Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Connecting the real world with the digital overlay with smart ambient media-applying Peirce's categories in the context of ambient media

    Lugmayr, A., 2012, In : Multimedia Tools and Applications. 58, 2, p. 385-398

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Variable Selection by sNML Criterion in Logistic Regression with an Application to a Risk-Adjustment Model for Hip Fracture Mortality

    Liski, A., Tabus, I., Sund, R. & Häkkinen, U., 2012, In : Journal of Data Science. 10, 2, p. 321-343

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation

    Gold, E. S., Ramsey, S. A., Sartain, M. J., Selinummi, J., Podolsky, I., Rodriguez, D. J., Moritz, R. L. & Aderem, A., 2012, In : Journal of Experimental Medicine. 209, 4, p. 807-817

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Geocachers: The creative tourism experience

    Ihamäki, P., 2012, In : Journal of Hospitality and Tourism Technology. 3, 3, p. 152-175

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Inverse polynomial reconstruction method in DCT domain

    Dadkhahi, H., Gotchev, A. & Egiazarian, K., 2012, In : Eurasip Journal on Advances in Signal Processing. 133

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Sensor module for hydraulic boom state feedback control

    Honkakorpi, J., Vihonen, J. & Mattila, J., 2012, In : International Journal of Fluid Power. 13, 3, p. 15-23

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Ambient Media Culture: What needs to be Discussed When Defining Ambient Media from a Media Cultural Viewpoint?

    Lugmayr, A., 2012, In : International Journal of Ambient Computing and Intelligence. 4, 4, p. 58-64 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Multiview depth coding based on combined color/depth segmentation

    Ruiz-Hidalgo, J., Morros, J. R., Aflaki, P., Calderero, F. & Marques, F., 2012, In : Journal of Visual Communication and Image Representation. 23, 1, p. 42-52

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Domain specific service oriented reference architecture, case: distributed disasters and emergency knowledge management

    Leppäniemi, J., 2012, In : International Journal of Computer Information Systems and Industrial Management Applications. 4, p. 43-54

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Identification of early gene expression changes during human Th17 cell differentiation

    Tuomela, S., Salo, V., Tripathi, S. K., Chen, Z., Laurila, K., Gupta, B., Äijö, T., Oikari, L., Stockinger, B., Lähdesmäki, H. & Lahesmaa, R., 2012, In : Blood. 119, 23, p. E151-E160

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Multimodal Semantics Extraction from User-Generated Videos

    Cricri, F., Dabov, K., Roininen, M., Mate, S., Curcio, I. & Gabbouj, M., 2012, In : Advances in Multimedia. 2012, p. 1-17 17 p., 292064.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Methods for depth-map filtering in view-plus-depth 3D video representation

    Smirnov, S., Gotchev, A. & Egiazarian, K., 2012, In : Eurasip Journal on Advances in Signal Processing. 25, p. 1-21 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Greedy Sparse RLS

    Dumitrescu, B., Onose, A., Helin, P. & Tabus, I., 2012, In : IEEE Transactions on Signal Processing. 60, 5, p. 2194-2207

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    SGNS2 : a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations

    Lloyd-Price, J., Gupta, A. & Ribeiro, A. S., 2012, In : Bioinformatics. 28, 22, p. 3004-3005

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Asymmetric Disposal of Individual Protein Aggregates in Escherichia coli, One Aggregate at a Time

    Lloyd-Price, J., Häkkinen, A., Kandhavelu, M., Marques, I. J., Chowdhury, S., Lihavainen, E., Yli-Harja, O. & Ribeiro, A. S., 2012, In : Journal of Bacteriology. 197, 7, p. 1747-1752

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    The design principles for flow experience in educational games

    Kiili, K., Freitas, S. D., Arnab, S. & Lainema, T., 2012, In : Procedia Computer Science. 15, p. 78-91

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Design of multiple-valued logic networks with regular structure by using spectral representations

    Stankovic, R., Astola, J. & Moraga, C., 2012, In : Journal of Multiple-Valued Logic and Soft Computing. 19, 1-3, p. 251-269

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Implementing Mobile Mashware Architecture: Downloadable Components as On-Demand Services

    Mikkonen, T. & Salminen, A., 2012, In : Procedia Computer Science. 10, p. 553-560

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Business Model of Long-term Browser-based Games - Income without Game Packages

    Vanhatupa, J-M., 2012, In : International Journal of Computer Information Systems and Industrial Management Applications. 5, p. 195-202

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Single-molecule dynamics of transcription of the lar promoter

    Kandhavelu, M., Häkkinen, A., Yli-Harja, O. & Ribeiro, A., 2012, In : Physical Biology. 9, 2, p. 1-7 7 p., 026004.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Evolutionary RBF classifier for polarimetric SAR images

    Ince, T., Kiranyaz, S. & Gabbouj, M., 2012, In : Expert Systems with Applications. 39, 5, p. 4710-4717

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    High-accuracy wave field reconstruction: Decoupled inverse imaging with sparse modeling of phase and amplitude

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 1, p. 44-54

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Scenario-driven approach for business process development

    Ruokonen, A., Kokko, T. & Systä, T., 2012, In : International Journal of Business Process Integration and Management. 6, 1, p. 77-96

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Chemical castration and anti-androgens induce differential gene expression in prostate cancer

    Lehmusvaara, S., Erkkilä, T., Urbanucci, A., Waltering, K., Seppälä, J., Larjo, A., Tuominen, V., Isola, J., Kujala, P., Lähdesmäki, H., Kaipia, A., Tammela, T. & Visakorpi, T., 2012, In : Journal of Pathology. 227, 3, p. 336-345

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Audio-video synchronous coding based on motion estimation in H.264

    Li, X., Chen, H., Chen, M. & Gabbouj, M., 2012, In : Jilin Daxue Xuebao. 42, 5, p. 1321-1326

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Obstacles and opportunities in deploying model-based GUI testing of mobile software: A survey

    Janicki, M., Katara, M. & Pääkkönen, T., 2012, In : Software Testing Verification and Reliability. 22, 5, p. 313-341

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Comprehensive molecular portraits of human breast tumours

    Koboldt, D. C., Fulton, R. S., McLellan, M. D., Schmidt, H., Kalicki-Veizer, J., McMichael, J. F., Fulton, L. L., Dooling, D. J., Ding, L., Mardis, E. R., Wilson, R. K., Ally, A., Balasundaram, M., Butterfield, Y. S. N., Carlsen, R., Carter, C., Chu, A., Chuah, E., Chun, H-J. E. & Erkkilä, T., 2012, In : Nature. 490, 7418, p. 61-70

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Multi-Target Regression with Rule Ensembles

    Aho, T., Zenko, B., Dzeroski, S. & Elomaa, T., 2012, In : Journal of Machine Learning Research. 13, p. 2367-2407

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis

    Pajula, J., Kauppi, J-P. & Tohka, J., 2012, In : PLoS ONE. 7, 8, p. 1-22 22 p., e41196.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    BM3D Frames and Variational Image Deblurring

    Danielyan, A., Katkovnik, V. & Egiazarian, K., 2012, In : IEEE Transactions on Image Processing. 21, 4, p. 1715-1728

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Toward a cloud-based mobile device: Scriptable web applications as first-class citizens

    Mikkonen, T., Terho, M., Kuusipalo, M., Reijula, P. & Salminen, A., 2012, In : Service Oriented Computing and Applications. 6, 4, p. 341-349

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Multichannel Audio Upmixing by Time-Frequency Filtering Using Non-Negative Tensor Factorization

    Nikunen, J., Virtanen, T. & Vilermo, M., 2012, In : Journal of the Audio Engineering Society. 60, 10, p. 794-806

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation

    Närvä, E., Rahkonen, N., Reddy Emani, M., Lund, R., Pursiheimo, J-P., Nästi, J., Autio, R., Rasool, O., Denessiouk, K., Lähdesmäki, H., Rao, A. & Lahesmaa, R., 2012, In : Stem Cells. 30, 3, p. 452-460

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    A path towards networked organisations - the push of digital natives or the pull of the needs?

    Jaakkola, H., Linna, P., Henno, J., Mäkelä, J. & Welzer-Druzovec, T., 2012, In : International Journal of Knowledge Engineering and Soft Data Paradigms. 3, 3/4, p. 240-260

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Using Mobile Technology to Bring Families Together: The Design of a Family History Concept to Motivate Face-to-Face Communication

    Jarusriboonchai, P. & Väänänen-Vainio-Mattila, K., 2012, In : International Journal of Mobile Human Computer Interaction. 4, 2, p. 1-17 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Compressive sensing computational ghost imaging

    Katkovnik, V. & Astola, J., 2012, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 29, 8, p. 1556-1567

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Hot Issues in game enhanced learning: the GEL viewpoint

    Freitas, S. D., Earp, J., Ott, M., Kiili, K., Ney, M., Popescu, M., Romero, M., Usart, M. & Stanescu, I., 2012, In : Procedia Computer Science. 15, p. 25-31

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Insulin-like growth factor-binding protein 2-driven glioma progression is prevented by blocking a clinically significant integrin, integrin-linked kinase, and NF-kB network

    Holmes, K., Annala, M., Chua, C., Dunlap, S., Liu, Y., Hugen, N., Moore, L., Cogdell, D., Hu, L., Nykter, M., Hess, K., Fuller, G. & Zhang, W., 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 9, p. 3475-3480

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Power Consumption Analysis of Constant Bit Rate Video Transmission Over 3G Networks

    Ukhanova, A., Belyaev, E., Wang, L. & Forchhammer, S., 2012, In : Computer Communications. 35, 14, p. 1695-1706

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    ERP-based simulation as a learning environment for SME business

    Nisula, K. & Pekkola, S., 2012, In : The International Journal of Management Education. 10, p. 39-49

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Customer perceived value in the software business

    Helander, N. & Ulkuniemi, P., 2012, In : Journal of High Technology Management Research. 23, 1, p. 26-35

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Understanding the most satisfying and unsatisfying user experiences: Emotions, psychological needs, and context

    Partala, T. & Kallinen, A., 2012, In : Interacting with Computers. 24, 1, p. 25-34

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Regulation of Mean and Noise of the in Vivo Kinetics of Transcription Under the Control of the lac/ara-1 Promoter

    Kandhavelu, M., Lloyd-Price, J., Gupta, A., Muthukrishnan, A-B., Yli-Harja, O. & Ribeiro, A. S., 2012, In : FEBS Letters. 586, 21, p. 3870-3875

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Stereoscopic Depth Cues Outperform Monocular Ones on Autostereoscopic Display

    Mikkola, M., Jumisko-Pyykkö, S., Strohmeier, D., Boev, A. & Gotchev, A., 2012, In : IEEE Journal of Selected Topics in Signal Processing. 6, 6, p. 698-709

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Unsupervised object discovery via self-organisation

    Kinnunen, T., Kämäräinen, J-K., Lensu, L. & Kälviäinen, H., 2012, In : Pattern Recognition Letters. 33, p. 2102-2112

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    MoJo in action: The use of mobiles in conflict, community, and cross-platform journalism

    Mills, J., Egglestone, P., Rashid, O. & Väätäjä, H., 2012, In : Continuum: Journal of Media and Cultural Studies. 26, 5, p. 669-683

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Genetic variation may play crucial role in non-coding RNA Biogenesis

    Kandhavelu, J. & Kandhavelu, M., 2012, In : American Journal of Molecular Biology. 2012, 2, p. 386-389 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Androgen receptor (AR) aberrations in castration-resistant prostate cancer

    Waltering, K., Urbanucci, A. & Visakorpi, T., 2012, In : Molecular and Cellular Endocrinology. 360, 1-2, p. 38-43

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer

    Kuuselo, R., Savinainen, K., Sandström, S., Autio, R. & Kallioniemi, A., 2011, In : International Journal of Cancer. 129, 11, p. 2553-2565

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

    Annala, M., Laurila, K., Lähdesmäki, H. & Nykter, M., 2011, In : PLoS ONE. 6, 5, p. 1-13 13 p., e20059.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Stochastic approximation driven particle swarm optimization with simultaneous perturbation - Who will guide the guide?

    Kiranyaz, S., Ince, T. & Gabbouj, M., 2011, In : Applied Soft Computing. 11, 2, p. 2334-2347

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Personalized long-term ECG classification: A systematic approach

    Kiranyaz, S., Ince, T., Pulkkinen, J. & Gabbouj, M., 2011, In : Expert Systems with Applications. 38, 4, p. 3220-3226

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Retrospective vs. prospective: two approaches to mobile media capture and access

    Perttula, A., Carter, S. & Denoue, L., 2011, In : International Journal of Arts and Technology. 4, 3, p. 249-259

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Musical Instrument Sound Multi-Excitation Model for Non-negative Spectrogram Factorization

    Carabias-Orti, J. J., Virtanen, T., Vera-Candeas, P., Ruiz-Reyes, N. & Canadas-Quesada, F. J., 2011, In : IEEE Journal of Selected Topics in Signal Processing. 5, 6, p. 1144-1158

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Wave Field Reconstruction From Multiple Plane Intensity-Only Data: Augmented Lagrangian Algorithm

    Migukin, A., Katkovnik, V. & Astola, J., 2011, In : Journal of the Optical Society of America A: Optics Image Science and Vision. 28, 6, p. 993-1001

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Point Pattern Matching for 2-D Point Sets with Regular Structure

    Manninen, T., Rönkkä, R. & Huttunen, H., 2011, In : Lecture Notes in Computer Science. 6688, p. 156-165

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models

    Manninen, T., Hituri, K., Toivari, E. & Linne, M-L., 2011, In : Eurasip Journal on Bioinformatics and Systems Biology. 2011, p. 1-11 11 p., 797250.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Towards a Reference Architecture for Mashups

    Mikkonen, T. & Salminen, A., 2011, In : Lecture Notes in Computer Science. 7046, p. 647-656

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    CORDIC instructions for LDPC decoding on SDR platforms

    Senthilvelan, M., Yu, M., Iancu, D., Sima, M. & Schulte, M., 2011, In : Analog Integrated Circuits and Signal Processing. 69, 2-3, p. 191-206

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    Effects of Transmitters and Amyloid-Beta Peptide on Calcium Signals in Rat Cortical Astrocytes: Fura-2AM Measurements and Stochastic Model Simulations

    Toivari, E., Manninen, T., Nahata, A. K., Jalonen, T. O. & Linne, M-L., 2011, In : PLoS ONE. 6, 3, p. 1-9 9 p., e17914.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Simple bisimilarity minimization in O(m log n) time

    Valmari, A., 2011, In : Fundamenta Informaticae. 105, 3, p. 319-339

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Complexity analysis of adaptive binary arithmetic coding software implementations

    Belyaev, E., Veselov, A., Turlikov, A. & Liu, K., 2011, In : Lecture Notes in Computer Science. 6869, p. 598-607

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Measuring Mobile Internet Communication End User Cost and System Latency as Data Limitations

    Tiainen, M., Käpylä, J. & Lönnqvist, A., 2011, In : International Journal of Engineering and Industries. 2, 4, p. 28-37

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Teleconsultation: Changes in technology and costs over a 12-year period

    Lamminen, J., Forsvik, H. J., Voipio, V. & Ruohonen, K., 2011, In : Journal of Telemedicine and Telecare. 17, 8, p. 412-416

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Multi-dimensional particle swarm optimization in dynamic environments

    Kiranyaz, S., Pulkkinen, J. & Gabbouj, M., 2011, In : Expert Systems with Applications. 38, 3, p. 2212-2223

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Experience explorer: Context-based browsing of personal media

    Vaittinen, T., Kärkkäinen, T. & Roimela, K., 2011, In : Lecture Notes in Computer Science. 6772, p. 111-120 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors

    Ylipää, A., Hunt, K. K., Yang, J., Lazar, A. J. F., Torres, K. E., Lev, D. C., Nykter, M., Pollock, R. E., Trent, J. & Zhang, W., 2011, In : Cancer. 117, 2, p. 380-389

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    A virtual world prototype for interacting with a music collection A virtual world prototype for interacting with a music collection

    Holm, J. & Lehtiniemi, A., 2011, In : Lecture Notes in Computer Science. 6778, p. 326-335

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Intangible benefits of mobile business services

    Vuolle, M., 2011, In : International Journal of Learning and Intellectual Capital. 8, 1, p. 50-62

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    Learning of paw preference in mice is strain dependent, gradual and based on short-term memory of previous reaches

    Ribeiro, A. S., Eales, B. A. & Biddle, F. G., 2011, In : ANIMAL BEHAVIOUR. 81, 1, p. 249-257

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Designing multimodal tracks for mobile users in unfamiliar urban environments

    Vainio, T., 2011, In : Digital Creativity. 22, 1, p. 26-39

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Required levels of catalysis for emergence of autocatalytic sets in models of chemical reaction systems

    Hordijk, W., Kauffman, S. A. & Steel, M., 2011, In : International Journal of Molecular Sciences. 12, 5, p. 3085-3101

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Palloharmoniset funktiot ja esilasketut siirtofunktiot valaistuslaskennassa

    Kellomäki, T., 2011, In : Tietojenkäsittelytiede. 32, p. 16-33

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    Dynamic Queries with Relevance Feedback for Content Based Image Retrieval

    Birinci, M., Guldogan, E. & Gabbouj, M., 2011, In : Lecture Notes in Computer Science. 6761, p. 547-554

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Prediction and Transmission Optimization of Video Guaranteeing a Bounded Zapping-Delay in DVB-H

    Vadakital, V. K. M. & Gabbouj, M., 2011, In : IEEE Transactions on Broadcasting. 57, 2, p. 231-245

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Uniform Motion Blur in Poissonian Noise: Blur/Noise Tradeoff

    Boracchi, G. & Foi, A., 2011, In : IEEE Transactions on Image Processing. 20, 2, p. 592-598

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    From local to global - path towards multicultural software engineering

    Jaakkola, H., Henno, J. & Linna, P., 2011, In : International Journal of Knowledge and Learning. 7, 1/2, p. 5-24

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter

    Smolander, O-P., Kandhavelu, M., Mannerström, H., Lihavainen, E., Kalaichelvan, S., Healy, S., Yli-Harja, O., Karp, M. & Ribeiro, A. S., 2011, In : BMC Molecular Biology. 12, p. 1-27 27 p., 21.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Stochastic sequence-level model of coupled transcription and translation in prokaryotes

    Mäkelä, J., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : BMC Bioinformatics. 12, p. 1-33 33 p., 121.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    Circulating Plasma MiR-141 Is a Novel Biomarker for Metastatic Colon Cancer and Predicts Poor Prognosis

    Cheng, H., Zhang, L., Cogdell, D. E., Zheng, H., Schetter, A. J., Nykter, M., Harris, C. C., Chen, K., Hamilton, S. R. & Zhang, W., 2011, In : PLoS ONE. 6, 3, p. 1-8 8 p., e17745.

    Research output: Contribution to journalArticleScientificpeer-review

  82. Published

    Copy number variation and selection during reprogramming to pluripotency

    Hussein, S. M., Batada, N. N., Vuoristo, S., Ching, R. W., Autio, R., Narva, E., Ng, S., Sourour, M., Hämäläinen, R., Olsson, C., Lundin, K., Mikkola, M., Trokovic, R., Peitz, M., Bruestle, O., Bazett-Jones, D. P., Alitalo, K., Lahesmaa, R., Nagy, A. & Otonkoski, T., 2011, In : Nature. 471, 7336, p. 58-62

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    MashReduce - Server-Side Mashups for Mobile Devices

    Salo, J., Aaltonen, T. & Mikkonen, T., 2011, In : Lecture Notes in Computer Science. 6646, p. 168-177

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    A Beta-mixture model for dimensionality reduction, sample classification and analysis

    Laurila, K., Osre, B., Andersen, C. L., Lamy, P., Orntoft, T., Yli-Harja, O. & Wiuf, C., 2011, In : BMC Bioinformatics. 12, p. 1-6 6 p., 215.

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Conceptual change takes time: game based learning cannot be only supplementary amusement

    Ketamo, H. & Kiili, K., 2011, In : Journal of Educational Multimedia and Hypermedia. 19, 4, p. 399-419

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Tool Assisted Analysis of Open Source Projects: A Multi-faceted Challenge

    Syeed, M. M. M., Aaltonen, T., Hammouda, I. & Systä, T., 2011, In : International Journal of Open Source Software and Processes. 3, 2, p. 43-78

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    In Vivo Kinetics of Transcription initiation of the Lar Promoter in Escherichia coli. Evidence for a Sequential Mechanism with Two Rate-Limiting Steps

    Kandhavelu, M., Mannerström, H., Gupta, A., Häkkinen, A., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : BMC Systems Biology. 5, p. 1-9 9 p., 149.

    Research output: Contribution to journalArticleScientificpeer-review

  88. Published

    Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering

    Santala, S., Efimova, E., Kivinen, V., Larjo, A., Aho, T., Karp, M. & Santala, V., 2011, In : Microbial Cell Factories. 10, 36, p. 1-10 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    Probing Stochastic Phenotype Switching as a Survival Strategy in Fluctuating Environments

    Ribeiro, A. S. & Häkkinen, A., 2011, In : International Journal of Computational Intelligence in Control. 3, 1, p. 9-15

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    Recursive FIR filter structures on FPGA

    Lehto, R., Tauren, T. & Vainio, O., 2011, In : Microprocessors and Microsystems. 35, 7, p. 595-602

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    On the origin of events: Branching cells as stubborn sets

    Hansen, H. & Wang, X., 2011, In : Lecture Notes in Computer Science. 6709, p. 248-267

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Three-Dimensional Media for Mobile Devices

    Gotchev, A., Akar, G. B., Capin, T., Strohmeier, D. & Boev, A., 2011, In : Proceedings of the IEEE. 99, 4, p. 708-741

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Cancer Systems Biology: Signal Processing for Cancer Research

    Yli-Harja, O., Ylipää, A., Nykter, M. & Zhang, W., 2011, In : Chinese Journal of Cancer. 30, 4, p. 221-225

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    An Efficient Algorithm for the optimization of FIR Filters Synthesized Using the Multistage Frequency-Response Masking Approach

    Yli-Kaakinen, J. & Saramäki, T., 2011, In : Circuits, Systems and Signal Processing. 30, 1, p. 157-183

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Implementation of Linear-Phase FIR Filters for a Rational Sampling-Rate Conversion Utilizing the Coefficient Symmetry

    Bregovic, R., Yu, Y. J., Saramäki, T. & Lim, Y. C., 2011, In : IEEE Transactions on Circuits and Systems. Part 1: Regular Papers. 58, 3, p. 548-561

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    A systems biological approach to identify key transcription factors and their genomic neighborhoods in human sarcomas

    Ylipää, A., Yli-Harja, O., Zhang, W. & Nykter, M., 2011, In : Chinese Journal of Cancer. 30, 1, p. 27-40

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    Computational study of noise in a large signal transduction network

    Intosalmi, J., Manninen, T., Ruohonen, K. & Linne, M-L., 2011, In : BMC Bioinformatics. 12, p. 1-8 8 p., 252.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Published

    Methodology for design of Antialiasing Filters for Autostereoscopic Displays

    Boev, A., Bregovic, R. & Gotchev, A., 2011, In : IET Signal Processing. 5, 3, p. 333-343

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    Additional requirements for process assessment in safety-critical software and systems domain

    Johansson, M. & Nevalainen, R., 2011, In : Journal of Software Maintenance and Evolution: Research and Practice. p. 1-10 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Self-Similarity Measure for Assessment of Image Visual Quality

    Ponomarenko, N., Jin, L., Lukin, V. & Egiazarian, K., 2011, In : Lecture Notes in Computer Science. 6915, p. 459-470

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models

    Härmä, V., Knuuttila, M., Virtanen, J., Mirtti, T., Kohonen, P., Kovanen, P., Happonen, A., Kaewphan, S., Ahonen, I., Kallioniemi, O., Grafström, R., Lötjönen, J. & Nees, M., 2011, In : Oncogene. 31, p. 2075-2089

    Research output: Contribution to journalArticleScientificpeer-review

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