Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Article › Scientific › Peer-reviewed
  2. Published

    Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

    Urmersbach, S., Aho, T., Alter, T., Hassan, S. S., Autio, R. & Huehn, S., 23 Oct 2015, In : BMC Microbiology. 15, 1, 229.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Characterization of aberrant pathways across human cancers

    Ylipää, A., Yli-Harja, O., Zhang, W. & Nykter, M., 2013, In : BMC Systems Biology. 7, Supplement 1, p. 1-12 12 p., S1.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Characterizing rate limiting steps in transcription from RNA production times in live cells

    Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Chemical castration and anti-androgens induce differential gene expression in prostate cancer

    Lehmusvaara, S., Erkkilä, T., Urbanucci, A., Waltering, K., Seppälä, J., Larjo, A., Tuominen, V., Isola, J., Kujala, P., Lähdesmäki, H., Kaipia, A., Tammela, T. & Visakorpi, T., 2012, In : Journal of Pathology. 227, 3, p. 336-345

    Research output: Contribution to journalArticleScientificpeer-review

  6. Chemical genetic identification of the IGF-linked pathway that is mediated by STAT6 and MFP2

    Choi, Y., Shimogawa, H., Murakami, K., Ramdas, L., Zhang, W., Qin, L. & Uesugi, M., 2006, In : Chemistry and Biology. 13, 3, p. 241-249

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    CIP2A is a candidate therapeutic target in clinically challenging prostate cancer cell populations

    Khanna, A., Rane, J. K., Kivinummi, K. K., Urbanucci, A., Helenius, M. A., Tolonen, T. T., Saramäki, O. R., Latonen, L., Manni, V., Pimanda, J. E., Maitland, N. J., Westermarck, J. & Visakorpi, T., 2015, In : Oncotarget. 6, 23, p. 19661-19670 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Circulating Plasma MiR-141 Is a Novel Biomarker for Metastatic Colon Cancer and Predicts Poor Prognosis

    Cheng, H., Zhang, L., Cogdell, D. E., Zheng, H., Schetter, A. J., Nykter, M., Harris, C. C., Chen, K., Hamilton, S. R. & Zhang, W., 2011, In : PLoS ONE. 6, 3, p. 1-8 8 p., e17745.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Classification and Retrieval on Macroinvertebrate Image Databases

    Kiranyaz, S., Ince, T., Pulkkinen, J., Gabbouj, M., Ärje, J., Kärkkäinen, S., Tirronen, V., Juhola, M., Turpeinen, T. & Meissner, K., 2011, In : Computers in Biology and Medicine. 41, 7, p. 463-472

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Classification of aircraft using micro-Doppler bicoherence-based features

    Molchanov, P., Egiazarian, K., Astola, J., Totsky, A., Leshchenko, S. & Jarabo-Amores, M. P., 2014, In : IEEE Transactions on Aerospace and Electronic Systems. 50, 2, p. 1455-1467 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Classification of dual- and single polarized SAR images by incorporating visual features

    Uhlmann, S. & Kiranyaz, S., 2014, In : ISPRS Journal of Photogrammetry and Remote Sensing. 90, p. 10-22 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Classification of ground moving targets using bicepstrum-based features extracted from Micro-Doppler radar signatures

    Molchanov, P. O., Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2013, In : Eurasip Journal on Advances in Signal Processing. 1, p. 1-13 13 p., 61.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Classification of moving ground radar objects by using bispectrumbased features

    Molchanov, P. O., Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2015, In : Telecommunications and Radio Engineering. 74, 6, p. 527-545 19 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Classification of the atmospheric formations by using bicoherence-based features extracted from weather radar backscattering signals

    Naumenko, V. V., Totsky, A. V., Khlopov, G. I., Voitovich, O. A. & Astola, J. T., 2016, In : Telecommunications and Radio Engineering. 75, 5, p. 463-475 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Classifying soil stoniness based on the excavator boom vibration data in mounding operations

    Melander, L., Ritala, R. & Strandström, M., 2019, In : Silva Fennica. 53, 2, 10068.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Class-Specific Kernel Discriminant Analysis Revisited: Further Analysis and Extensions

    Iosifidis, A. & Gabbouj, M., 1 Dec 2017, In : IEEE Transactions on Cybernetics. 47, 12, p. 4485-4496

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Client-Driven Joint Cache Management and Rate Adaptation for Dynamic Adaptive Streaming over HTTP

    Liu, C., Hannuksela, M. M. & Gabbouj, M., 2013, In : International Journal of Digital Multimedia Broadcasting. 16 p., 471683.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Clinical, histopathologic, molecular, and therapeutic findings in a large kindred with gastrointestinal stromal tumor

    Kleinbaum, E. P., Lazar, A. J. F., Tamborini, E., Chen, L. L., Strong, L., Choi, H., Benjamin, R. S., Zhang, W. & Trent, J. C., 2008, In : International Journal of Cancer. 122, 3, p. 711-718

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Cloudberry: An HTML5 Cloud Phone Platform for Mobile Devices

    Taivalsaari, A. & Systä, K., 2012, In : IEEE Software. 12, 4, p. 40-45

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Cloud computing as a facilitator for web service composition in factory automation

    Puttonen, J., Lobov, A., Cavia Soto, M. A. & Martinez Lastra, J. L., 20 Feb 2019, In : Journal of Intelligent Manufacturing. 30, 2, p. 687-700 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Clusters of investors around initial public offering

    Baltakienė, M., Baltakys, K., Kanniainen, J., Pedreschi, D. & Lillo, F., 1 Dec 2019, In : Palgrave Communications. 5, 1, 14 p., 129.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    CNN-based edge filtering for object proposals

    Waris, M. A., Iosifidis, A. & Gabbouj, M., 2 Jun 2017, In : Neurocomputing. 266, p. 631-640

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Code Clones: Good, bad, or Ugly?

    Harsu, M., Bakota, T., Siket, I., Koskimies, K. & Systä, T., 2012, In : Nordic Journal of Computing. 15, p. 3-17

    Research output: Contribution to journalArticleScientificpeer-review

  24. E-pub ahead of print

    Coding of Light Fields Using Disparity Based Sparse Prediction

    Astola, P. & Tabus, I., 6 Dec 2019, In : IEEE Access.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Cognitive load and metacognitive confidence extraction from pupillary response

    Gavas, R. D., Tripathy, S. R., Chatterjee, D. & Sinha, A., 1 Dec 2018, In : Cognitive Systems Research. 52, p. 325-334 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Collective Network of Binary Classifier Framework for Polarimetric SAR Image Classification: An Evolutionary Approach

    Kiranyaz, S., Ince, T., Uhlmann, S. & Gabbouj, M., 2012, In : IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics. 42, 4, p. 1169-1186

    Research output: Contribution to journalArticleScientificpeer-review

  27. Combination of 5-fluorouracil and N1-acetyltransferase expression, depletes polyamines, and synergistically induces apoptosis in colon carcinoma cells

    Choi, W., Gerner, E., Ramadas, L., Dupart, J., Carew, J., Huang, P., Zhang, W. & Hamilton, S. R., 2005, In : Journal of Biological Chemistry. 280, 5, p. 3295-3304

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Combining dual-tree complex wavelets and multiresolution in iterative CT reconstruction with application to metal artifact reduction

    Us, D., Ruotsalainen, U. & Pursiainen, S., 5 Dec 2019, In : BioMedical Engineering Online. 18, 1, 116.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Compact North Finding System

    Collin, J., Takala, J., Bojja, J., Kirkko-Jaakkola, M., Payne, M. & Griffiths, R., 15 Apr 2016, In : IEEE Sensors Journal. 16, 8, p. 2554-2563 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Comparative analysis of tissue reconstruction algorithms for 3D histology

    Kartasalo, K., Latonen, L., Vihinen, J., Visakorpi, T., Nykter, M. & Ruusuvuori, P., 1 Sep 2018, In : Bioinformatics. 34, 17, p. 3013-3021 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Comparative study on use of mobile videos in elementary and middle school

    Tuomi, P. & Multisilta, J., 2012, In : International Journal of Computer Information Systems and Industrial Management Applications. 4, p. 255-266

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders

    Smolander, J., Dehmer, M. & Emmert-Streib, F., 1 Jul 2019, In : FEBS Open Bio. 9, 7, p. 1232-1248 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Comparison and optimization of transient transfection methods at human astrocytoma cell line 1321N1

    Marucci, G., Lammi, C., Buccioni, M., Dal Ben, D., Lambertucci, C., Amantini, C., Santoni, G., Kandhavelu, M., Abbracchio, M. P., Lecca, D., Volpini, R. & Cristalli, G., 2011, In : ANALYTICAL BIOCHEMISTRY. 414, 2, p. 300-302

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia

    Tohka, J., Moradi, E., Huttunen, H., Alzheimer’s Disease Neuroimaging Initiative & Alzheimer’s Disease Neuroimaging Initiative 2, 2016, In : Neuroinformatics. 14, 3, p. 279-296 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations

    Hituri, K. & Linne, M-L., 2013, In : PLoS ONE. 8, 4, p. 1-13 13 p., e59618.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Comparison of module detection algorithms in protein networks and investigation of the biological meaning of predicted modules

    Tripathi, S., Moutari, S., Dehmer, M. & Emmert-Streib, F., 2016, In : BMC Bioinformatics. 17, 1, 129.

    Research output: Contribution to journalArticleScientificpeer-review

  38. E-pub ahead of print

    Compatible natural gradient policy search

    Pajarinen, J., Thai, H. L., Akrour, R., Peters, J. & Neumann, G., 2019, In : Machine Learning.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Compensation of Missing Wedge Effects with Sequential Statistical Reconstruction in Electron Tomography

    Paavolainen, L., Acar, E., Tuna, U., Peltonen, S., Moriya, T., Soonsawad, P., Marjomaki, V., Cheng, R. H. & Ruotsalainen, U., 3 Oct 2014, In : PLoS ONE. 9, 10, 14 p., 108978.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Competitive Quantization for Approximate Nearest Neighbor Search

    Ozan, E. C., Kiranyaz, S. & Gabbouj, M., 2016, In : IEEE Transactions on Knowledge and Data Engineering. 28, 11, p. 2884-2894

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Complex-domain Joint Broadband Hyperspectral Image Denoising

    Katkovnik, V., Shevkunov, I., Claus, D., Pedrini, G. & Egiazarian, K., 1 May 2019, In : Sensors and Transducers. 233, 5, p. 33-39 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Complex ISNMF: a phase-aware model for monaural audio source separation

    Magron, P. & Virtanen, T., 10 Oct 2018, In : IEEE/ACM Transactions on Audio Speech and Language Processing. 27, 1, p. 20-31 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Complexity analysis of adaptive binary arithmetic coding software implementations

    Belyaev, E., Veselov, A., Turlikov, A. & Liu, K., 2011, In : Lecture Notes in Computer Science. 6869, p. 598-607

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Compositional Models for Audio Processing: Uncovering the structure of sound mixtures

    Virtanen, T., Gemmeke, J. F., Raj, B. & Smaragdis, P., 2015, In : IEEE Signal Processing Magazine. 32, 2, p. 125 - 144 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Comprehensive molecular portraits of human breast tumours

    Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., Fulton, L. L., Dooling, D. J., Ding, L., Mardis, E. R., Wilson, R. K., Ally, A., Balasundaram, M., Butterfield, Y. S. N., Carlsen, R., Carter, C., Chu, A., Chuah, E., Chun, H-J. E. & Erkkilä, T., 2012, In : Nature. 490, 7418, p. 61-70

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Compressive sensing computational ghost imaging

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 8, p. 1556-1567

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Compressive Sensing Image Restoration Using Adaptive Curvelet Thresholding and Nonlocal Sparse Regularization

    Eslahi, N. & Aghagolzadeh, A., 1 Jul 2016, In : IEEE Transactions on Image Processing. 25, 7, p. 3126-3140 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, In : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Computational study of noise in a large signal transduction network

    Intosalmi, J., Manninen, T., Ruohonen, K. & Linne, M-L., 2011, In : BMC Bioinformatics. 12, p. 1-8 8 p., 252.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Computational super-resolution phase retrieval from multiple phase-coded diffraction patterns: Simulation study and experiments

    Katkovnik, V., Shevkunov, I., Petrov, N. V. & Egiazarian, K., 20 Jul 2017, In : Optica. 4, 7, p. 786-794 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Conceptual change takes time: game based learning cannot be only supplementary amusement

    Ketamo, H. & Kiili, K., 2011, In : Journal of Educational Multimedia and Hypermedia. 19, 4, p. 399-419

    Research output: Contribution to journalArticleScientificpeer-review

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