Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Article › Scientific › Peer-reviewed
  2. Published

    Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Hermitian one-particle density matrix through a semiclassical gradient expansion

    Bencheikh, K. & Räsänen, E., 9 Dec 2015, In : Journal of Physics A: Mathematical and Theoretical. 49, 1, 015205.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method

    Hegele, L. A., Scagliarini, A., Sbragaglia, M., Mattila, K. K., Philippi, P. C., Puleri, D. F., Gounley, J. & Randles, A., 4 Oct 2018, In : Physical Review E. 98, 4, 13 p., 043302.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Information retrieval perspective to meta-visualization

    Peltonen, J. & Lin, Z., 2013, In : Journal of Machine Learning Research. 29, p. 165-180 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Introducing libeemd: a program package for performing the ensemble empirical mode decomposition

    Luukko, P. J. J., Helske, J. & Räsänen, E., 1 Jun 2016, In : Computational Statistics. 31, 2, p. 545-557 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Investigation of an entropic stabilizer for the lattice-Boltzmann method

    Mattila, K. K., Hegele, L. A. & Philippi, P. C., 19 Jun 2015, In : Physical Review E. 91, 6, 063010.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Majorization-minimization for manifold embedding

    Yang, Z., Peltonen, J. & Kaski, S., 2015, In : Journal of Machine Learning Research. 38, p. 1088-1097 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    NetBioV: An R package for visualizing large network data in biology and medicine

    Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2 Apr 2014, In : Bioinformatics. 30, 19, p. 2834-2836 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects

    Alberucci, A., Laudyn, U. A., Piccardi, A., Kwasny, M., Klus, B., Karpierz, M. A. & Assanto, G., 11 Jul 2017, In : Physical Review E. 96, 1, 012703.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Optimization and universality of Brownian search in a basic model of quenched heterogeneous media

    Godec, A. & Metzler, R., 21 May 2015, In : Physical Review E. 91, 5, 052134.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach

    Devassy, L., Jisha, C. P., Alberucci, A. & Kuriakose, V. C., 19 Aug 2015, In : Physical Review E. 92, 2, 12 p., 022914.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Quantifying the non-ergodicity of scaled Brownian motion

    Safdari, H., Cherstvy, A. G., Chechkin, A. V., Thiel, F., Sokolov, I. M. & Metzler, R., 18 Sep 2015, In : Journal of Physics A: Mathematical and Theoretical. 48, 37, 375002.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Reorientational versus Kerr dark and gray solitary waves using modulation theory

    Assanto, G., Marchant, T. R., Minzoni, A. A. & Smyth, N. F., 9 Dec 2011, In : Physical Review E. 84, 6, 066602.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Revealing differences in gene network inference algorithms on the network level by ensemble methods

    Altay, G. & Emmert-Streib, F., 25 May 2010, In : Bioinformatics. 26, 14, p. 1738-1744 7 p., btq259.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

    Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., Dehmer, M. & Emmert-Streib, F., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3345-3347 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    SCIP: a single-cell image processor toolbox

    Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration

    Palyulin, V. V., Chechkin, A. V., Klages, R. & Metzler, R., 8 Sep 2016, In : Journal of Physics A: Mathematical and Theoretical. 49, 39, 394002.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Signal focusing through active transport

    Godec, A. & Metzler, R., 2 Jul 2015, In : Physical Review E. 92, 1, 6 p., 010701.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Structured orthogonal families of one and two strata prime basis factorial models

    Rodrigues, P. C., Moreira, E. E., Jesus, V. M. & Mexia, J. T., 2014, In : Statistical Papers. 55, 3, p. 603-614 12 p.

    Research output: Contribution to journalArticleScientificpeer-review