific Reports. 2, 513.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Active optical clock based on four-level quantum system

    Zhang, T. G., Wang, Y. F., Zang, X. R., Zhuang, W. & Chen, J. B., Jun 2013, In : Chinese Science Bulletin. 58, 17, p. 2033-2038 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Added value of autoregulation and multi-step kinetics of transcription initiation

    Prajapat, M. K. & Ribeiro, A. S., 1 Nov 2018, In : Royal Society Open Science. 5, 11, 181170.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Aerosol gas exchange system (AGES) for nanoparticle sampling at elevated temperatures: Modeling and experimental characterization

    Bainschab, M., Martikainen, S., Keskinen, J., Bergmann, A. & Karjalainen, P., 20 Nov 2019, In : Scientific Reports. 9, 1, 12 p., 17149.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    A Highly Efficient Sensor Platform Using Simply Manufactured Nanodot Patterned Substrates

    Rasappa, S., Ghoshal, T., Borah, D., Senthamaraikannan, R., Holmes, J. D. & Morris, M. A., 20 Aug 2015, In : Scientific Reports. 5, 13270.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

    Valkonen, M., Ruusuvuori, P., Kartasalo, K., Nykter, M., Visakorpi, T. & Latonen, L., 20 Mar 2017, In : Scientific Reports. 7, 44831.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    An ensemble of classifiers based on different texture descriptors for texture classification

    Paci, M., Nanni, L. & Severi, S., Jul 2013, In : Journal of King Saud University - Science. 25, 3, p. 235-244 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    An Optical Method for the In-Vivo Characterization of the Biomechanical Response of the Right Ventricle

    Soltani, A., Lahti, J., Järvelä, K., Curtze, S., Laurikka, J., Hokka, M. & Kuokkala, V. T., 1 Dec 2018, In : Scientific Reports. 8, 1, 6831.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex

    Postila, P. A., Kaszuba, K., Kuleta, P., Vattulainen, I., Sarewicz, M., Osyczka, A. & Róg, T., 26 Sep 2016, In : Scientific Reports. 6, 33607.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Automatic classification of IgA endomysial antibody test for celiac disease: a new method deploying machine learning

    Caetano dos Santos, F. L., Michalek, I. M., Laurila, K., Kaukinen, K., Hyttinen, J. & Lindfors, K., 1 Dec 2019, In : Scientific Reports. 9, 1, 9217.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Automatic knee osteoarthritis diagnosis from plain radiographs: A deep learning-based approach

    Tiulpin, A., Thevenot, J., Rahtu, E., Lehenkari, P. & Saarakkala, S., 1 Dec 2018, In : Scientific Reports. 8, 1, 1727.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Automatic Posture and Movement Tracking of Infants with Wearable Movement Sensors

    Airaksinen, M., Räsänen, O., Ilén, E., Häyrinen, T., Kivi, A., Marchi, V., Gallen, A., Blom, S., Varhe, A., Kaartinen, N., Haataja, L. & Vanhatalo, S., 13 Jan 2020, In : Scientific Reports. 10, 1, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Automatization and stress analysis data of CoCr laser weld fatigue tests

    Kanerva, M., Besharat, Z., Pärnänen, T., Jokinen, J., Honkanen, M., Sarlin, E., Göthelid, M. & Schlenzka, D., 1 Oct 2019, In : Data in Brief. 26, 104374.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Behaviour of one-step spray-coated carbon nanotube supercapacitor in ambient light harvester circuit with printed organic solar cell and electrochromic display

    Tuukkanen, S., Välimäki, M., Lehtimäki, S., Vuorinen, T. & Lupo, D., 9 Mar 2016, In : Scientific Reports. 6, 22967.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Bioinspired underwater locomotion of light-driven liquid crystal gels

    Shahsavan, H., Aghakhani, A., Zeng, H., Guo, Y., Davidson, Z. S., Priimägi, A. & Sitti, M., 10 Mar 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 10, p. 5125-5133 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Brain hemodynamic activity during viewing and re-viewing of comedy movies explained by experienced humor

    Jääskeläinen, I. P., Pajula, J., Tohka, J., Lee, H. J., Kuo, W. J. & Lin, F. H., 21 Jun 2016, In : Scientific Reports. 6, 27741.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Caustics and rogue waves in an optical sea

    Mathis, A., Froehly, L., Toenger, S., Dias, F., Genty, G. & Dudley, J. M., 6 Aug 2015, In : Scientific Reports. 5, 12822.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Changes in hemodynamics associated with metabolic syndrome are more pronounced in women than in men

    Kangas, P., Tikkakoski, A., Kettunen, J., Eräranta, A., Huhtala, H., Kähönen, M., Sipilä, K., Mustonen, J. & Pörsti, I., 5 Dec 2019, In : Scientific Reports. 9, 1, 11 p., 18377.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Chromatin organization regulates viral egress dynamics

    Aho, V., Myllys, M., Ruokolainen, V., Hakanen, S., Mäntylä, E., Virtanen, J., Hukkanen, V., Kühn, T., Timonen, J., Mattila, K., Larabell, C. A. & Vihinen-Ranta, M., 1 Dec 2017, In : Scientific Reports. 7, 1, 3692.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Combining deep learning with token selection for patient phenotyping from electronic health records

    Yang, Z., Dehmer, M., Yli-Harja, O. & Emmert-Streib, F., 1 Dec 2020, In : Scientific Reports. 10, 1, 1432.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells

    Mikhailova, A., Jylhä, A., Rieck, J., Nättinen, J., Ilmarinen, T., Veréb, Z., Aapola, U., Beuerman, R., Petrovski, G., Uusitalo, H. & Skottman, H., 1 Oct 2015, In : Scientific Reports. 5, 14684.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Comparison of electron injection and recombination on TiO2 nanoparticles and ZnO nanorods photosensitized by phthalocyanine

    Virkki, K., Tervola, E., Ince, M., Torres, T. & Tkachenko, N. V., 11 Jul 2018, In : Royal Society Open Science. 5, 7, 180323.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Curved optical solitons subject to transverse acceleration in reorientational soft matter

    Laudyn, U. A., Kwaśny, M., Sala, F. A., Karpierz, M. A., Smyth, N. F. & Assanto, G., 1 Dec 2017, In : Scientific Reports. 7, 1, 12385.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    DroneRF dataset: A dataset of drones for RF-based detection, classification and identification

    Allahham, MHD. S., Al-Sa'd, M. F., Al-Ali, A., Mohamed, A., Khattab, T. & Erbad, A., 1 Oct 2019, In : Data in Brief. 26, 104313.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Effects of Sintering Temperature on Crystallization and Fabrication of Porous Bioactive Glass Scaffolds for Bone Regeneration

    Erasmus, E. P., Johnson, O. T., Sigalas, I. & Massera, J., 1 Dec 2017, In : Scientific Reports. 7, 1, 6046.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Emergent rogue wave structures and statistics in spontaneous modulation instability

    Toenger, S., Godin, T., Billet, C., Dias, F., Erkintalo, M., Genty, G. & Dudley, J. M., 20 May 2015, In : Scientific Reports. 5, 10380.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Entropy analysis of word-length series of natural language texts: Effects of text language and genre

    Kalimeri, M., Constantoudis, V., Papadimitriou, C., Karamanos, K., Diakonos, F. K. & Papageorgiou, H., Sep 2012, In : INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 22, 9, 1250223.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Facile strain analysis of largely bending films by a surface-labelled grating method

    Akamatsu, N., Tashiro, W., Saito, K., Mamiya, J. I., Kinoshita, M., Ikeda, T., Takeya, J., Fujikawa, S., Priimagi, A. & Shishido, A., 20 Jun 2014, In : Scientific Reports. 4, 5377.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    First passage time distribution in heterogeneity controlled kinetics: Going beyond the mean first passage time

    Godec, A. & Metzler, R., 8 Feb 2016, In : Scientific Reports. 6, 20349.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Gaussian Light Model in Brightfield Optical Projection Tomography

    Koskela, O., Montonen, T., Belay, B., Figueiras, E., Pursiainen, S. & Hyttinen, J., 26 Sep 2019, In : Scientific Reports. 9, 1

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Genetic similarity of biological samples to counter bio-hacking of DNA-sequencing functionality

    Islam, M. S., Ivanov, S., Robson, E., Dooley-Cullinane, T., Coffey, L., Doolin, K. & Balasubramaniam, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 8684.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

    Honkela, A., Peltonen, J., Topa, H., Charapitsa, I., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M., 20 Oct 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 42, p. 13115-13120 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

    Turner, K. M., Sun, Y., Ji, P., Granberg, K. J., Bernard, B., Hu, L., Cogdell, D. E., Zhou, X., Yli-Harja, O., Nykter, M., Shmulevich, I., Yung, W. K. A., Fuller, G. N. & Zhang, W., 17 Mar 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3421-3426 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico

    Mobarak, E., Håversen, L., Manna, M., Rutberg, M., Levin, M., Perkins, R., Rog, T., Vattulainen, I. & Borén, J., 1 Dec 2018, In : Scientific Reports. 8, 1, 13600.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Highly ductile amorphous oxide at room temperature and high strain rate

    Frankberg, E. J., Kalikka, J., Ferré, F. G., Joly-Pottuz, L., Salminen, T., Hintikka, J., Hokka, M., Koneti, S., Douillard, T., Le Saint, B., Kreiml, P., Cordill, M. J., Epicier, T., Stauffer, D., Vanazzi, M., Roiban, L., Akola, J., Fonzo, F. D., Levänen, E. & Masenelli-Varlot, K., 15 Nov 2019, In : Science. 366, 6467, p. 864-869 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Highly-Sensitive Refractive Index Sensing by Near-infrared Metatronic Nanocircuits

    Rashed, A. R., Gudulluoglu, B., Yun, H. W., Habib, M., Boyaci, I. H., Hong, S. H., Ozbay, E. & Caglayan, H., 1 Dec 2018, In : Scientific Reports. 8, 1, 11457.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Human iPSC derived disease model of MERTK-associated retinitis pigmentosa

    Lukovic, D., Castro, A. A., Delgado, A. B. G., Bernal, M. D. L. A. M., Pelaez, N. L., Lloret, A. D., Espejo, R. P., Kamenarova, K., Sánchez, L. F., Cuenca, N., Cortón, M., Fernandez, A. A., Sorkio, A., Skottman, H., Ayuso, C., Erceg, S. & Bhattacharya, S. S., 11 Aug 2015, In : Scientific Reports. 5, 12910.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Infiltrated bunch of solitons in Bi-doped frequency-shifted feedback fibre laser operated at 1450 nm

    Rissanen, J., Korobko, D. A., Zolotovsky, I. O., Melkumov, M., Khopin, V. F. & Gumenyuk, R., 10 Mar 2017, In : Scientific Reports. 7, 44194.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Information transfer in QT-RR dynamics: Application to QT-correction

    Potapov, I., Latukka, J., Kim, J., Luukko, P., Aalto-Setälä, K. & Räsänen, E., 1 Dec 2018, In : Scientific Reports. 8, 1, 9 p., 14992.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women

    Wiklund, P., Zhang, X., Pekkala, S., Autio, R., Kong, L., Yang, Y., Keinänen-Kiukaanniemi, S., Alen, M. & Cheng, S., 15 Apr 2016, In : Scientific Reports. 6, 24540.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Interleukin-6 and microRNA profiles induced by oral bacteria in human atheroma derived and healthy smooth muscle cells

    Pessi, T., Viiri, L. E., Raitoharju, E., Astola, N., Seppälä, I., Waldenberger, M., Lounatmaa, K., Davies, A. H., Lehtimäki, T., Karhunen, P. J. & Monaco, C., 1 Dec 2015, In : SpringerPlus. 4, 1

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    In vitro Evaluation of Porous borosilicate, borophosphate and phosphate Bioactive Glasses Scaffolds fabricated using Foaming Agent for Bone Regeneration

    Erasmus, E. P., Sule, R., Johnson, O. T., Massera, J. & Sigalas, I., 1 Dec 2018, In : Scientific Reports. 8, 1, 3699.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Lower bound for the spatial extent of localized modes in photonic-crystal waveguides with small random imperfections

    Faggiani, R., Baron, A., Zang, X., Lalouat, L., Schulz, S. A., O'Regan, B., Vynck, K., Cluzel, B., De Fornel, F., Krauss, T. F. & Lalanne, P., 1 Jun 2016, In : Scientific Reports. 6, 27037.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations

    Wilmes, S., Hafer, M., Vuorio, J., Tucker, J. A., Winkelmann, H., Löchte, S., Stanly, T. A., Pulgar Prieto, K. D., Poojari, C., Sharma, V., Richter, C. P., Kurre, R., Hubbard, S. R., Christopher Garcia, K., Moraga, I., Vattulainen, I., Hitchcock, I. S. & Piehler, J., 7 Feb 2020, In : Science. 367, 6478, p. 643-652 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Mechanistic principles underlying regulation of the actin cytoskeleton by phosphoinositides

    Senju, Y., Kalimeri, M., Koskela, E. V., Somerharju, P., Zhao, H., Vattulainen, I. & Lappalainen, P., 24 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. E8977-E8986

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors

    Guixà-González, R., Javanainen, M., Gómez-Soler, M., Cordobilla, B., Domingo, J. C., Sanz, F., Pastor, M., Ciruela, F., Martinez-Seara, H. & Selent, J., 22 Jan 2016, In : Scientific Reports. 6, 19839.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2

    Ruskamo, S., Nieminen, T., Kristiansen, C. K., Vatne, G. H., Baumann, A., Hallin, E. I., Raasakka, A., Joensuu, P., Bergmann, U., Vattulainen, I. & Kursula, P., 1 Dec 2017, In : Scientific Reports. 7, 1, 6510.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Multicomponent new particle formation from sulfuric acid, ammonia, and biogenic vapors

    Lehtipalo, K., Yan, C., Dada, L., Bianchi, F., Xiao, M., Wagner, R., Stolzenburg, D., Ahonen, L. R., Amorim, A., Baccarini, A., Bauer, P. S., Baumgartner, B., Bergen, A., Bernhammer, A. K., Breitenlechner, M., Brilke, S., Buchholz, A., Mazon, S. B., Chen, D., Chen, X., Dias, A., Dommen, J., Draper, D. C., Duplissy, J., Ehn, M., Finkenzeller, H., Fischer, L., Frege, C., Fuchs, C., Garmash, O., Gordon, H., Hakala, J., He, X., Heikkinen, L., Heinritzi, M., Helm, J. C., Hofbauer, V., Hoyle, C. R., Jokinen, T., Kangasluoma, J., Kerminen, V. M., Kim, C., Kirkby, J., Kontkanen, J., Kürten, A., Lawler, M. J., Mai, H., Mathot, S., Nieminen, T. & Virtanen, A., 12 Dec 2018, In : Science Advances. 4, 12, eaau5363.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Multilayer Aggregation with Statistical Validation: Application to Investor Networks

    Baltakys, K., Kanniainen, J. & Emmert-Streib, F., 1 Dec 2018, In : Scientific Reports. 8, 1, 8198.

    Research output: Contribution to journalArticleScientificpeer-review

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