Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Evaluation of the different sleep-disordered breathing patterns of the compressed tracheal sound

    Tenhunen, M., Huupponen, E., Hasan, J., Heino, O. & Himanen, S. L., 1 Aug 2015, In : Clinical Neurophysiology. 126, 8, p. 1557-1563 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    X-ray microtomographic confirmation of the reliability of CBCT in identifying the scalar location of cochlear implant electrode after round window insertion

    Zou, J., Hannula, M., Lehto, K., Feng, H., Lähelmä, J., Aula, A. S., Hyttinen, J. & Pyykkö, I., 1 Aug 2015, In : Hearing Research. 326, p. 59-65 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Association between soluble L-selectin and anti-JCV antibodies in natalizumab-treated relapsing-remitting MS patients

    Basnyat, P., Hagman, S., Kolasa, M., Koivisto, K., Verkkoniemi-Ahola, A., Airas, L. & Elovaara, I., 1 Jul 2015, In : Multiple Sclerosis and Related Disorders. 4, 4, p. 334-338 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    The effects of neuron morphology on graph theoretic measures of network connectivity: The analysis of a two-level statistical model

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 10 Jun 2015, In : Frontiers in Neuroanatomy. 9, June, 76.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Experiments of the sonification of the sleep electroencephalogram

    Franco, P. & Värri, A., 11 May 2015, In : Finnish Journal of eHealth and eWelfare. 7, 2-3, p. 65-74 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge

    Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M., Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L., Nielsen, M., Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S., 1 May 2015, In : NeuroImage. 111, p. 562-579 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway

    Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S., 1 May 2015, In : CELL DEATH AND DISEASE. 6, 5, e1752.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Analysis of apoptosis-related genes in patients with clinically isolated syndrome and their association with conversion to multiple sclerosis

    Hagman, S., Kolasa, M., Basnyat, P., Helminen, M., Kähönen, M., Dastidar, P., Lehtimäki, T. & Elovaara, I., 15 Mar 2015, In : JOURNAL OF NEUROIMMUNOLOGY. 280, p. 43-48 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Extreme learning machine based supervised subspace learning

    Iosifidis, A., 2015, In : Neurocomputing. 167, p. 158–164 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Patient-specific induced pluripotent stem cell—derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency

    Polinati, P. P., Ilmarinen, T., Trokovic, R., Hyotylainen, T., Otonkoski, T., Suomalainen, A., Skottman, H. & Tynitiina, T., 2015, In : Investigative Ophthalmology and Visual Science. 56, 5, p. 3371-3382 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells

    Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H., 2015, In : Investigative Ophthalmology and Visual Science. 56, 11, p. 6265-6274 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K., 2015, In : NeuroImage: Clinical. 7, p. 823-829 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Regularized extreme learning machine for multi-view semi-supervised action recognition

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Dec 2014, In : Neurocomputing. 145, p. 250-262 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J., 1 Nov 2014, In : EPILEPSY RESEARCH. 108, 9, p. 1675-1679 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans

    Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J., 28 May 2014, In : JOURNAL OF CLINICAL AND EXPERIMENTAL NEUROPSYCHOLOGY. 36, 5, p. 540-550 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation

    Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S., 2014, In : OTOLOGY AND NEUROTOLOGY. 35, 4

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Learning sparse representations for view-independent human action recognition based on fuzzy distances

    Iosifidis, A., Tefas, A. & Pitas, I., 9 Dec 2013, In : Neurocomputing. 121, p. 344-353 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Post-stroke depression and depression-executive dysfunction syndrome are associated with recurrence of ischaemic stroke

    Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J., Vataja, R. & Erkinjuntti, T., Dec 2013, In : CEREBROVASCULAR DISEASES. 36, 5-6, p. 336-343 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Effects of exogenous alpha-synuclein on stimulated dopamine overflow in dorsal striatum

    Pelkonen, A., Kallunki, P. & Yavich, L., 25 Oct 2013, In : Neuroscience Letters. 554, p. 141-145 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Transfer learning using a nonparametric sparse topic model

    Faisal, A., Gillberg, J., Leen, G. & Peltonen, J., 18 Jul 2013, In : Neurocomputing. 112, p. 124-137 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI

    Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R., 29 May 2013, In : NeuroReport. 24, 8, p. 440-444 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells

    Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R., Apr 2013, In : Journal of Neuroscience Methods. 215, 1, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

    Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Disconnection between periodic leg movements and cortical arousals in spinal cord injury

    Salminen, A. V., Manconi, M., Rimpilä, V., Luoto, T. M., Koskinen, E., Ferri, R., Öhman, J. & Polo, O., 2013, In : JOURNAL OF CLINICAL SLEEP MEDICINE. 9, 11, p. 1207-1209 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J., Dec 2012, In : EPILEPSIA. 53, 12

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke

    Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T., Oct 2012, In : CEREBROVASCULAR DISEASES. 34, 3, p. 191-198 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients

    Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I., 15 Sep 2012, In : JOURNAL OF NEUROIMMUNOLOGY. 250, 1-2, p. 106-110 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats

    Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L., Apr 2012, In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101, 2, p. 239-245 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Cortical spreading depression in alpha-synuclein knockout mice

    Pelkonen, A. & Yavich, L., Jan 2012, In : SYNAPSE. 66, 1, p. 81-84 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    The effect of different text presentation formats on eye movement metrics in reading

    Sharmin, S., Špakov, O. & Räihä, K. J., 2012, In : JOURNAL OF EYE MOVEMENT RESEARCH. 5, 3, 3.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    COX-2 regulates the proliferation of glioma stem like cells

    Sharma, V., Dixit, D., Ghosh, S. & Sen, E., Oct 2011, In : NEUROCHEMISTRY INTERNATIONAL. 59, 5, p. 567-571 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study

    Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I., May 2011, In : JOURNAL OF NEUROIMMUNOLOGY. 234, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling

    Heikkinen, H., Vinberg, F., Nymark, S. & Koskelainen, A., May 2011, In : Journal of Neurophysiology. 105, 5, p. 2309-2318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies

    Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J., Mar 2011, In : European Journal of Neurology. 18, 3, p. 402-409 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Fault tolerant machine learning for nanoscale cognitive radio

    Pajarinen, J., Peltonen, J. & Uusitalo, M. A., Feb 2011, In : Neurocomputing. 74, 5, p. 753-764 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Neuromuscular pathology in mice lacking alpha-synuclein

    Pelkonen, A. & Yavich, L., 10 Jan 2011, In : Neuroscience Letters. 487, 3, p. 350-353 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2001, In : Journal of Physiology: Paris. 95, 1-6, p. 497 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2000, In : Journal of Physiology: Paris. 94, 5-6, p. 555-567 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. A2 Review article in a scientific journal
  46. Published

    Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

    Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  47. Published

    From in silico astrocyte cell models to neuron-astrocyte network models: A review

    Oschmann, F., Berry, H., Obermayer, K. & Lenk, K., 2018, In : BRAIN RESEARCH BULLETIN. 136, p. 76-84

    Research output: Contribution to journalReview ArticleScientificpeer-review

  48. A3 Part of a book or another research book
  49. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  50. A4 Article in a conference publication
  51. Published

    Deep audio-visual saliency: Baseline model and data

    Tavakoli, H. R., Borji, A., Kannala, J. & Rahtu, E., 6 Feb 2020, Proceedings ETRA 2020 Short Papers - ACM Symposium on Eye Tracking Research and Applications, ETRA 2020. Spencer, S. N. (ed.). ACM, 3

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Published

    Human-robot interactive learning architecture using ontologies and symbol manipulation

    Angleraud, A., Houbre, Q., Kyrki, V. & Pieters, R., 6 Nov 2018, RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE, p. 384-389 6 p. (IEEE RO-MAN).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Published

    Automatic objective thresholding to detect neuronal action potentials

    Tanskanen, J. M. A., Kapucu, F. E., Välkki, I. & Hyttinen, J. A. K., 29 Aug 2016, Proceedings of 2016 24th European Signal Processing Conference (EUSIPCO). p. 662-666 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  54. Published

    Whole-cell morphological properties of neurons constrain the nonrandom features of network connectivity

    Acimovic, J., Mäki-Marttunen, T. M. & Linne, M-L., 4 Dec 2015, 24th Annual Computational Neuroscience Meeting: CNS*2015. Cymbalyuk, G. & Burkitt, A. (eds.). Prague: BioMed Central, Vol. 16 (Suppl 1). p. P:O7 1 p. O7

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review