Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Characterizing rate limiting steps in transcription from RNA production times in live cells

    Häkkinen, A. & Ribeiro, A. S., 1 May 2016, In : Bioinformatics. 32, 9, p. 1346-1352 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    On k-Hypermonogenic Functions and Their Mean Value Properties

    Eriksson, S-L. & Orelma, H., 2016, In : Complex Analysis and Operator Theory. 10, 2, p. 311-325 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Modeling probability densities with sums of exponentials via polynomial approximation

    Dumitrescu, B., Şicleru, B. C. & Avram, F., 2016, In : Journal of Computational and Applied Mathematics. 292, p. 513–525

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    A robust AMMI model for the analysis of genotype-by-environment data

    Rodrigues, P. C., Monteiro, A. & Lourenço, V. M., 1 Jul 2015, In : Bioinformatics. 32, 1, p. 58-66 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Graph distance measures based on topological indices revisited

    Dehmer, M., Emmert-Streib, F. & Shi, Y., 18 Jun 2015, In : Applied Mathematics and Computation. 266, p. 623-633 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data

    Häkkinen, A. & Ribeiro, A. S., 1 Jan 2015, In : Bioinformatics. 31, 1, p. 69-75 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Van der Waals interactions are critical in Car-Parrinello molecular dynamics simulations of porphyrin-fullerene dyads

    Karilainen, T., Cramariuc, O., Kuisma, M., Tappura, K. & Hukka, T. I., 2015, In : Journal of Computational Chemistry. 36, 9, p. 612-621 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Entropy bounds for dendrimers

    Chen, Z., Dehmer, M., Emmert-Streib, F. & Shi, Y., 1 Sep 2014, In : Applied Mathematics and Computation. 242, p. 462-472 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    NetBioV: An R package for visualizing large network data in biology and medicine

    Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2 Apr 2014, In : Bioinformatics. 30, 19, p. 2834-2836 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., 1 Feb 2014, In : Bioinformatics. 30, 3, p. 360-368 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    A microscopic view of the mechanisms of active transport across the cellular membrane

    Enkavi, G., Li, J., Wen, P., Thangapandian, S., Moradi, M., Jiang, T., Han, W. & Tajkhorshid, E., 2014, In : Annual Reports in Computational Chemistry. 10, p. 77-125 49 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers

    Wang, J. & Ray, A. K., 2014, In : Journal of Computational and Theoretical Nanoscience. 11, 7, p. 1710-1717 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Magnetic origin of the chemical balance in alloyed Fe-Cr stainless steels: First-principles and Ising model study

    Airiskallio, E., Nurmi, E., Väyrynen, I. J., Kokko, K., Ropo, M., Punkkinen, M. P. J., Johansson, B. & Vitos, L., 2014, In : Computational Materials Science. 92, p. 135-140 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    An efficient heuristic approach to detecting graph isomorphism based on combinations of highly discriminating invariants

    Dehmer, M., Grabner, M., Mowshowitz, A. & Emmert-Streib, F., Aug 2013, In : Advances in Computational Mathematics. 39, 2, p. 311-325 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Growth behavior and magnetic properties of spherical uranium oxide nanoclusters

    Ma, L. & Ray, A. K., Feb 2013, In : Journal of Computational and Theoretical Nanoscience. 10, 2, p. 334-340 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Density functional theory study of FePdn (n = 2-14) clusters and interactions with small molecules

    Ma, L., Wang, J., Hao, Y. & Wang, G., Feb 2013, In : Computational Materials Science. 68, p. 166-173 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses

    Rahmatallah, Y., Emmert-Streib, F. & Glazko, G., Dec 2012, In : Bioinformatics. 28, 23, p. 3073-3080 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Universal construction mechanism for networks from one-dimensional symbol sequences

    Emmert-Streib, F., 15 Oct 2012, In : Applied Mathematics and Computation. 219, 3, p. 1020-1030 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Evolutionary dynamics of the spatial Prisoner's Dilemma with self-inhibition

    Emmert-Streib, F., 5 Feb 2012, In : Applied Mathematics and Computation. 218, 11, p. 6482-6488 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data

    Yu, G., Zhang, B., Bova, G. S., Xu, J., Shih, I. M. & Wang, Y., Jun 2011, In : Bioinformatics. 27, 11, p. 1473-1480 8 p., btr183.

    Research output: Contribution to journalArticleScientificpeer-review