Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Quantitative analysis of colony morphology in yeast

    Ruusuvuori, P., Lin, J., Scott, A., Tan, Z., Sorsa, S., Kallio, A., Nykter, M., Yli-Harja, O., Shmulevich, I. & Dudley, A., 2014, In : BioTechniques. 56, 1, p. 18-27 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    POMO - Plotting Omics analysis results for Multiple Organisms

    Lin, J., Kreisberg, R., Kallio, A., Dudley, A. M., Nykter, M., Shmulevich, I., May, P. & Autio, R., 2014, In : BMC Genomics. 14, p. 1-10 10 p., 918.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Estimation of fluorescence-tagged RNA numbers from spot intensities

    Häkkinen, A., Kandhavelu, M., Garasto, S. & Ribeiro, A. S., 2014, In : Bioinformatics. 30, 8, p. 1146-1153 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Nonlinear phenomena in Petrel sounds

    Tanttu, J. T., Turunen, J. & Kumpumäki, T., 2014, In : Bioacoustics: the International Journal of Animal Sound and Its Recording. 23, 3, p. 219-230 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Quantifying the importance of cyclopean view and binocular rivalry-related features for objective quality assessment of mobile 3D video

    Jin, L., Boev, A., Egiazarian, K. & Gotchev, A., 2014, In : Eurasip Journal on Image and Video Processing. January, p. 1-7 7 p., 6.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Difference of gaussians revolved along elliptical paths for ultrasound fetal head segmentation

    Foi, A., Maggioni, M., Pepe, A., Rueda, S., Noble, A. J., Papageorghiou, A. T. & Tohka, J., 2014, In : Computerized Medical Imaging and Graphics. 38, 8, p. 774-784 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis

    Härmä, V., Schkov, H-P., Happonen, A., Ahonen, I., Virtanen, J., Siitari, H., Åkerfelt, M., Lötjönen, J. & Nees, M., 2014, In : PLoS ONE. May, 8, p. 1-11 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    DOT1L -HES6 fusion drives androgen independent growth in prostate cancer

    Annala, M., Kivinummi, K., Leinonen, K., Tuominen, J., Zhang, W., Visakorpi, T. & Nykter, M., 2014, In : EMBO Molecular Medicine. 6, p. 1121-1123 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    In Vivo Kinetics of Segregation and Polar Retention of MS2-GFP-RNA Complexes in Escherichia coli

    Gupta, A., Lloyd-Price, J., Neeli-Venkata, R., Oliveira, S. M. D. & Ribeiro, A. S., 2014, In : Biophysical Journal. 106, 9, p. 1928-1937 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Differential Coding Using Enhanced Inter-Layer Reference Picture for the Scalable Extension of H.265/HEVC Video Codec

    Aminlou, A., Lainema, J., Ugur, K., Hannuksela, M. M. & Gabbouj, M., 2014, In : IEEE Transactions on Circuits and Systems for Video Technology. 24, 11, p. 1945-1956 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Integrated model-in-the-loop simulations to model-driven development in industrial control

    Vepsäläinen, T. & Kuikka, S., 2014, In : Simulation: Transactions of the Society for Modeling and Simulation International. 90, 12, p. 1295-1311 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Serum metabolic profiles in overweight and obese women with and without metabolic syndrome

    Wiklund, P. K., Pekkala, S., Autio, R., Munukka, E., Xu, L., Saltevo, J., Cheng, S., Kujala, U. M., Alen, M. & Cheng, S., 2014, In : Diabetology and Metabolic Syndrome. 6, 9 p., 40.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    An automatic framework for quantitative validation of voxel based morphometry measures of anatomical brain asymmetry

    Pepe, A., Dinov, I. & Tohka, J., 2014, In : NeuroImage. 56 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Flow framework for analyzing the quality of educational games

    Kiili, K., Lainema, T., de Freitas, S. & Arnab, S., 2014, In : Entertainment Computing. p. 367-377 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    KNN classification of metallic targets using the magnetic polarisability tensor

    Makkonen, J., Marsh, L. A., Vihonen, J., Järvi, A., Armitage, D. W., Visa, A. & Peyton, A. J., 2014, In : Measurement Science and Technology. 25, 5, p. 1-9 9 p., 055105.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Quantum Biology on the Edge of Quantum Chaos

    Vattay, G., Kauffman, S. & Niiranen, S., 2014, In : PLoS ONE. 9, 3, p. 1-6 6 p., e89107.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Exemplar-Based Sparse representation with Residual Compensation for Voice Conversion

    Wu, Z., Virtanen, T., Chng, E. S. & Li, H., 2014, In : IEEE Transactions on Audio Speech and Language Processing. 22, 10, p. 1506-1521 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase

    Fukuoh, A., Cannino, G., Gerards, M., Buckley, S., Kazancioglu, S., Scialo, F., Lihavainen, E., Ribeiro, A., Dufour, E. & Jacobs, H. T., 2014, In : Molecular Systems Biology. 10, 734, p. 1-21 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    A new method for artefact-free estimation of surface slope from bathymetric lidar data

    Kumpumäki, T. & Lipping, T., 2014, In : EAR Se L eProceedings. 13, p. 1-5 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Denoising of two-photon fluorescence images with Block-Matching 3D filtering

    Danielyan, A., Wu, Y-W., Shih, P-S., Dembitskaya, Y. & Semyanov, A., 2014, In : Methods. 68, 2, p. 308-316 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Performance evaluation of IEEE 802.11p-enabled vehicular video surveillance system

    Bellalta, B., Belyaev, E., Jonsson, M. & Vinel, A., 2014, In : IEEE Communications Letters. 18, 4, p. 708-711 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Studying the User Experience of a Tablet Based Math Game

    Kiili, K., Ketamo, H., Koivisto, A. & Finn, E., 2014, In : International Journal of Game-Based Learning. 4, 1, p. 60-77 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Representation of Multiple-Valued Functions with Flat Vilenkin-Chrestenson Spectra by Decision Diagrams

    Stankovic, S., Stankovic, M. & Astola, J., 2014, In : Journal of Multiple-Valued Logic and Soft Computing. 23, 5-6, p. 485-501 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Flow Experience as a Quality Measure in Evaluating Physically Activating Collaborative Serious Games

    Kiili, K., Perttula, A., Lindstedt, A., Arnab, S. & Suominen, M., 2014, In : International Journal of Serious Games. 1, 3, p. 35-49 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Protein-protein interaction and coarse grained simulation study of Glioblastoma Multiforme reveals novel pathways of GPR17

    Mutharasu, G., Yli-harja, O. & Kandhavelu, M., 2014, In : TASK Quarterly. 18, 4, p. 321-325 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Mobile panoramic video applications for learning

    Multisilta, J., 2014, In : Education and Information Technologies. 19, 3, p. 655-666 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Emmerdale netissä: Ohjelmakohtaisten sivustojen käyttötarkoitukset osana katselukokemusta

    Tuomi, P., 2014, In : Tekniikan Waiheita: Teknik I Tiden. 4, 32, p. 23-31 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Bioprocess data mining using regularized regression and random forests

    Hassan, S. S., Farhan, M., Mangayil, R., Huttunen, H. & Aho, T., 12 Aug 2013, In : BMC Systems Biology. 7, Suppl 1, 7 p., 5.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Effects of multimerization on the temporal variability of protein complex abundance

    Häkkinen, A., Tran, H., Yli-Harja, O., Ingalls, B. & Ribeiro, A. S., 2013, In : BMC Systems Biology. 7, Suppl 1, 13 p., S3.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework

    Mäki-Marttunen, T., Acimovic, J., Linne, M-L. & Ruohonen, K., 2013, In : PLoS ONE. 8, 7, p. 1-16 16 p., e69373.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Information Security Assessment of SMEs as Coursework - Learning Information Security Management by Doing

    Ilvonen, I., 2013, In : Journal of Information Systems Education. 24, 1, p. 53-59 57 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    On the applicability of capability models for small software organizations: does the use of standard processes lead to a better achievement of business goals?

    Suominen, M. & Mäkinen, T., 2013, In : Software Quality Journal. 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations

    Hituri, K. & Linne, M-L., 2013, In : PLoS ONE. 8, 4, p. 1-13 13 p., e59618.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Multiview-Video-Plus-Depth Coding Based on the Advanced Video Coding Standard

    Hannuksela, M. M., Rusanovskyy, D., Su, W., Chen, L., Li, R., Aflaki, P., Lan, D., Joachimiak, M., Li, H. & Gabbouj, M., 2013, In : IEEE Transactions on Image Processing. 22, 9, p. 3449-3458 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Gene-pair expression signatures reveal lineage control

    Heinäniemi, M., Nykter, M., Kramer, R., Wienecke-Baldacchino, A., Sinkkonen, L., Zhou, J. X., Kreisberg, R., Kauffman, S. A., Huang, S. & Shmulevich, I., 2013, In : Nature Methods. 10, 6, p. 577-583 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Classification of ground moving targets using bicepstrum-based features extracted from Micro-Doppler radar signatures

    Molchanov, P. O., Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2013, In : Eurasip Journal on Advances in Signal Processing. 1, p. 1-13 13 p., 61.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Evaluation of methods for modeling transcription-factor sequence specificity

    Weirauch, M., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., Talukder, S., Bussemaker, H., Morris, Q., Bulyk, M., Stolovitzky, G., Hughes, T. & Nykter, M. DREAM. C., 2013, In : Nature Biotechnology. 31, 2, p. 126-134 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Diversifying higher education: facilitating different ways of learning

    Virtanen, P., Myllärniemi, J. & Wallander, H., 2013, In : Campus-Wide Information Systems. 30, 3, p. 201-211 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Mind reading with regularized multinomial logistic regression

    Huttunen, H., Manninen, T., Kauppi, J-P. & Tohka, J., 2013, In : Machine Vision and Applications. 24, 6, p. 1311-1325

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Sorad: A systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements

    Äijö, T., Granberg, K. & Lähdesmäki, H., 2013, In : Bioinformatics. 29, 10, p. 1283-1291 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium

    Kivistö, A., Larjo, A., Ciranna, A., Santala, V., Roos, C. & Karp, M., 2013, In : Genome Announcements. 1, 2, p. 1-2 2 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Characterization of aberrant pathways across human cancers

    Ylipää, A., Yli-Harja, O., Zhang, W. & Nykter, M., 2013, In : BMC Systems Biology. 7, Supplement 1, p. 1-12 12 p., S1.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Loss of PTEN is associated with aggressive behavior in ERG-positive prostate cancer

    Leinonen, K. A., Saramäki, O. R., Furusato, B., Kimura, T., Takahashi, H., Egawa, S., Suzuki, H., Keiger, K., Hahm, S. H., Isaacs, W. B., Tolonen, T. T., Stenman, U-H., Tammela, T. L. J., Nykter, M., Bova, G. S. & Visakorpi, T., 2013, In : Cancer Epidemiology Biomarkers and Prevention. 22, 12, p. 2333-2344 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Short-term and long-term memory deficits in handedness learning in mice with absent corpus callosum and reduced hippocampal commissure

    Ribeiro, A. S., Eales, B. A. & Biddle, F. G., 2013, In : Behavioural Brain Research. 245, p. 145-151 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Moving the Science of Behavioral Change into the 21st Century

    Saranummi, N., Spruijit-Mertz, D., Intille, S. S., Korhonen, I., Nilsen, W. J. & Pavel, M., 2013, In : IEEE Pulse. 4, 5, p. 22-24 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Active-set newton algorithm for overcomplete non-negative representations of audio

    Virtanen, T., Gemmeke, J. F. & Raj, B., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 11, p. 2277-2289 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Bistability in a stochastic RNA-mediated gene network

    Lloyd-Price, J. & Ribeiro, A. S., 2013, In : Physical Review E. 88, 3, p. 1-8 8 p., 032714.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Designing for Music Discovery: Evaluation and Comparison of Five Music Player Prototypes

    Lehtiniemi, A. & Holm, J., 2013, In : Journal of New Music Research. 42, 3, p. 283-302 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma

    Parker, C., Annala, M., Cogdell, D., Granberg, K., Sun, Y., Ji, P., Li, X., Gumin, J., Zheng, H., Hu, L., Yli-Harja, O., Haapasalo, H., Visakorpi, T., Liu, X., Liu, C., Sawaya, R., Fuller, G., Chen, K., Lang, F., Nykter, M. & Zhang, W., 2013, In : Journal of Clinical Investigation. 123, 2, p. 855-65 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Online blind speech separation using multiple acoustic speaker tracking and time-frequency masking

    Pertilä, P., 2013, In : Computer Speech and Language. 27, 3, p. 683-702 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Automatic Music Transcription: Challenges and Future Directions

    Benetos, E., Dixon, S., Giannoulis, D., Kirchhoff, H. & Klapuri, A., 2013, In : Journal of Intelligent Information Systems. 41, 3, p. 407-434 28 p.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Effects of temperature on the dynamics of the LacI-TetR-CI repressilator

    Chandraseelan, J. G., Oliveira, S. M. D., Häkkinen, A., Tran, H., Potapov, I., Sala, A., Kandhavelu, M. & Ribeiro, A. S., 2013, In : Molecular Biosystems. 9, 12, p. 3117-3123 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Data-Based Quadrature Imbalance Compensation for a CW Doppler Radar System

    Singh, A., Xiaomeng, G., Yavari, E., Zakrzewski, M., Cao, X. H., Lubecke, V. M. & Boric-Lubecke, O., 2013, In : IEEE Transactions on Microwave Theory and Techniques. 61, 4, p. 1718-1724 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Effects of Rate-Limiting Steps in Transcription Initiation on Genetic Filter Motifs

    Häkkinen, A., Tran, H., Yli-Harja, O. & Ribeiro, A. S., 2013, In : PLoS ONE. 8, 8, p. 1-9 9 p., e70439.

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Mobile Activation Games for Rehabilitation and Recreational Activities

    Koivisto, A., Merilampi, S., Kiili, K., Sirkka, A. & Salli, J., 2013, In : Public Health Frontier. 2, 3, p. 122-132 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Adaptive matching pursuit using coordinate descent and double residual minimization

    Onose, A. & Dumitrescu, B., 2013, In : Signal Processing. 93, 11, p. 3143-3150 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Does the Shannon bound really apply to all data structures

    Valmari, A., 2013, In : Proceedings of the Estonian Academy of Sciences. 62, 1, p. 47-58 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    ZebIAT, an image analysis tool for registering zebrafish embryos and quantifying cancer metastasis

    Annila, T., Lihavainen, E., Marques, I. J., Williams, D. R., Yli-Harja, O. & Ribeiro, A. S., 2013, In : BMC Bioinformatics. 14, Suppl 10, 9 p., S5.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    Audio Pitch Shifting Using the Constant-Q Transform

    Schörkhuber, C., Klapuri, A. & Sontacchi, A., 2013, In : Journal of the Audio Engineering Society. 61, 7-8, p. 562-572 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    A method for the design of Farrow-structure based variable fractional-delay FIR filters

    Eghbali, A., Johansson, H. & Saramäki, T., 2013, In : Signal Processing. 93, 5, p. 1341-1348 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Sparse Modeling for Lossless Audio Compression

    Ghido, F. & Tabus, I., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 1, p. 12-26

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Proprotein Convertase Subtilisin/Kexin Type 7 (PCSK7) Is Essential for the Zebrafish Development and Bioavailability of Transforming Growth Factor beta1a (TGFbeta1a)

    Turpeinen, H., Oksanen, A., Kivinen, V., Kukkurainen, S., Uusimäki, A., Räme, M., Parikka, M., Hytönen, V. P., Nykter, M. & Pesu, M., 2013, In : Journal of Biological Chemistry. 288, 51, p. 36610-36623 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Lossy and visually lossless compression of single-look SAR images

    Ponomarenko, N. N., Lukin, V. V., Kozhemiakin, R. A., Egiazarian, K. O. & Chobanu, M. K., 2013, In : Telecommunications and Radio Engineering. 72, 8, p. 711-729 19 p.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Advanced statistical tools for enhanced quality digital imaging with realistic capture models

    Pizurica, A., Portilla, J., Hirakawa, K. & Egiazarian, K., 2013, In : Eurasip Journal on Advances in Signal Processing. 2013, p. 1-4 4 p., 140.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Students' Participation in a Social Media Enhanced Learning Environment

    Tervakari, A-M., Silius, K. & Kailanto, M., 2013, In : International Journal of Emerging Technologies in Learning. 8, 2, p. 20-28 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Critical assessment of automated flow cytometry data analysis techniques

    Aghaeepour, N., Finak, G., Hoos, H., Mosmann, T. R., Brinkman, R., Gottardo, R., Scheuermann, R. H., Dougall, D., Khodabakhshi, A. H., Mah, P., Obermoser, G., Spidlen, J., Taylor, I., Wuensch, S. A., Bramson, J., Eaves, C., Manninen, T., Huttunen, H., Ruusuvuori, P. & Nykter, M., 2013, In : Nature Methods. 10, 3, p. 228-238 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Lossy Depth Image Compression using Greedy Rate-Distortion Slope Optimization

    Schiopu, I. & Tabus, I., 2013, In : IEEE Signal Processing Letters. 20, 11, p. 1066-1069 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Cell segmentation by multi-resolution analysis and maximum likelihood estimation (MAMLE)

    Chowdhury, S., Kandhavelu, M., Yli-Harja, O. & Ribeiro, A. S., 2013, In : BMC Bioinformatics. 14, Suppl 10, p. 1-13 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Passive temporal offset estimation of multichannel recordings of an ad-hoc microphone array

    Pertilä, P., Hämäläinen, M. S. & Mieskolainen, M., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 11, p. 2393-2402 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    All Linear-Time Congruences for Familiar Operators

    Valmari, A., 2013, In : Logical Methods in Computer Science. 9, 4, p. 1-34 34 p., 11.

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text

    Heintzelman, N. H., Taylor, R. J., Simonsen, L., Lustig, R., Anderko, D., Haythornthwaite, J. A., Childs, L. C. & Bova, G. S., 2013, In : Journal of the American Medical Informatics Association. 20, 5, p. 898-905 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Televisio kohtaa Twitterin - uudenlaisen katselukokemuksen yhteisöllisyys

    Tuomi, P., 2013, In : Wider Screen. 2-3, 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Digital image reconstruction by using row pre-distortion and third-order moment function estimation

    Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2013, In : Telecommunications and Radio Engineering. 72, 6, p. 485-494 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    Ambient bloom: new business, content, design and models to increase the semantic ambient media experience

    Pogorelc, B., Lugmayr, A., Stockleben, B., Vatavu, R-D., Tahmasebi, N., Serral, E., Stojmenova, E., Imperl, B., Risse, T., Zenz, G. & Gams, M., 2013, In : Multimedia Tools and Applications. 66, 1, p. 7-32 26 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Karyotypically abnormal human ESCs are sensitive to HDAC inhibitors and show altered regulation of genes linked to cancers and neurological diseases

    Lund, R. J., Reddy Emani, M., Barbaric, I., Kivinen, V., Jones, M., Baker, D., Gokhale, P., Nykter, M., Lahesmaa, R. & Andrews, P. W., 2013, In : Stem Cell Research. 11, 3, p. 1022-1036 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    A Novel Method for Splitting Clumps of Convex Objects Incorporating Image Intensity and Using Rectangular Window-Based Concavity Point-Pair Search

    Farhan, M., Yli-Harja, O. & Niemistö, A., 2013, In : Pattern Recognition. 46, 3, p. 741-751 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    Phase retrieval in 4f optical system: background compensation and sparse regularization of object with binary amplitude

    Migukin, A., Agour, M. & Katkovnik, V., 2013, In : Applied Optics. 52, 1, p. A269-A280 12 p., 173116.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    On the human ability to discriminate audio ambiances from similar locations of an urban environment

    Korpi, D., Heittola, T., Partala, T., Eronen, A., Mesaros, A. & Virtanen, T., 2013, In : Personal and Ubiquitous Computing. 17, 4

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Modelling non-stationary noise with spectral factorisation in automatic speech recognition

    Hurmalainen, A., Gemmeke, J. F. & Virtanen, T., 2013, In : Computer Speech and Language. 27, 3, p. 763-779 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli

    Häkkinen, A., Muthukrishnan, A., Mora, A., Fonseca, J. M. & Ribeiro, A. S., 2013, In : Bioinformatics. 29, 13, p. 1708-1709 2 p.

    Research output: Contribution to journalArticleScientificpeer-review

  82. Published

    Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer

    Yang, D., Sun, Y., Hu, L., Zheng, H., Ji, P., Pecot, C. V., Zhao, Y., Reynolds, S., Cheng, H., Rupaimoole, R., Cogdell, D., Nykter, M., Broaddus, R., Rodriguez-Aguayo, C., Lopez-Berestein, G., Liu, J., Shmulevich, I., Sood, A. K., Chen, K. & Zhang, W., 2013, In : Cancer Cell. 23, 2, p. 186-199 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    A Low-Complexity Bit-Plane Entropy Coding and Rate Control for 3-D DWT Based Video Coding

    Belyaev, E., Egiazarian, K. & Gabbouj, M., 2013, In : IEEE Transactions on Multimedia. 15, 8, p. 1786-1799 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    Multi-scale Gaussian representation and outline-learning based cell image segmentation

    Farhan, M., Ruusuvuori, P., Emmenlauer, M., Rämö, P., Dehio, C. & Yli-Harja, O., 2013, In : BMC Bioinformatics. 14, SUPPL10, p. 1-14 14 p., S6.

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Expected User Experience of Mobile Augmented Reality Services: A User Study in the Context of Shopping Centers

    Olsson, T., Lagerstam, E-M., Kärkkäinen, T. & Väänänen-Vainio-Mattila, K., 2013, In : Personal and Ubiquitous Computing. 17, p. 287-304

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Visualizations of User Data in a Social Media Enhanced Web-based Environment in Higher Education

    Silius, K., Tervakari, A-M. & Kailanto, M., 2013, In : International Journal of Emerging Technologies in Learning. 8, 2, p. 13-19 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Preparing for Cyber Threats with Information Security Policies

    Ilvonen, I. & Hellsten, P., 2013, In : International Journal of Cyber Warfare and Terrorism. 3, 4, p. 22-31 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  88. Published

    Nonlocal Transform-Domain Filter for Volumetric Data Denoising and Reconstruction

    Maggioni, M., Katkovnik, V., Egiazarian, K. & Foi, A., 2013, In : IEEE Transactions on Image Processing. 22, 1, p. 119-133 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter

    Mäkelä, J., Kandhavelu, M., Oliveira, S. M. D., Chandraseelan, J. G., Lloyd-Price, J., Peltonen, J., Yli-Harja, O. & Ribeiro, A. S., 2013, In : Nucleic Acids Research. 41, 13, p. 6544-6552 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    Evaluation and assessment of arctangent-based post-glacial land uplift model

    Pohjola, J., Lipping, T., Turunen, J. & Ikonen, A. T. K., 2013, In : EAR Se L eProceedings. 12, 2, p. 82-93 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Can we reduce SPECT acquisition time using MAP-EM reconstruction?

    Tuna, U., Sohlberg, A. & Ruotsalainen, U., 2013, In : Journal of Pattern Recognition and Intelligent Systems. 1, 3, p. 54-63 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Categorization of ambient media projects on their business models, innovativeness, and characteristics-evaluation of Nokia Ubimedia MindTrek Award Projects of 2010

    Lugmayr, A., Zou, Y., Stockleben, B., Lindfors, K. & Melakoski, C., 2013, In : Multimedia Tools and Applications. 66, 1, p. 33-57

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Context Coding of Depth Map Images Under the Piecewise-Constant Image Model Representation

    Tabus, I., Schiopu, I. & Astola, J., 2013, In : IEEE Transactions on Image Processing. 22, 11, p. 4195-4210 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Dissecting genealogy and cell cycle as sources of cell-to-cell variability in MAPK signaling using high-throughput lineage tracking

    Ricicova, M., Hamidi, M., Quiring, A., Niemistö, A., Emberly, E. & Hansen, C. L., 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 28, p. 11403-11408 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Balance between Noise and Information Flow Maximizes Set Complexity of Network Dynamics

    Mäki-Marttunen, T., Kesseli, J. & Nykter, M., 2013, In : PLoS ONE. 8, 3, p. 1-15 15 p., e56523.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    Subjective quality assessment of asymmetric stereoscopic 3D video

    Aflaki, P., Hannuksela, M. M. & Gabbouj, M., 2013, In : Signal, Image and Video Processing. p. 1-15 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    Feasibility of Benthic Cover-Type Mapping in Turbid Waters near Estuaries Using Hyperspectral Remote Sensing

    Tuominen, J. & Lipping, T., 2013, In : Journal of Coastal Research. 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Published

    Consumer value of camera-based mobile interaction with the real world

    Salo, M., Olsson, T., Makkonen, M., Hautamäki, A. & Frank, L., 2013, In : Pervasive and Mobile Computing. 9, 2, p. 258-268 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    Transcriptional Analysis Reveals Gender-Specific Changes in the Aging of the Human Immune System

    Marttila, S., Jylhävä, J., Nevalainen, T., Nykter, M., Jylhä, M., Hervonen, A., Tserel, L., Peterson, P. & Hurme, M., 2013, In : PLoS ONE. 8, 6, p. 1-8 8 p., e66229.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initation of Human T helper 1 and T helper 2 Cell Polarization

    Hawkins, D. R., Larjo, A., Tripathi, S. K., Wagner, U., Luu, Y., Lönnberg, T., Raghav, S. K., Lee, L. K., Lund, R., Ren, B., Lähdesmäki, H. & Lahesmaa, R., 2013, In : Immunity. 38, 6, p. 1271-1284 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    An Efficient Adaptive Binary Arithmetic Coder With Low Memory Requirement

    Belyaev, E., Egiazarian, K., Gabbouj, M. & Turlikov, A., 2013, In : IEEE Journal of Selected Topics in Signal Processing. 7, 6, p. 1053-1061 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

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