Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. Article › Scientific › Peer-reviewed
  2. A comparative analysis of multidimensional features of objects resembling sets of graphs

    Dehmer, M., Emmert-Streib, F. & Gesell, T., 15 Feb 2008, In : Applied Mathematics and Computation. 196, 1, p. 221-235 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers

    Wang, J. & Ray, A. K., 2014, In : Journal of Computational and Theoretical Nanoscience. 11, 7, p. 1710-1717 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Algorithmic computation of knot polynomials of secondary structure elements of proteins

    Emmert-Streib, F., 1 Oct 2006, In : Journal of Computational Biology. 13, 8, p. 1503-1512 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    A microscopic view of the mechanisms of active transport across the cellular membrane

    Enkavi, G., Li, J., Wen, P., Thangapandian, S., Moradi, M., Jiang, T., Han, W. & Tajkhorshid, E., 2014, In : Annual Reports in Computational Chemistry. 10, p. 77-125 49 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    An automated algorithm for reliable equation of state fitting of magnetic systems

    Levämäki, H., Tian, L-Y., Vitos, L. & Ropo, M., 2019, In : Computational Materials Science. 156, p. 121-128 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    An efficient heuristic approach to detecting graph isomorphism based on combinations of highly discriminating invariants

    Dehmer, M., Grabner, M., Mowshowitz, A. & Emmert-Streib, F., Aug 2013, In : Advances in Computational Mathematics. 39, 2, p. 311-325 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    A novel epidemic model considering demographics and intercity commuting on complex dynamical networks

    Yin, Q., Wang, Z., Xia, C., Dehmer, M., Emmert-Streib, F. & Jin, Z., 2020, In : Applied Mathematics and Computation. 386, 21 p., 125517.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    A robust AMMI model for the analysis of genotype-by-environment data

    Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. A similarity measure for graphs with low computational complexity

    Dehmer, M., Emmert-Streib, F. & Kilian, J., 1 Nov 2006, In : Applied Mathematics and Computation. 182, 1, p. 447-459 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data

    Yu, G., Zhang, B., Bova, G. S., Xu, J., Shih, I. M. & Wang, Y., Jun 2011, In : Bioinformatics. 27, 11, p. 1473-1480 8 p., btr183.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Characterizing rate limiting steps in transcription from RNA production times in live cells

    Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Comparative analysis of tissue reconstruction algorithms for 3D histology

    Kartasalo, K., Latonen, L., Vihinen, J., Visakorpi, T., Nykter, M. & Ruusuvuori, P., 1 Sep 2018, In : Bioinformatics. 34, 17, p. 3013-3021 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Comparing large graphs efficiently by margins of feature vectors

    Dehmer, M. & Emmert-Streib, F., 15 May 2007, In : Applied Mathematics and Computation. 188, 2, p. 1699-1710 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Accepted/In press

    Cuts for 3-D magnetic scalar potentials: Visualizing unintuitive surfaces arising from trivial knots

    Stockrahm, A., Lahtinen, V., Kangas, J. J. J. & Kotiuga, P. R., 2019, (Accepted/In press) In : Computers and Mathematics with Applications.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Density functional theory study of FePdn (n = 2-14) clusters and interactions with small molecules

    Ma, L., Wang, J., Hao, Y. & Wang, G., Feb 2013, In : Computational Materials Science. 68, p. 166-173 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Entropy bounds for dendrimers

    Chen, Z., Dehmer, M., Emmert-Streib, F. & Shi, Y., 1 Sep 2014, In : Applied Mathematics and Computation. 242, p. 462-472 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data

    Häkkinen, A. & Ribeiro, A. S., 1 Jan 2015, In : Bioinformatics. 31, 1, p. 69-75 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Evolutionary dynamics of the spatial Prisoner's Dilemma with self-inhibition

    Emmert-Streib, F., 5 Feb 2012, In : Applied Mathematics and Computation. 218, 11, p. 6482-6488 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

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