Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    SCIP: a single-cell image processor toolbox

    Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method

    Hegele, L. A., Scagliarini, A., Sbragaglia, M., Mattila, K. K., Philippi, P. C., Puleri, D. F., Gounley, J. & Randles, A., 4 Oct 2018, In : Physical Review E. 98, 4, 13 p., 043302.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Comparative analysis of tissue reconstruction algorithms for 3D histology

    Kartasalo, K., Latonen, L., Vihinen, J., Visakorpi, T., Nykter, M. & Ruusuvuori, P., 1 Sep 2018, In : Bioinformatics. 34, 17, p. 3013-3021 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects

    Alberucci, A., Laudyn, U. A., Piccardi, A., Kwasny, M., Klus, B., Karpierz, M. A. & Assanto, G., 11 Jul 2017, In : Physical Review E. 96, 1, 012703.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files

    Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., Dehmer, M. & Emmert-Streib, F., 1 Nov 2016, In : Bioinformatics. 32, 21, p. 3345-3347 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration

    Palyulin, V. V., Chechkin, A. V., Klages, R. & Metzler, R., 8 Sep 2016, In : Journal of Physics A: Mathematical and Theoretical. 49, 39, 394002.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Introducing libeemd: a program package for performing the ensemble empirical mode decomposition

    Luukko, P. J. J., Helske, J. & Räsänen, E., 1 Jun 2016, In : Computational Statistics. 31, 2, p. 545-557 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Characterizing rate limiting steps in transcription from RNA production times in live cells

    Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Diffusion through thin membranes: Modeling across scales

    Aho, V., Mattila, K., Kühn, T., Kekäläinen, P., Pulkkinen, O., Minussi, R. B., Vihinen-Ranta, M. & Timonen, J., 12 Apr 2016, In : Physical Review E. 93, 4, 043309.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids

    Ropo, M., Schneider, M., Baldauf, C. & Blum, V., 16 Feb 2016, In : Scientific Data. 3, 160009.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning

    Larjo, A. & Lähdesmäki, H., 27 Dec 2015, In : Eurasip Journal on Bioinformatics and Systems Biology. 2015, 1, 6.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Hermitian one-particle density matrix through a semiclassical gradient expansion

    Bencheikh, K. & Räsänen, E., 9 Dec 2015, In : Journal of Physics A: Mathematical and Theoretical. 49, 1, 015205.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Forecasting mortality rate by singular spectrum analysis

    Mahmoudvand, R., Alehosseini, F. & Rodrigues, P. C., 1 Nov 2015, In : REVSTAT STATISTICAL JOURNAL. 13, 3, p. 193-206 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Quantifying the non-ergodicity of scaled Brownian motion

    Safdari, H., Cherstvy, A. G., Chechkin, A. V., Thiel, F., Sokolov, I. M. & Metzler, R., 18 Sep 2015, In : Journal of Physics A: Mathematical and Theoretical. 48, 37, 375002.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach

    Devassy, L., Jisha, C. P., Alberucci, A. & Kuriakose, V. C., 19 Aug 2015, In : Physical Review E. 92, 2, 12 p., 022914.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Ageing first passage time density in continuous time random walks and quenched energy landscapes

    Krüsemann, H., Godec, A. & Metzler, R., 17 Jul 2015, In : Journal of Physics A: Mathematical and Theoretical. 48, 28, 285001.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Signal focusing through active transport

    Godec, A. & Metzler, R., 2 Jul 2015, In : Physical Review E. 92, 1, 6 p., 010701.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    A robust AMMI model for the analysis of genotype-by-environment data

    Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Investigation of an entropic stabilizer for the lattice-Boltzmann method

    Mattila, K. K., Hegele, L. A. & Philippi, P. C., 19 Jun 2015, In : Physical Review E. 91, 6, 063010.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Optimization and universality of Brownian search in a basic model of quenched heterogeneous media

    Godec, A. & Metzler, R., 21 May 2015, In : Physical Review E. 91, 5, 052134.

    Research output: Contribution to journalArticleScientificpeer-review

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