Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Detection and verification of glycosylation patterns of glycoproteins from clinical specimens using lectin microarrays and lectin-based immunosorbent assays

    Li, Y., Tao, S. C., Bova, G. S., Liu, A. Y., Chan, D. W., Zhu, H. & Zhang, H., 15 Nov 2011, In : Analytical Chemistry. 83, 22, p. 8509-8516 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Orientational dependence of the affinity of guanidinium ions to the water surface

    Wernersson, E., Heyda, J., Vazdar, M., Lund, M., Mason, P. E. & Jungwirth, P., 3 Nov 2011, In : Journal of Physical Chemistry Part B. 115, 43, p. 12521-12526 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    The effect of lipid oxidation on the water permeability of phospholipids bilayers

    Lis, M., Wizert, A., Przybylo, M., Langner, M., Swiatek, J., Jungwirth, P. & Cwiklik, L., 21 Oct 2011, In : Physical Chemistry Chemical Physics. 13, 39, p. 17555-17563 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Efficient surface structuring and photoalignment of supramolecular polymer-azobenzene complexes through rational chromophore design

    Vapaavuori, J., Valtavirta, V., Alasaarela, T., Mamiya, J. I., Priimagi, A., Shishido, A. & Kaivola, M., 21 Oct 2011, In : Journal of Materials Chemistry. 21, 39, p. 15437-15441 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Like-charge guanidinium pairing from molecular dynamics and ab initio calculations

    Vazdar, M., Vymětal, J., Heyda, J., Vondrášek, J. & Jungwirth, P., 20 Oct 2011, In : Journal of Physical Chemistry A. 115, 41, p. 11193-11201 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Versatile bio-ink for covalent immobilization of chimeric avidin on sol-gel substrates

    Heikkinen, J. J., Kivimäki, L., Määttä, J. A. E., Mäkelä, I., Hakalahti, L., Takkinen, K., Kulomaa, M. S., Hytönen, V. P. & Hormi, O. E. O., 15 Oct 2011, In : Colloids and Surfaces B: Biointerfaces. 87, 2, p. 409-414 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Quantitative glycoproteomic analysis of optimal cutting temperature-embedded frozen tissues identifying glycoproteins associated with aggressive prostate cancer

    Tian, Y., Bova, G. S. & Zhang, H., 15 Sep 2011, In : Analytical Chemistry. 83, 18, p. 7013-7019 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Tube-like natural halloysite/fluoroelastomer nanocomposites with simultaneous enhanced mechanical, dynamic mechanical and thermal properties

    Rooj, S., Das, A. & Heinrich, G., Sep 2011, In : European Polymer Jounal. 47, 9, p. 1746-1755 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Towards universal enrichment nanocoating for IR-ATR waveguides

    Giammarco, J., Zdyrko, B., Petit, L., Musgraves, J. D., Hu, J., Agarwal, A., Kimerling, L., Richardson, K. & Luzinov, I., 28 Aug 2011, In : Chemical Communications. 47, 32, p. 9104-9106 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    From a localized H3O radical to a delocalized H 3O+⋯e- solvent-separated pair by sequential hydration

    Uhlig, F., Marsalek, O. & Jungwirth, P., 21 Aug 2011, In : Physical Chemistry Chemical Physics. 13, 31, p. 14003-14009 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Urea and guanidinium induced denaturation of a Trp-cage miniprotein

    Heyda, J., Kožíšek, M., Bednárova, L., Thompson, G., Konvalinka, J., Vondrášek, J. & Jungwirth, P., 21 Jul 2011, In : Journal of Physical Chemistry Part B. 115, 28, p. 8910-8924 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Defined-size DNA triple crossover construct for molecular electronics: Modification, positioning and conductance properties

    Linko, V., Leppiniemi, J., Paasonen, S. T., Hytönen, V. P. & Jussi Toppari, J., 8 Jul 2011, In : Nanotechnology. 22, 27, 275610.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Internal structure, hygroscopic and reactive properties of mixed sodium methanesulfonate-sodium chloride particles

    Liu, Y., Minofar, B., Desyaterik, Y., Dames, E., Zhu, Z., Cain, J. P., Hopkins, R. J., Gilles, M. K., Wang, H., Jungwirth, P. & Laskin, A., 7 Jul 2011, In : Physical Chemistry Chemical Physics. 13, 25, p. 11846-11857 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Steric and electronic effects in the host-guest hydrogen bonding in clathrate hydrates

    Kulig, W., Kubisiak, P. & Cwiklik, L., 16 Jun 2011, In : Journal of Physical Chemistry A. 115, 23, p. 6149-6154 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Behavior of β-amyloid 1-16 at the air-water interface at varying ph by nonlinear spectroscopy and molecular dynamics simulations

    Miller, A. E., Petersen, P. B., Hollars, C. W., Saykally, R. J., Heyda, J. & Jungwirth, P., 16 Jun 2011, In : Journal of Physical Chemistry A. 115, 23, p. 5873-5880 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Behavior of the eigen form of hydronium at the air/water interface

    Jagoda-Cwiklik, B., Cwiklik, L. & Jungwirth, P., 16 Jun 2011, In : Journal of Physical Chemistry A. 115, 23, p. 5881-5886 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Preparation of zinc oxide free, transparent rubber nanocomposites using a layered double hydroxide filler

    Das, A., Wang, D. Y., Leuteritz, A., Subramaniam, K., Greenwell, H. C., Wagenknecht, U. & Heinrich, G., 28 May 2011, In : Journal of Materials Chemistry. 21, 20, p. 7194-7200 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators

    Auer, S., Nirschl, M., Schreiter, M. & Vikholm-Lundin, I., May 2011, In : Analytical and Bioanalytical Chemistry. 400, 5, p. 1387-1396 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Energetic origin of proton affinity to the air/water interface

    Takahashi, H., Maruyama, K., Karino, Y., Morita, A., Nakano, M., Jungwirth, P. & Matubayasi, N., 28 Apr 2011, In : Journal of Physical Chemistry Part B. 115, 16, p. 4745-4751 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Molecular dynamics simulations of the interactions of kinin peptides with an anionic POPG bilayer

    Manna, M. & Mukhopadhyay, C., 5 Apr 2011, In : Langmuir. 27, 7, p. 3713-3722 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Ionization of purine tautomers in nucleobases, nucleosides, and nucleotides: From the gas phase to the aqueous environment

    Pluhařová, E., Jungwirth, P., Bradforth, S. E. & Slavíček, P., 10 Feb 2011, In : Journal of Physical Chemistry Part B. 115, 5, p. 1294-1305 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Site-specific polarizabilities as predictors of favorable adsorption sites on Nan clusters

    Ma, L., Jackson, K. A. & Jellinek, J., 8 Feb 2011, In : Chemical Physics Letters. 503, 1-3, p. 80-85 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Interactions of molecular ions with model phospholipid membranes

    Petrov, M., Cwiklik, L. & Jungwirth, P., 2011, In : Collection of Czechoslovak Chemical Communications. 76, 6, p. 695-711 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    An electro-optically tunable Bragg reflector based on liquid crystals

    Gilardi, G., Asquini, R., D'Alessandro, A. & Assanto, G., 2011, In : Molecular Crystals and Liquid Crystals. 549, p. 62-68 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Enrichment polymer layers for detection of volatile vapors by ATR FT-IR

    Giammarco, J. M., Zdyrko, B., Hu, J., Agarwal, A., Kimerling, L., Carlie, N., Petit, L., Richardson, K. & Luzinov, I., 2011, In : ACS National Meeting Book of Abstracts.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Efficient production of NV colour centres in nanodiamonds using high-energy electron irradiation

    Dantelle, G., Slablab, A., Rondin, L., Lainé, F., Carrel, F., Bergonzo, P., Perruchas, S., Gacoin, T., Treussart, F. & Roch, J. F., Sep 2010, In : Journal of Luminescence. 130, 9, p. 1655-1658 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. On entropy-based molecular descriptors: Statistical analysis of real and synthetic chemical structures

    Dehmer, M., Varmuza, K., Borgert, S. & Emmert-Streib, F., 27 Jul 2009, In : Journal of Chemical Information and Modeling. 49, 7, p. 1655-1663 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Structural information content of networks: Graph entropy based on local vertex functionals

    Dehmer, M. & Emmert-Streib, F., Apr 2008, In : Computational Biology and Chemistry. 32, 2, p. 131-138 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. The structural information content of chemical networks

    Dehmer, M. & Emmert-Streib, F., Mar 2008, In : Zeitschrift fur Naturforschung Section A: A Journal of Physical Sciences. 63, 3-4, p. 155-158 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Batch dark fermentative hydrogen production from grass silage: The effect of inoculum, pH, temperature and VS ratio

    Pakarinen, O., Lehtomäki, A. & Rintala, J., Jan 2008, In : International Journal of Hydrogen Energy. 33, 2, p. 594-601 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Ultrasound-assisted extraction in the determination of arsenic, cadmium, copper, lead, and silver in contaminated soil samples by inductively coupled plasma atomic emission spectrometry

    Väisänen, A., Suontamo, R., Silvonen, J. & Rintala, J., 2002, In : Analytical and Bioanalytical Chemistry. 373, 1-2, p. 93-97 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Control of matrix interferences by the multiple linear regression model in the determination of arsenic, antimony and tin in lead pellets by inductively coupled plasma atomic emission spectrometry

    Väisänen, A., Suontamo, R. & Rintala, J., 2002, In : Journal of Analytical Atomic Spectrometry. 17, 3, p. 274-276 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Vilsmeier formylation of 2-carboxyindoles and preparation of O-benzylhydroxyureas on solid phase

    Tois, J., Franzèn, R., Aitio, O., Laakso, I. & Kylänlahti, I., Nov 2001, In : Journal of Combinatorial Chemistry. 3, 6, p. 542-545 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Solid-phase bromination and Suzuki coupling of 2-carboxyindoles

    Tois, J., Franzén, R., Aitio, O., Laakso, I., Huuskonen, J. & Taskinen, J., 2001, In : Combinatorial Chemistry and High Throughput Screening. 4, 6, p. 521-524 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Computational studies for the interpretation of gas response of SnO2(110) surface

    Rantala, T. S., Rantala, T. T. & Lantto, V., 30 Jun 2000, In : Sensors and Actuators B: Chemical. 65, 1, p. 375-378 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Preparation of 5-substituted 2-carboxyindoles on solid support

    Tois, J., Franzén, R., Aitio, O., Huikko, K. & Taskinen, J., 1 Apr 2000, In : Tetrahedron Letters. 41, 14, p. 2443-2446 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. The Suzuki, the Heck, and the Stille reaction - Three versatile methods, for the introduction of new C-C bonds on solid support

    Franzén, R., 2000, In : Canadian Journal of Chemistry - Revue Canadienne de Chimie. 78, 7, p. 957-962 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Experimental and theoretical study of the spin-spin coupling tensors in methylsilane

    Kaski, J., Lantto, P., Rantala, T. T., Schroderus, J., Vaara, J. & Jokisaari, J., 2 Dec 1999, In : Journal of Physical Chemistry A. 103, 48, p. 9669-9677 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Surface relaxation of the (110) face of rutile SnO2

    Rantala, T. T., Rantala, T. S. & Lantto, V., 11 Jan 1999, In : Surcface Science. 420, 1, p. 103-109 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Effect of nitro groups and alkyl chain length on the negative ion tandem mass spectra of alkyl 3-hydroxy-5-(4'-nitrophenoxy) and alkyl 3-hydroxy-5-(2', 4'-dinitrophenoxy) benzoates

    Kangas, H., Franzén, R., Tois, J., Taskinen, J. & Kostiainen, R., 1999, In : Rapid Communications in Mass Spectrometry. 13, 16, p. 1680-1684 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Computational approaches to the chemical sensitivity of semiconducting tin dioxide

    Rantala, T., Lantto, V. & Rantala, T., 1 Jan 1998, In : Sensors and Actuators B: Chemical. 47, 1-3, p. 59-64 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Phase diagram of argon clusters

    Rytkönen, A., Valkealahti, S. & Manninen, M., 1998, In : Journal of Chemical Physics. 108, 14, p. 5826-5833 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Investigation of the adducts formed by reaction of butenedioic acids with adenosine

    Franzén, R., Morita, M., Tanabe, K., Takagi, H. & Shibata, Y., Oct 1997, In : Chemical Research in Toxicology. 10, 10, p. 1186-1191 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Calculation of the molecular ordering parameters of (±)-3-butyn-2-ol dissolved in an organic solution of poly(γ-benzyl-L-glutamate)

    Lesot, P., Merlet, D., Courtieu, J., Emsley, J. W., Rantala, T. T. & Jokisaari, J., 31 Jul 1997, In : Journal of Physical Chemistry A. 101, 31, p. 5719-5724 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Inequivalence of single CHa and CHb methylene bonds in the interior of a diunsaturated lipid bilayer from a molecular dynamics simulation

    Hyvönen, M., Ala-Korpela, M., Vaara, J., Rantala, T. T. & Jokisaari, J., 4 Apr 1997, In : Chemical Physics Letters. 268, 1-2, p. 55-60 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Start-up and Operation of Laboratory-Scale Thermophilic Upflow Anaerobic Sludge Blanket Reactors Treating Vegetable Processing Wastewaters

    Lepistö, S. S. & Rintala, J. A., Mar 1997, In : Journal of Chemical Technology and Biotechnology. 68, 3, p. 331-339 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Surface relaxation of the (1010) face of wurtzite CdS

    Rantala, T. T., Rantala, T. S., Lantto, V. & Vaara, J., 15 May 1996, In : Surcface Science. 352-354, p. 77-82 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Mutational spectra of Salmonella typhimurium revertants induced by chlorohydroxyfuranones, byproducts of chlorine disinfection of drinking water

    Knasmuller, S., Zöhrer, E., Kronberg, L., Kundi, M., Franzen, R. & Schulte-Hermann, R., 1996, In : Chemical Research in Toxicology. 9, 2, p. 374-381 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Effects of two double bonds on the hydrocarbon interior of a phospholipid bilayer

    Hyvönen, M., Ala-Korpela, M., Vaara, J., Rantala, T. T. & Jokisaari, J., 24 Nov 1995, In : Chemical Physics Letters. 246, 3, p. 300-306 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Synthesis of chlorinated 5-hydroxy 4-methyl-2(5H)-furanones and mucochloric acid

    Franzén, R. & Kronberg, L., 29 May 1995, In : Tetrahedron Letters. 36, 22, p. 3905-3908 4 p.

    Research output: Contribution to journalArticleScientificpeer-review